RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 LYSTQ99698 3801 aa2.53□□□□□ -2
CLK3-212ENST00000563418 RYR1P21817 5038 aa2.51□□□□□ -2.01
CLK3-212ENST00000563418 HECTD4Q9Y4D8 3996 aa2.51□□□□□ -2.01
CLK3-212ENST00000563418 DNAH6Q9C0G6 4158 aa2.51□□□□□ -2.01
CLK3-212ENST00000563418 KRTAP10-4P60372 401 aaPredicted RBP2.5□□□□□ -2.01
CLK3-212ENST00000563418 DNAH2Q9P225 4427 aa2.5□□□□□ -2.01
CLK3-212ENST00000563418 CSMD3Q7Z407 3707 aa2.5□□□□□ -2.01
CLK3-212ENST00000563418 ANK2Q01484 3957 aa2.49□□□□□ -2.01
CLK3-212ENST00000563418 LORP23490 312 aaPredicted RBP2.49□□□□□ -2.01
CLK3-212ENST00000563418 ANK3Q12955 4377 aaKnown RBP2.49□□□□□ -2.01
CLK3-212ENST00000563418 KRTAP8-1Q8IUC2 63 aa2.47□□□□□ -2.01
CLK3-212ENST00000563418 HUWE1Q7Z6Z7 4374 aaKnown RBP2.45□□□□□ -2.02
CLK3-212ENST00000563418 MT1HL1P0DM35 61 aa2.44□□□□□ -2.02
CLK3-212ENST00000563418 DNAH11Q96DT5 4516 aa2.43□□□□□ -2.02
CLK3-212ENST00000563418 DNAH1Q9P2D7 4330 aa2.43□□□□□ -2.02
CLK3-212ENST00000563418 DNAH7Q8WXX0 4024 aa2.43□□□□□ -2.02
CLK3-212ENST00000563418 MT3P25713 68 aa2.42□□□□□ -2.02
CLK3-212ENST00000563418 LCE3CQ5T5A8 94 aa2.41□□□□□ -2.02
CLK3-212ENST00000563418 DNAH10Q8IVF4 4471 aa2.41□□□□□ -2.02
CLK3-212ENST00000563418 DNAH8Q96JB1 4490 aa2.41□□□□□ -2.02
CLK3-212ENST00000563418 SPRR2GQ9BYE4 73 aa2.4□□□□□ -2.02
CLK3-212ENST00000563418 KRTAP10-5P60370 271 aa2.39□□□□□ -2.03
CLK3-212ENST00000563418 DNAH17Q9UFH2 4485 aa2.37□□□□□ -2.03
CLK3-212ENST00000563418 DYNC2H1Q8NCM8 4307 aaKnown RBP2.35□□□□□ -2.03
CLK3-212ENST00000563418 FRAS1Q86XX4 4008 aa2.35□□□□□ -2.03
CLK3-212ENST00000563418 VPS13BQ7Z7G8 4022 aa2.35□□□□□ -2.03
CLK3-212ENST00000563418 ZNF469Q96JG9 3925 aaPredicted RBP2.33□□□□□ -2.04
CLK3-212ENST00000563418 KRTAP4-5Q9BYR2 181 aa2.32□□□□□ -2.04
CLK3-212ENST00000563418 DNAH9Q9NYC9 4486 aa2.29□□□□□ -2.04
CLK3-212ENST00000563418 VPS13DQ5THJ4 4388 aa2.28□□□□□ -2.04
CLK3-212ENST00000563418 HYDINQ4G0P3 5121 aa2.28□□□□□ -2.04
CLK3-212ENST00000563418 PRKDCP78527 4128 aaKnown RBP2.27□□□□□ -2.05
CLK3-212ENST00000563418 CRCT1Q9UGL9 99 aa2.26□□□□□ -2.05
CLK3-212ENST00000563418 KRTAP12-4P60329 112 aa2.26□□□□□ -2.05
CLK3-212ENST00000563418 KRTAP19-5Q3LI72 72 aa2.25□□□□□ -2.05
CLK3-212ENST00000563418 PLECQ15149 4684 aaKnown RBP2.24□□□□□ -2.05
CLK3-212ENST00000563418 KMT2AQ03164 3969 aa2.24□□□□□ -2.05
CLK3-212ENST00000563418 DNAH5Q8TE73 4624 aa2.22□□□□□ -2.05
CLK3-212ENST00000563418 KRTAP17-1Q9BYP8 105 aa2.2□□□□□ -2.06
CLK3-212ENST00000563418 BIRC6Q9NR09 4857 aa2.18□□□□□ -2.06
CLK3-212ENST00000563418 PKHD1P08F94 4074 aa2.18□□□□□ -2.06
CLK3-212ENST00000563418 KRTAP19-8Q3LI54 63 aa2.17□□□□□ -2.06
CLK3-212ENST00000563418 DYNC1H1Q14204 4646 aaKnown RBP2.17□□□□□ -2.06
CLK3-212ENST00000563418 DNHD1Q96M86 4753 aa2.17□□□□□ -2.06
CLK3-212ENST00000563418 STARD9Q9P2P6 4700 aa2.17□□□□□ -2.06
CLK3-212ENST00000563418 SACSQ9NZJ4 4579 aa2.15□□□□□ -2.06
CLK3-212ENST00000563418 KRTAP4-1Q9BYQ7 146 aa2.15□□□□□ -2.07
CLK3-212ENST00000563418 FAT2Q9NYQ8 4349 aa2.14□□□□□ -2.07
CLK3-212ENST00000563418 MT2AP02795 61 aa2.14□□□□□ -2.07
CLK3-212ENST00000563418 FLGP20930 4061 aaPredicted RBP2.14□□□□□ -2.07
CLK3-212ENST00000563418 KRTAP19-1Q8IUB9 90 aa2.13□□□□□ -2.07
CLK3-212ENST00000563418 HSPG2P98160 4391 aa2.13□□□□□ -2.07
CLK3-212ENST00000563418 KRTAP9-6A0A140TA67 174 aa2.12□□□□□ -2.07
CLK3-212ENST00000563418 MT1XP80297 61 aa2.11□□□□□ -2.07
CLK3-212ENST00000563418 SPRR2EP22531 72 aa2.11□□□□□ -2.07
CLK3-212ENST00000563418 SPRR2BP35325 72 aa2.11□□□□□ -2.07
CLK3-212ENST00000563418 SPRR2AP35326 72 aa2.11□□□□□ -2.07
CLK3-212ENST00000563418 APOBP04114 4563 aaKnown RBP2.1□□□□□ -2.07
CLK3-212ENST00000563418 PKHD1L1Q86WI1 4243 aa2.1□□□□□ -2.07
CLK3-212ENST00000563418 KRTAP10-7P60409 375 aaPredicted RBP2.1□□□□□ -2.07
CLK3-212ENST00000563418 MT1HP80294 61 aa2.1□□□□□ -2.07
CLK3-212ENST00000563418 KIAA1109Q2LD37 5005 aa2.1□□□□□ -2.07
CLK3-212ENST00000563418 LCE3EQ5T5B0 92 aa2.09□□□□□ -2.07
CLK3-212ENST00000563418 PCLOQ9Y6V0 5065 aa2.09□□□□□ -2.07
CLK3-212ENST00000563418 KRTAP2-3P0C7H8 128 aa2.09□□□□□ -2.08
CLK3-212ENST00000563418 KRTAP2-4Q9BYR9 128 aa2.09□□□□□ -2.08
CLK3-212ENST00000563418 KRTAP2-1Q9BYU5 128 aa2.09□□□□□ -2.08
CLK3-212ENST00000563418 MT1FP04733 61 aa2.08□□□□□ -2.08
CLK3-212ENST00000563418 KRTAP9-2Q9BYQ4 174 aa2.08□□□□□ -2.08
CLK3-212ENST00000563418 LCE3DQ9BYE3 92 aa2.08□□□□□ -2.08
CLK3-212ENST00000563418 SPRR2FQ96RM1 72 aa2.07□□□□□ -2.08
CLK3-212ENST00000563418 LRP1Q07954 4544 aaKnown RBP2.07□□□□□ -2.08
CLK3-212ENST00000563418 HERC1Q15751 4861 aa2.06□□□□□ -2.08
CLK3-212ENST00000563418 PKD1P98161 4303 aa2.06□□□□□ -2.08
CLK3-212ENST00000563418 LRP1BQ9NZR2 4599 aa2.05□□□□□ -2.08
CLK3-212ENST00000563418 UBR4Q5T4S7 5183 aa2.05□□□□□ -2.08
CLK3-212ENST00000563418 SPRR2DP22532 72 aa2.04□□□□□ -2.08
CLK3-212ENST00000563418 FAT1Q14517 4588 aa2.04□□□□□ -2.08
CLK3-212ENST00000563418 LCE3BQ5TA77 95 aa2.02□□□□□ -2.09
CLK3-212ENST00000563418 RNF213Q63HN8 5207 aa2.01□□□□□ -2.09
CLK3-212ENST00000563418 MT1LQ93083 61 aa2.01□□□□□ -2.09
CLK3-212ENST00000563418 TNXBP22105 4242 aa2.01□□□□□ -2.09
CLK3-212ENST00000563418 ABCA13Q86UQ4 5058 aa2.01□□□□□ -2.09
CLK3-212ENST00000563418 HERC2O95714 4834 aa2□□□□□ -2.09
CLK3-212ENST00000563418 PRM1P04553 51 aa2□□□□□ -2.09
CLK3-212ENST00000563418 RYR2Q92736 4967 aa2□□□□□ -2.09
CLK3-212ENST00000563418 MT1BP07438 61 aa1.99□□□□□ -2.09
CLK3-212ENST00000563418 LCE2DQ5TA82 110 aaPredicted RBP1.98□□□□□ -2.09
CLK3-212ENST00000563418 FAT3Q8TDW7 4589 aa1.98□□□□□ -2.09
CLK3-212ENST00000563418 MT1EP04732 61 aa1.98□□□□□ -2.09
CLK3-212ENST00000563418 LCE2BO14633 110 aa1.97□□□□□ -2.09
CLK3-212ENST00000563418 MYCBP2O75592 4640 aa1.97□□□□□ -2.09
CLK3-212ENST00000563418 MT1GP13640 62 aa1.96□□□□□ -2.1
CLK3-212ENST00000563418 KRTAP9-7A8MTY7 169 aa1.95□□□□□ -2.1
CLK3-212ENST00000563418 KRTAP20-1Q3LI63 56 aa1.95□□□□□ -2.1
CLK3-212ENST00000563418 LCE2CQ5TA81 110 aa1.93□□□□□ -2.1
CLK3-212ENST00000563418 RYR3Q15413 4870 aa1.92□□□□□ -2.1
CLK3-212ENST00000563418 KMT2CQ8NEZ4 4911 aaKnown RBP1.91□□□□□ -2.1
CLK3-212ENST00000563418 MT1AP04731 61 aa1.91□□□□□ -2.1
CLK3-212ENST00000563418 KRTAP9-8Q9BYQ0 159 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms