RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 COX6B2Q6YFQ2 88 aa6.72□□□□□ -1.33
LDLR-207ENST00000558013 CSAG1Q6PB30 78 aa6.71□□□□□ -1.34
LDLR-207ENST00000558013 LPAP08519 4548 aa6.7□□□□□ -1.34
LDLR-207ENST00000558013 LINC01554Q52M75 96 aa6.7□□□□□ -1.34
LDLR-207ENST00000558013 KRTAP10-8P60410 259 aa6.69□□□□□ -1.34
LDLR-207ENST00000558013 H1FX-AS1Q4G0G2 97 aa6.69□□□□□ -1.34
LDLR-207ENST00000558013 Q5VSD8 79 aa6.69□□□□□ -1.34
LDLR-207ENST00000558013 RYR1P21817 5038 aa6.69□□□□□ -1.34
LDLR-207ENST00000558013 KRTAP3-3Q9BYR6 98 aa6.64□□□□□ -1.35
LDLR-207ENST00000558013 XP32Q5T750 250 aa6.63□□□□□ -1.35
LDLR-207ENST00000558013 LRP2P98164 4655 aa6.62□□□□□ -1.35
LDLR-207ENST00000558013 RPL37P61927 97 aaKnown RBP6.6□□□□□ -1.35
LDLR-207ENST00000558013 CRIPTQ9P021 101 aa6.59□□□□□ -1.36
LDLR-207ENST00000558013 KRTAP10-6P60371 365 aaPredicted RBP6.57□□□□□ -1.36
LDLR-207ENST00000558013 KRTAP13-4Q3LI77 160 aa6.57□□□□□ -1.36
LDLR-207ENST00000558013 EPPK1P58107 5090 aaKnown RBP6.56□□□□□ -1.36
LDLR-207ENST00000558013 ABCA13Q86UQ4 5058 aa6.55□□□□□ -1.36
LDLR-207ENST00000558013 A0A0D9SG42 100 aa6.54□□□□□ -1.36
LDLR-207ENST00000558013 MT1HL1P0DM35 61 aa6.53□□□□□ -1.36
LDLR-207ENST00000558013 KRTAP3-2Q9BYR7 98 aa6.53□□□□□ -1.36
LDLR-207ENST00000558013 P0C880 135 aa6.5□□□□□ -1.37
LDLR-207ENST00000558013 S4R3F8 94 aa6.5□□□□□ -1.37
LDLR-207ENST00000558013 KRTAP25-1Q3LHN0 102 aa6.45□□□□□ -1.38
LDLR-207ENST00000558013 K7ERS5 55 aa6.42□□□□□ -1.38
LDLR-207ENST00000558013 KRTAP4-5Q9BYR2 181 aa6.37□□□□□ -1.39
LDLR-207ENST00000558013 ROMO1P60602 79 aa6.34□□□□□ -1.39
LDLR-207ENST00000558013 KRTAP12-2P59991 146 aa6.33□□□□□ -1.4
LDLR-207ENST00000558013 C10orf95Q9H7T3 257 aa6.3□□□□□ -1.4
LDLR-207ENST00000558013 TPRXLQ17RH7 258 aa6.28□□□□□ -1.4
LDLR-207ENST00000558013 SPINT4Q6UDR6 99 aa6.28□□□□□ -1.4
LDLR-207ENST00000558013 MUC2Q02817 5179 aa6.25□□□□□ -1.41
LDLR-207ENST00000558013 KRTAP12-1P59990 96 aa6.24□□□□□ -1.41
LDLR-207ENST00000558013 MUC17Q685J3 4493 aa6.19□□□□□ -1.42
LDLR-207ENST00000558013 HERC2O95714 4834 aa6.17□□□□□ -1.42
LDLR-207ENST00000558013 KRTAP4-1Q9BYQ7 146 aa6.16□□□□□ -1.42
LDLR-207ENST00000558013 LORP23490 312 aaPredicted RBP6.13□□□□□ -1.43
LDLR-207ENST00000558013 M0QZ58 72 aa6.12□□□□□ -1.43
LDLR-207ENST00000558013 R4GN34 69 aa6.06□□□□□ -1.44
LDLR-207ENST00000558013 SEC61BP60468 96 aaKnown RBP6.03□□□□□ -1.44
LDLR-207ENST00000558013 J3QL48 77 aa6.02□□□□□ -1.45
LDLR-207ENST00000558013 HERC1Q15751 4861 aa6.01□□□□□ -1.45
LDLR-207ENST00000558013 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
LDLR-207ENST00000558013 KRTAP19-2Q3LHN2 52 aa5.98□□□□□ -1.45
LDLR-207ENST00000558013 FAT4Q6V0I7 4981 aa5.92□□□□□ -1.46
LDLR-207ENST00000558013 PCLOQ9Y6V0 5065 aa5.92□□□□□ -1.46
LDLR-207ENST00000558013 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.47
LDLR-207ENST00000558013 FLGP20930 4061 aaPredicted RBP5.86□□□□□ -1.47
LDLR-207ENST00000558013 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
LDLR-207ENST00000558013 HMCN2Q8NDA2 5059 aa5.8□□□□□ -1.48
LDLR-207ENST00000558013 RNF213Q63HN8 5207 aa5.8□□□□□ -1.48
LDLR-207ENST00000558013 A0A0A0MQY5 61 aa5.79□□□□□ -1.48
LDLR-207ENST00000558013 CAMK2N1Q7Z7J9 78 aa5.77□□□□□ -1.49
LDLR-207ENST00000558013 UBR4Q5T4S7 5183 aa5.7□□□□□ -1.5
LDLR-207ENST00000558013 PLAC4Q8WY50 150 aa5.65□□□□□ -1.5
LDLR-207ENST00000558013 LCE2CQ5TA81 110 aa5.63□□□□□ -1.51
LDLR-207ENST00000558013 LUZP6Q538Z0 58 aa5.55□□□□□ -1.52
LDLR-207ENST00000558013 M0R2T5 61 aa5.51□□□□□ -1.53
LDLR-207ENST00000558013 PP632Q6XCG6 107 aa5.5□□□□□ -1.53
LDLR-207ENST00000558013 KRTAP19-1Q8IUB9 90 aa5.5□□□□□ -1.53
LDLR-207ENST00000558013 TNP1P09430 55 aa5.49□□□□□ -1.53
LDLR-207ENST00000558013 MT1HP80294 61 aa5.46□□□□□ -1.54
LDLR-207ENST00000558013 SPRR2GQ9BYE4 73 aa5.45□□□□□ -1.54
LDLR-207ENST00000558013 MT1FP04733 61 aa5.41□□□□□ -1.54
LDLR-207ENST00000558013 KRTAP10-10P60014 251 aa5.39□□□□□ -1.55
LDLR-207ENST00000558013 MT2AP02795 61 aa5.38□□□□□ -1.55
LDLR-207ENST00000558013 KRTAP9-8Q9BYQ0 159 aa5.35□□□□□ -1.55
LDLR-207ENST00000558013 LCE3AQ5TA76 89 aa5.3□□□□□ -1.56
LDLR-207ENST00000558013 KRTAP23-1A1A580 65 aa5.27□□□□□ -1.57
LDLR-207ENST00000558013 MT1BP07438 61 aa5.21□□□□□ -1.58
LDLR-207ENST00000558013 SPRR5A0A1B0GTR4 108 aa5.2□□□□□ -1.58
LDLR-207ENST00000558013 USH2AO75445 5202 aa5.19□□□□□ -1.58
LDLR-207ENST00000558013 KRTAP10-5P60370 271 aa5.18□□□□□ -1.58
LDLR-207ENST00000558013 KRTAP19-8Q3LI54 63 aa5.18□□□□□ -1.58
LDLR-207ENST00000558013 MT1XP80297 61 aa5.17□□□□□ -1.58
LDLR-207ENST00000558013 KRTAP9-3Q9BYQ3 159 aa5.1□□□□□ -1.59
LDLR-207ENST00000558013 KRTAP10-7P60409 375 aaPredicted RBP5.08□□□□□ -1.6
LDLR-207ENST00000558013 KMT2DO14686 5537 aa5.07□□□□□ -1.6
LDLR-207ENST00000558013 KRTAP8-1Q8IUC2 63 aa5.07□□□□□ -1.6
LDLR-207ENST00000558013 KRTAP10-12P60413 245 aa5.03□□□□□ -1.6
LDLR-207ENST00000558013 KRTAP12-3P60328 96 aa5□□□□□ -1.61
LDLR-207ENST00000558013 LCE2BO14633 110 aa4.96□□□□□ -1.62
LDLR-207ENST00000558013 PRO2289Q9P1D8 64 aa4.85□□□□□ -1.63
LDLR-207ENST00000558013 KRTAP19-5Q3LI72 72 aa4.84□□□□□ -1.63
LDLR-207ENST00000558013 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
LDLR-207ENST00000558013 KRTAP4-8Q9BYQ9 185 aa4.84□□□□□ -1.63
LDLR-207ENST00000558013 FSIP2Q5CZC0 6907 aa4.79□□□□□ -1.64
LDLR-207ENST00000558013 LCE2AQ5TA79 106 aaPredicted RBP4.78□□□□□ -1.64
LDLR-207ENST00000558013 LCE3CQ5T5A8 94 aa4.7□□□□□ -1.66
LDLR-207ENST00000558013 KRTAP4-7Q9BYR0 210 aa4.66□□□□□ -1.66
LDLR-207ENST00000558013 SSPOA2VEC9 5147 aa4.65□□□□□ -1.66
LDLR-207ENST00000558013 KRTAP9-6A8MVA2 160 aa4.65□□□□□ -1.67
LDLR-207ENST00000558013 KRTAP19-7Q3SYF9 63 aa4.62□□□□□ -1.67
LDLR-207ENST00000558013 INE1O15225 51 aa4.52□□□□□ -1.69
LDLR-207ENST00000558013 FCGBPQ9Y6R7 5405 aaPredicted RBP4.47□□□□□ -1.69
LDLR-207ENST00000558013 MUC12Q9UKN1 5478 aa4.46□□□□□ -1.69
LDLR-207ENST00000558013 MT1LQ93083 61 aa4.46□□□□□ -1.7
LDLR-207ENST00000558013 MT1EP04732 61 aa4.45□□□□□ -1.7
LDLR-207ENST00000558013 KRTAP4-3Q9BYR4 195 aa4.37□□□□□ -1.71
LDLR-207ENST00000558013 DSTQ03001 7570 aaKnown RBP4.36□□□□□ -1.71
LDLR-207ENST00000558013 KRTAP2-3P0C7H8 128 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms