RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MUC12Q9UKN1 5478 aa7.72□□□□□ -1.17
HDDC3-205ENST00000559898 ACYP1P07311 99 aa7.7□□□□□ -1.18
HDDC3-205ENST00000559898 UQCRQO14949 82 aa7.69□□□□□ -1.18
HDDC3-205ENST00000559898 FAM240AA0A1B0GVK7 77 aa7.68□□□□□ -1.18
HDDC3-205ENST00000559898 NEBP20929 6669 aa7.68□□□□□ -1.18
HDDC3-205ENST00000559898 ATP5EP2Q5VTU8 51 aa7.67□□□□□ -1.18
HDDC3-205ENST00000559898 IMUPQ9GZP8 106 aa7.63□□□□□ -1.19
HDDC3-205ENST00000559898 CRIPTQ9P021 101 aa7.63□□□□□ -1.19
HDDC3-205ENST00000559898 NDUFC1O43677 76 aa7.61□□□□□ -1.19
HDDC3-205ENST00000559898 ATOX1O00244 68 aa7.6□□□□□ -1.19
HDDC3-205ENST00000559898 ADM2Q7Z4H4 148 aa7.6□□□□□ -1.19
HDDC3-205ENST00000559898 LINC00208Q96KT6 92 aa7.59□□□□□ -1.19
HDDC3-205ENST00000559898 H0YAA0 97 aa7.58□□□□□ -1.2
HDDC3-205ENST00000559898 KRTAP5-9P26371 169 aa7.58□□□□□ -1.2
HDDC3-205ENST00000559898 LINC00643Q86TS7 51 aa7.56□□□□□ -1.2
HDDC3-205ENST00000559898 OCR1Q9BZK8 76 aa7.55□□□□□ -1.2
HDDC3-205ENST00000559898 KMT2DO14686 5537 aa7.53□□□□□ -1.2
HDDC3-205ENST00000559898 A0A1B0GV90 55 aa7.52□□□□□ -1.21
HDDC3-205ENST00000559898 A8MUN3 132 aa7.5□□□□□ -1.21
HDDC3-205ENST00000559898 MT1XP80297 61 aa7.5□□□□□ -1.21
HDDC3-205ENST00000559898 MDN1Q9NU22 5596 aa7.49□□□□□ -1.21
HDDC3-205ENST00000559898 P0C880 135 aa7.47□□□□□ -1.21
HDDC3-205ENST00000559898 KRTAP20-1Q3LI63 56 aa7.45□□□□□ -1.22
HDDC3-205ENST00000559898 MP68P56378 58 aa7.43□□□□□ -1.22
HDDC3-205ENST00000559898 KRTAP3-2Q9BYR7 98 aa7.39□□□□□ -1.23
HDDC3-205ENST00000559898 DMAC1Q96GE9 116 aa7.35□□□□□ -1.23
HDDC3-205ENST00000559898 SPRR2FQ96RM1 72 aa7.35□□□□□ -1.23
HDDC3-205ENST00000559898 R4GN34 69 aa7.34□□□□□ -1.23
HDDC3-205ENST00000559898 PLAC4Q8WY50 150 aa7.33□□□□□ -1.24
HDDC3-205ENST00000559898 M0QZ58 72 aa7.32□□□□□ -1.24
HDDC3-205ENST00000559898 PRO2289Q9P1D8 64 aa7.31□□□□□ -1.24
HDDC3-205ENST00000559898 H3BPC8 53 aa7.29□□□□□ -1.24
HDDC3-205ENST00000559898 KRTAP4-8A0A0G2JLE6 195 aa7.27□□□□□ -1.25
HDDC3-205ENST00000559898 SPRR2EP22531 72 aa7.27□□□□□ -1.25
HDDC3-205ENST00000559898 SPRR2BP35325 72 aa7.27□□□□□ -1.25
HDDC3-205ENST00000559898 SPRR2AP35326 72 aa7.27□□□□□ -1.25
HDDC3-205ENST00000559898 KRTAP4-8Q9BYQ9 185 aa7.27□□□□□ -1.25
HDDC3-205ENST00000559898 LINC01554Q52M75 96 aa7.25□□□□□ -1.25
HDDC3-205ENST00000559898 KRTAP8-1Q8IUC2 63 aa7.25□□□□□ -1.25
HDDC3-205ENST00000559898 SCGB1A1P11684 91 aa7.24□□□□□ -1.25
HDDC3-205ENST00000559898 PCP4P48539 62 aa7.23□□□□□ -1.25
HDDC3-205ENST00000559898 KRTAP12-2P59991 146 aa7.23□□□□□ -1.25
HDDC3-205ENST00000559898 KRTAP2-3P0C7H8 128 aa7.2□□□□□ -1.26
HDDC3-205ENST00000559898 C20orf197Q8N268 126 aa7.2□□□□□ -1.26
HDDC3-205ENST00000559898 KRTAP2-4Q9BYR9 128 aa7.2□□□□□ -1.26
HDDC3-205ENST00000559898 J3QR89 54 aa7.18□□□□□ -1.26
HDDC3-205ENST00000559898 KRTAP10-7P60409 375 aaPredicted RBP7.18□□□□□ -1.26
HDDC3-205ENST00000559898 LCE1AQ5T7P2 110 aa7.18□□□□□ -1.26
HDDC3-205ENST00000559898 MT-ATP8P03928 68 aa7.16□□□□□ -1.26
HDDC3-205ENST00000559898 TRAV7A0A075B6U4 112 aa7.12□□□□□ -1.27
HDDC3-205ENST00000559898 ACYP2P14621 99 aa7.09□□□□□ -1.27
HDDC3-205ENST00000559898 KRTAP10-12P60413 245 aa7.07□□□□□ -1.28
HDDC3-205ENST00000559898 SNURFQ9Y675 71 aa7.02□□□□□ -1.29
HDDC3-205ENST00000559898 K7ERU9 68 aa7.01□□□□□ -1.29
HDDC3-205ENST00000559898 SPRR2DP22532 72 aa7.01□□□□□ -1.29
HDDC3-205ENST00000559898 SVIPQ8NHG7 77 aa7□□□□□ -1.29
HDDC3-205ENST00000559898 KRTAP13-4Q3LI77 160 aa6.98□□□□□ -1.29
HDDC3-205ENST00000559898 KRTAP2-2Q9BYT5 123 aa6.96□□□□□ -1.3
HDDC3-205ENST00000559898 KRTAP2-1Q9BYU5 128 aa6.96□□□□□ -1.3
HDDC3-205ENST00000559898 CHKB-CPT1BH3BT56 60 aa6.95□□□□□ -1.3
HDDC3-205ENST00000559898 SMIM20Q8N5G0 67 aa6.94□□□□□ -1.3
HDDC3-205ENST00000559898 SPTSSBQ8NFR3 76 aa6.94□□□□□ -1.3
HDDC3-205ENST00000559898 LCE3BQ5TA77 95 aa6.84□□□□□ -1.31
HDDC3-205ENST00000559898 SPANXA2-OT1Q8N9U9 137 aa6.81□□□□□ -1.32
HDDC3-205ENST00000559898 SERP2Q8N6R1 65 aa6.76□□□□□ -1.33
HDDC3-205ENST00000559898 CAMK2N1Q7Z7J9 78 aa6.72□□□□□ -1.33
HDDC3-205ENST00000559898 COA5Q86WW8 74 aa6.72□□□□□ -1.33
HDDC3-205ENST00000559898 KRTAP19-7Q3SYF9 63 aa6.71□□□□□ -1.34
HDDC3-205ENST00000559898 A0A0D9SG42 100 aa6.67□□□□□ -1.34
HDDC3-205ENST00000559898 SPATA8Q6RVD6 105 aa6.66□□□□□ -1.34
HDDC3-205ENST00000559898 MT1EP04732 61 aa6.63□□□□□ -1.35
HDDC3-205ENST00000559898 CYSTM1Q9H1C7 97 aa6.63□□□□□ -1.35
HDDC3-205ENST00000559898 LCE5AQ5TCM9 118 aa6.61□□□□□ -1.35
HDDC3-205ENST00000559898 KRTAP19-3Q7Z4W3 81 aa6.56□□□□□ -1.36
HDDC3-205ENST00000559898 KRTAP12-1P59990 96 aa6.54□□□□□ -1.36
HDDC3-205ENST00000559898 SPINT4Q6UDR6 99 aa6.54□□□□□ -1.36
HDDC3-205ENST00000559898 COX7CP15954 63 aa6.53□□□□□ -1.36
HDDC3-205ENST00000559898 SERP1Q9Y6X1 66 aa6.53□□□□□ -1.36
HDDC3-205ENST00000559898 A0A1B0GU33 70 aa6.51□□□□□ -1.37
HDDC3-205ENST00000559898 KRTAP19-5Q3LI72 72 aa6.51□□□□□ -1.37
HDDC3-205ENST00000559898 H7BZZ5 65 aa6.5□□□□□ -1.37
HDDC3-205ENST00000559898 SEC61GP60059 68 aa6.5□□□□□ -1.37
HDDC3-205ENST00000559898 DSTQ03001 7570 aaKnown RBP6.5□□□□□ -1.37
HDDC3-205ENST00000559898 ANAPC13Q9BS18 74 aa6.48□□□□□ -1.37
HDDC3-205ENST00000559898 KRTAP4-9Q9BYQ8 210 aa6.48□□□□□ -1.37
HDDC3-205ENST00000559898 A8MU10 97 aa6.41□□□□□ -1.38
HDDC3-205ENST00000559898 MT1GP13640 62 aa6.35□□□□□ -1.39
HDDC3-205ENST00000559898 CCDC179H3BU77 68 aa6.33□□□□□ -1.4
HDDC3-205ENST00000559898 RPS28P62857 69 aaKnown RBP6.33□□□□□ -1.4
HDDC3-205ENST00000559898 MT1MQ8N339 61 aa6.32□□□□□ -1.4
HDDC3-205ENST00000559898 MT1LQ93083 61 aa6.32□□□□□ -1.4
HDDC3-205ENST00000559898 A0A1B0GU69 56 aa6.31□□□□□ -1.4
HDDC3-205ENST00000559898 LCE3AQ5TA76 89 aa6.3□□□□□ -1.4
HDDC3-205ENST00000559898 KRTAP4-3Q9BYR4 195 aa6.3□□□□□ -1.4
HDDC3-205ENST00000559898 C10orf95Q9H7T3 257 aa6.3□□□□□ -1.4
HDDC3-205ENST00000559898 LCE1DQ5T752 114 aa6.27□□□□□ -1.41
HDDC3-205ENST00000559898 SMIM26A0A096LP01 95 aa6.25□□□□□ -1.41
HDDC3-205ENST00000559898 GPR98Q8WXG9 6306 aa6.23□□□□□ -1.41
HDDC3-205ENST00000559898 PP632Q6XCG6 107 aa6.22□□□□□ -1.41
HDDC3-205ENST00000559898 MT4P47944 62 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms