RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SPRR2GQ9BYE4 73 aa7.03□□□□□ -1.28
VPS39-203ENST00000561797 Q5VV11 94 aa7.02□□□□□ -1.29
VPS39-203ENST00000561797 MT1BP07438 61 aa7.01□□□□□ -1.29
VPS39-203ENST00000561797 NDUFC1O43677 76 aa6.99□□□□□ -1.29
VPS39-203ENST00000561797 KRTAP19-8Q3LI54 63 aa6.99□□□□□ -1.29
VPS39-203ENST00000561797 OCR1Q9BZK8 76 aa6.98□□□□□ -1.29
VPS39-203ENST00000561797 MP68P56378 58 aa6.97□□□□□ -1.29
VPS39-203ENST00000561797 IMUPQ9GZP8 106 aa6.97□□□□□ -1.29
VPS39-203ENST00000561797 MACF1Q9UPN3 7388 aaKnown RBP6.97□□□□□ -1.29
VPS39-203ENST00000561797 J3QR89 54 aa6.95□□□□□ -1.3
VPS39-203ENST00000561797 A6NN06 94 aa6.94□□□□□ -1.3
VPS39-203ENST00000561797 A8MUN3 132 aa6.94□□□□□ -1.3
VPS39-203ENST00000561797 CRIPTQ9P021 101 aa6.92□□□□□ -1.3
VPS39-203ENST00000561797 H0YAA0 97 aa6.88□□□□□ -1.31
VPS39-203ENST00000561797 SCGB1A1P11684 91 aa6.88□□□□□ -1.31
VPS39-203ENST00000561797 SYNE2Q8WXH0 6885 aaKnown RBP6.88□□□□□ -1.31
VPS39-203ENST00000561797 KRTAP6-3Q3LI67 103 aa6.86□□□□□ -1.31
VPS39-203ENST00000561797 ADM2Q7Z4H4 148 aa6.86□□□□□ -1.31
VPS39-203ENST00000561797 H3BPC8 53 aa6.85□□□□□ -1.31
VPS39-203ENST00000561797 KRTAP10-5P60370 271 aa6.84□□□□□ -1.31
VPS39-203ENST00000561797 DMAC1Q96GE9 116 aa6.77□□□□□ -1.33
VPS39-203ENST00000561797 MT-ATP8P03928 68 aa6.74□□□□□ -1.33
VPS39-203ENST00000561797 P0C880 135 aa6.7□□□□□ -1.34
VPS39-203ENST00000561797 K7ERU9 68 aa6.69□□□□□ -1.34
VPS39-203ENST00000561797 R4GN34 69 aa6.68□□□□□ -1.34
VPS39-203ENST00000561797 C20orf197Q8N268 126 aa6.67□□□□□ -1.34
VPS39-203ENST00000561797 TRAV7A0A075B6U4 112 aa6.66□□□□□ -1.34
VPS39-203ENST00000561797 SMIM20Q8N5G0 67 aa6.65□□□□□ -1.34
VPS39-203ENST00000561797 M0QZ58 72 aa6.64□□□□□ -1.35
VPS39-203ENST00000561797 PLAC4Q8WY50 150 aa6.64□□□□□ -1.35
VPS39-203ENST00000561797 ACYP2P14621 99 aa6.63□□□□□ -1.35
VPS39-203ENST00000561797 KRTAP3-2Q9BYR7 98 aa6.63□□□□□ -1.35
VPS39-203ENST00000561797 PRO2289Q9P1D8 64 aa6.59□□□□□ -1.35
VPS39-203ENST00000561797 MT1XP80297 61 aa6.57□□□□□ -1.36
VPS39-203ENST00000561797 LINC01554Q52M75 96 aa6.56□□□□□ -1.36
VPS39-203ENST00000561797 SNURFQ9Y675 71 aa6.56□□□□□ -1.36
VPS39-203ENST00000561797 KRTAP5-9P26371 169 aa6.54□□□□□ -1.36
VPS39-203ENST00000561797 SPTSSBQ8NFR3 76 aa6.54□□□□□ -1.36
VPS39-203ENST00000561797 CHKB-CPT1BH3BT56 60 aa6.52□□□□□ -1.37
VPS39-203ENST00000561797 SERP2Q8N6R1 65 aa6.44□□□□□ -1.38
VPS39-203ENST00000561797 MUC12Q9UKN1 5478 aa6.43□□□□□ -1.38
VPS39-203ENST00000561797 NEBP20929 6669 aa6.43□□□□□ -1.38
VPS39-203ENST00000561797 SPANXA2-OT1Q8N9U9 137 aa6.42□□□□□ -1.38
VPS39-203ENST00000561797 SPRR2FQ96RM1 72 aa6.4□□□□□ -1.38
VPS39-203ENST00000561797 KRTAP12-2P59991 146 aa6.39□□□□□ -1.39
VPS39-203ENST00000561797 KRTAP8-1Q8IUC2 63 aa6.38□□□□□ -1.39
VPS39-203ENST00000561797 KRTAP20-1Q3LI63 56 aa6.37□□□□□ -1.39
VPS39-203ENST00000561797 KMT2DO14686 5537 aa6.35□□□□□ -1.39
VPS39-203ENST00000561797 KRTAP4-8A0A0G2JLE6 195 aa6.32□□□□□ -1.4
VPS39-203ENST00000561797 KRTAP4-8Q9BYQ9 185 aa6.32□□□□□ -1.4
VPS39-203ENST00000561797 SPRR2EP22531 72 aa6.31□□□□□ -1.4
VPS39-203ENST00000561797 SPRR2BP35325 72 aa6.31□□□□□ -1.4
VPS39-203ENST00000561797 SPRR2AP35326 72 aa6.31□□□□□ -1.4
VPS39-203ENST00000561797 KRTAP10-7P60409 375 aaPredicted RBP6.29□□□□□ -1.4
VPS39-203ENST00000561797 COA5Q86WW8 74 aa6.28□□□□□ -1.4
VPS39-203ENST00000561797 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
VPS39-203ENST00000561797 COX7CP15954 63 aa6.24□□□□□ -1.41
VPS39-203ENST00000561797 KRTAP10-12P60413 245 aa6.23□□□□□ -1.41
VPS39-203ENST00000561797 MDN1Q9NU22 5596 aa6.23□□□□□ -1.41
VPS39-203ENST00000561797 KRTAP2-3P0C7H8 128 aa6.2□□□□□ -1.42
VPS39-203ENST00000561797 LCE1AQ5T7P2 110 aa6.2□□□□□ -1.42
VPS39-203ENST00000561797 KRTAP2-4Q9BYR9 128 aa6.2□□□□□ -1.42
VPS39-203ENST00000561797 SEC61GP60059 68 aa6.17□□□□□ -1.42
VPS39-203ENST00000561797 CAMK2N1Q7Z7J9 78 aa6.16□□□□□ -1.42
VPS39-203ENST00000561797 CYSTM1Q9H1C7 97 aa6.16□□□□□ -1.42
VPS39-203ENST00000561797 SERP1Q9Y6X1 66 aa6.16□□□□□ -1.42
VPS39-203ENST00000561797 H7BZZ5 65 aa6.14□□□□□ -1.43
VPS39-203ENST00000561797 A0A0D9SG42 100 aa6.1□□□□□ -1.43
VPS39-203ENST00000561797 SPRR2DP22532 72 aa6.09□□□□□ -1.43
VPS39-203ENST00000561797 SPATA8Q6RVD6 105 aa6.09□□□□□ -1.43
VPS39-203ENST00000561797 A0A1B0GU33 70 aa6.06□□□□□ -1.44
VPS39-203ENST00000561797 ANAPC13Q9BS18 74 aa6.04□□□□□ -1.44
VPS39-203ENST00000561797 SPINT4Q6UDR6 99 aa6.02□□□□□ -1.45
VPS39-203ENST00000561797 KRTAP2-2Q9BYT5 123 aa6.01□□□□□ -1.45
VPS39-203ENST00000561797 KRTAP2-1Q9BYU5 128 aa6.01□□□□□ -1.45
VPS39-203ENST00000561797 A0A1B0GU69 56 aa5.97□□□□□ -1.45
VPS39-203ENST00000561797 KRTAP12-1P59990 96 aa5.95□□□□□ -1.46
VPS39-203ENST00000561797 CCDC179H3BU77 68 aa5.92□□□□□ -1.46
VPS39-203ENST00000561797 LCE3BQ5TA77 95 aa5.92□□□□□ -1.46
VPS39-203ENST00000561797 SMIM26A0A096LP01 95 aa5.88□□□□□ -1.47
VPS39-203ENST00000561797 A8MU10 97 aa5.87□□□□□ -1.47
VPS39-203ENST00000561797 KRTAP19-7Q3SYF9 63 aa5.87□□□□□ -1.47
VPS39-203ENST00000561797 MT1EP04732 61 aa5.82□□□□□ -1.48
VPS39-203ENST00000561797 ATP5EP56381 51 aaPredicted RBP5.81□□□□□ -1.48
VPS39-203ENST00000561797 LCE5AQ5TCM9 118 aa5.77□□□□□ -1.49
VPS39-203ENST00000561797 KRTAP19-3Q7Z4W3 81 aa5.77□□□□□ -1.49
VPS39-203ENST00000561797 PRR15LQ9BU68 103 aa5.77□□□□□ -1.49
VPS39-203ENST00000561797 KRTAP19-5Q3LI72 72 aa5.75□□□□□ -1.49
VPS39-203ENST00000561797 LINC01558Q9Y6Z2 57 aa5.72□□□□□ -1.49
VPS39-203ENST00000561797 C10orf95Q9H7T3 257 aa5.7□□□□□ -1.5
VPS39-203ENST00000561797 TNP1P09430 55 aa5.67□□□□□ -1.5
VPS39-203ENST00000561797 TMEM258P61165 79 aa5.66□□□□□ -1.5
VPS39-203ENST00000561797 MT1GP13640 62 aa5.64□□□□□ -1.51
VPS39-203ENST00000561797 LCE3AQ5TA76 89 aa5.64□□□□□ -1.51
VPS39-203ENST00000561797 PP632Q6XCG6 107 aa5.59□□□□□ -1.51
VPS39-203ENST00000561797 UQCR11O14957 56 aa5.58□□□□□ -1.52
VPS39-203ENST00000561797 DSTQ03001 7570 aaKnown RBP5.57□□□□□ -1.52
VPS39-203ENST00000561797 MT1LQ93083 61 aa5.57□□□□□ -1.52
VPS39-203ENST00000561797 MT1MQ8N339 61 aa5.55□□□□□ -1.52
VPS39-203ENST00000561797 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms