RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 FAT2Q9NYQ8 4349 aa2.39□□□□□ -2.03
SYNE2-223ENST00000557005 ITPR2Q14571 2701 aa2.38□□□□□ -2.03
SYNE2-223ENST00000557005 TENM4Q6N022 2769 aa2.37□□□□□ -2.03
SYNE2-223ENST00000557005 NF1P21359 2839 aa2.37□□□□□ -2.03
SYNE2-223ENST00000557005 TENM2Q9NT68 2774 aa2.37□□□□□ -2.03
SYNE2-223ENST00000557005 OTOGQ6ZRI0 2925 aa2.37□□□□□ -2.03
SYNE2-223ENST00000557005 FLNCQ14315 2725 aa2.36□□□□□ -2.03
SYNE2-223ENST00000557005 LORP23490 312 aaPredicted RBP2.36□□□□□ -2.03
SYNE2-223ENST00000557005 FBN1P35555 2871 aaKnown RBP2.34□□□□□ -2.03
SYNE2-223ENST00000557005 KRTAP19-4Q3LI73 84 aa2.34□□□□□ -2.03
SYNE2-223ENST00000557005 PKD1P98161 4303 aa2.33□□□□□ -2.04
SYNE2-223ENST00000557005 KRTAP9-2Q9BYQ4 174 aa2.31□□□□□ -2.04
SYNE2-223ENST00000557005 PKHD1P08F94 4074 aa2.31□□□□□ -2.04
SYNE2-223ENST00000557005 APOBP04114 4563 aaKnown RBP2.31□□□□□ -2.04
SYNE2-223ENST00000557005 NIPBLQ6KC79 2804 aaeCLIP2.3□□□□□ -2.04
SYNE2-223ENST00000557005 KRTAP10-4P60372 401 aaPredicted RBP2.3□□□□□ -2.04
SYNE2-223ENST00000557005 TENM3Q9P273 2699 aa2.3□□□□□ -2.04
SYNE2-223ENST00000557005 HSPG2P98160 4391 aa2.29□□□□□ -2.04
SYNE2-223ENST00000557005 HELZ2Q9BYK8 2649 aaKnown RBP2.29□□□□□ -2.04
SYNE2-223ENST00000557005 NSD1Q96L73 2696 aaPredicted RBP2.29□□□□□ -2.04
SYNE2-223ENST00000557005 KRTAP10-10P60014 251 aa2.28□□□□□ -2.04
SYNE2-223ENST00000557005 TGP01266 2768 aa2.28□□□□□ -2.04
SYNE2-223ENST00000557005 LRP1BQ9NZR2 4599 aa2.28□□□□□ -2.04
SYNE2-223ENST00000557005 TNXBP22105 4242 aa2.26□□□□□ -2.05
SYNE2-223ENST00000557005 TENM1Q9UKZ4 2725 aa2.26□□□□□ -2.05
SYNE2-223ENST00000557005 DYNC1H1Q14204 4646 aaKnown RBP2.26□□□□□ -2.05
SYNE2-223ENST00000557005 FAT1Q14517 4588 aa2.26□□□□□ -2.05
SYNE2-223ENST00000557005 VWFP04275 2813 aa2.26□□□□□ -2.05
SYNE2-223ENST00000557005 STAB2Q8WWQ8 2551 aa2.26□□□□□ -2.05
SYNE2-223ENST00000557005 FLG2Q5D862 2391 aaPredicted RBP2.24□□□□□ -2.05
SYNE2-223ENST00000557005 FAT3Q8TDW7 4589 aa2.24□□□□□ -2.05
SYNE2-223ENST00000557005 COL6A5A8TX70 2615 aa2.24□□□□□ -2.05
SYNE2-223ENST00000557005 NBEAL1Q6ZS30 2694 aa2.24□□□□□ -2.05
SYNE2-223ENST00000557005 MT1HL1P0DM35 61 aa2.23□□□□□ -2.05
SYNE2-223ENST00000557005 KRTAP4-12Q9BQ66 201 aa2.23□□□□□ -2.05
SYNE2-223ENST00000557005 PKD1L1Q8TDX9 2849 aa2.23□□□□□ -2.05
SYNE2-223ENST00000557005 KRTAP4-8Q9BYQ9 185 aa2.22□□□□□ -2.05
SYNE2-223ENST00000557005 HYDINQ4G0P3 5121 aa2.22□□□□□ -2.05
SYNE2-223ENST00000557005 SRRM2Q9UQ35 2752 aaKnown RBP2.22□□□□□ -2.05
SYNE2-223ENST00000557005 KRTAP9-9Q9BYP9 154 aa2.22□□□□□ -2.05
SYNE2-223ENST00000557005 KRTAP9-4Q9BYQ2 154 aa2.22□□□□□ -2.05
SYNE2-223ENST00000557005 MYCBP2O75592 4640 aa2.21□□□□□ -2.06
SYNE2-223ENST00000557005 MGAM2Q2M2H8 2515 aa2.2□□□□□ -2.06
SYNE2-223ENST00000557005 KRTAP9-6A0A140TA67 174 aa2.2□□□□□ -2.06
SYNE2-223ENST00000557005 STAB1Q9NY15 2570 aa2.2□□□□□ -2.06
SYNE2-223ENST00000557005 KRTAP4-5Q9BYR2 181 aa2.18□□□□□ -2.06
SYNE2-223ENST00000557005 LCE3AQ5TA76 89 aa2.18□□□□□ -2.06
SYNE2-223ENST00000557005 MUC17Q685J3 4493 aa2.16□□□□□ -2.06
SYNE2-223ENST00000557005 PRO2289Q9P1D8 64 aa2.16□□□□□ -2.06
SYNE2-223ENST00000557005 DMBT1Q9UGM3 2413 aaPredicted RBP2.15□□□□□ -2.07
SYNE2-223ENST00000557005 LRP1Q07954 4544 aaKnown RBP2.14□□□□□ -2.07
SYNE2-223ENST00000557005 COL7A1Q02388 2944 aa2.14□□□□□ -2.07
SYNE2-223ENST00000557005 INE1O15225 51 aa2.13□□□□□ -2.07
SYNE2-223ENST00000557005 KRTAP4-1Q9BYQ7 146 aa2.13□□□□□ -2.07
SYNE2-223ENST00000557005 KRTAP19-1Q8IUB9 90 aa2.11□□□□□ -2.07
SYNE2-223ENST00000557005 MEGF8Q7Z7M0 2845 aa2.11□□□□□ -2.07
SYNE2-223ENST00000557005 LPAP08519 4548 aa2.11□□□□□ -2.07
SYNE2-223ENST00000557005 KRTAP10-12P60413 245 aa2.11□□□□□ -2.07
SYNE2-223ENST00000557005 KRTAP23-1A1A580 65 aa2.09□□□□□ -2.08
SYNE2-223ENST00000557005 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.08
SYNE2-223ENST00000557005 FBN3Q75N90 2809 aa2.07□□□□□ -2.08
SYNE2-223ENST00000557005 DNHD1Q96M86 4753 aa2.06□□□□□ -2.08
SYNE2-223ENST00000557005 KRTAP12-3P60328 96 aa2.06□□□□□ -2.08
SYNE2-223ENST00000557005 CRCT1Q9UGL9 99 aa2.03□□□□□ -2.08
SYNE2-223ENST00000557005 KRTAP4-8A0A0G2JLE6 195 aa2.02□□□□□ -2.09
SYNE2-223ENST00000557005 RYR2Q92736 4967 aa2□□□□□ -2.09
SYNE2-223ENST00000557005 MT1HP80294 61 aa1.98□□□□□ -2.09
SYNE2-223ENST00000557005 RYR3Q15413 4870 aa1.96□□□□□ -2.1
SYNE2-223ENST00000557005 FLGP20930 4061 aaPredicted RBP1.95□□□□□ -2.1
SYNE2-223ENST00000557005 SPRR2GQ9BYE4 73 aa1.94□□□□□ -2.1
SYNE2-223ENST00000557005 MT1FP04733 61 aa1.93□□□□□ -2.1
SYNE2-223ENST00000557005 KRTAP19-5Q3LI72 72 aa1.93□□□□□ -2.1
SYNE2-223ENST00000557005 KMT2CQ8NEZ4 4911 aaKnown RBP1.93□□□□□ -2.1
SYNE2-223ENST00000557005 MT2AP02795 61 aa1.93□□□□□ -2.1
SYNE2-223ENST00000557005 HERC1Q15751 4861 aa1.91□□□□□ -2.1
SYNE2-223ENST00000557005 KRTAP10-7P60409 375 aaPredicted RBP1.91□□□□□ -2.1
SYNE2-223ENST00000557005 LCE3CQ5T5A8 94 aa1.9□□□□□ -2.1
SYNE2-223ENST00000557005 GPR98Q8WXG9 6306 aa1.9□□□□□ -2.1
SYNE2-223ENST00000557005 LCE4AQ5TA78 99 aa1.9□□□□□ -2.1
SYNE2-223ENST00000557005 RYR1P21817 5038 aa1.9□□□□□ -2.11
SYNE2-223ENST00000557005 KRTAP4-7Q9BYR0 210 aa1.9□□□□□ -2.11
SYNE2-223ENST00000557005 KRTAP10-5P60370 271 aa1.89□□□□□ -2.11
SYNE2-223ENST00000557005 SPRR5A0A1B0GTR4 108 aa1.88□□□□□ -2.11
SYNE2-223ENST00000557005 MT3P25713 68 aa1.88□□□□□ -2.11
SYNE2-223ENST00000557005 MT1XP80297 61 aa1.85□□□□□ -2.11
SYNE2-223ENST00000557005 LRP2P98164 4655 aa1.84□□□□□ -2.12
SYNE2-223ENST00000557005 KRTAP5-3Q6L8H2 238 aa1.84□□□□□ -2.12
SYNE2-223ENST00000557005 KRTAP8-1Q8IUC2 63 aa1.82□□□□□ -2.12
SYNE2-223ENST00000557005 KRTAP4-9Q9BYQ8 210 aa1.82□□□□□ -2.12
SYNE2-223ENST00000557005 KRTAP19-2Q3LHN2 52 aa1.79□□□□□ -2.12
SYNE2-223ENST00000557005 MT1BP07438 61 aa1.79□□□□□ -2.12
SYNE2-223ENST00000557005 BIRC6Q9NR09 4857 aa1.78□□□□□ -2.12
SYNE2-223ENST00000557005 KRTAP19-8Q3LI54 63 aa1.78□□□□□ -2.12
SYNE2-223ENST00000557005 KRTAP9-8Q9BYQ0 159 aa1.77□□□□□ -2.13
SYNE2-223ENST00000557005 KRTAP4-11Q9BYQ6 195 aa1.76□□□□□ -2.13
SYNE2-223ENST00000557005 PCLOQ9Y6V0 5065 aa1.74□□□□□ -2.13
SYNE2-223ENST00000557005 LCE3BQ5TA77 95 aa1.74□□□□□ -2.13
SYNE2-223ENST00000557005 MT1GP13640 62 aa1.74□□□□□ -2.13
SYNE2-223ENST00000557005 HERC2O95714 4834 aa1.73□□□□□ -2.13
SYNE2-223ENST00000557005 EPPK1P58107 5090 aaKnown RBP1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms