RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 FAM236AA0A1B0GUQ0 79 aa4.92□□□□□ -1.62
LINC00239-201ENST00000556973 FAM236BA0A1B0GV22 79 aa4.92□□□□□ -1.62
LINC00239-201ENST00000556973 SMIM20Q8N5G0 67 aa4.92□□□□□ -1.62
LINC00239-201ENST00000556973 NDUFC1O43677 76 aa4.91□□□□□ -1.62
LINC00239-201ENST00000556973 TRAV7A0A075B6U4 112 aa4.88□□□□□ -1.63
LINC00239-201ENST00000556973 KRTAP19-1Q8IUB9 90 aa4.87□□□□□ -1.63
LINC00239-201ENST00000556973 SSPOA2VEC9 5147 aa4.86□□□□□ -1.63
LINC00239-201ENST00000556973 SVIPQ8NHG7 77 aa4.86□□□□□ -1.63
LINC00239-201ENST00000556973 KRTAP9-7A8MTY7 169 aa4.85□□□□□ -1.63
LINC00239-201ENST00000556973 H0YAA0 97 aa4.84□□□□□ -1.63
LINC00239-201ENST00000556973 KRTAP19-6Q3LI70 58 aa4.83□□□□□ -1.64
LINC00239-201ENST00000556973 DMAC1Q96GE9 116 aa4.83□□□□□ -1.64
LINC00239-201ENST00000556973 SPRR2GQ9BYE4 73 aa4.83□□□□□ -1.64
LINC00239-201ENST00000556973 CRIPTQ9P021 101 aa4.82□□□□□ -1.64
LINC00239-201ENST00000556973 ACYP2P14621 99 aa4.78□□□□□ -1.64
LINC00239-201ENST00000556973 FCGBPQ9Y6R7 5405 aaPredicted RBP4.77□□□□□ -1.65
LINC00239-201ENST00000556973 KRTAP19-8Q3LI54 63 aa4.77□□□□□ -1.65
LINC00239-201ENST00000556973 Q5VV11 94 aa4.77□□□□□ -1.65
LINC00239-201ENST00000556973 ADM2Q7Z4H4 148 aa4.77□□□□□ -1.65
LINC00239-201ENST00000556973 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.76□□□□□ -1.65
LINC00239-201ENST00000556973 SERP2Q8N6R1 65 aa4.76□□□□□ -1.65
LINC00239-201ENST00000556973 MACF1Q9UPN3 7388 aaKnown RBP4.76□□□□□ -1.65
LINC00239-201ENST00000556973 SNURFQ9Y675 71 aa4.75□□□□□ -1.65
LINC00239-201ENST00000556973 MT1BP07438 61 aa4.73□□□□□ -1.65
LINC00239-201ENST00000556973 C20orf197Q8N268 126 aa4.72□□□□□ -1.65
LINC00239-201ENST00000556973 KRTAP3-2Q9BYR7 98 aa4.72□□□□□ -1.65
LINC00239-201ENST00000556973 SPANXA2-OT1Q8N9U9 137 aa4.7□□□□□ -1.66
LINC00239-201ENST00000556973 SPTSSBQ8NFR3 76 aa4.7□□□□□ -1.66
LINC00239-201ENST00000556973 CHKB-CPT1BH3BT56 60 aa4.67□□□□□ -1.66
LINC00239-201ENST00000556973 A6NN06 94 aa4.66□□□□□ -1.66
LINC00239-201ENST00000556973 P0C880 135 aa4.66□□□□□ -1.66
LINC00239-201ENST00000556973 R4GN34 69 aa4.66□□□□□ -1.66
LINC00239-201ENST00000556973 SYNE2Q8WXH0 6885 aaKnown RBP4.65□□□□□ -1.66
LINC00239-201ENST00000556973 COX7CP15954 63 aa4.65□□□□□ -1.67
LINC00239-201ENST00000556973 KRTAP10-5P60370 271 aa4.62□□□□□ -1.67
LINC00239-201ENST00000556973 M0QZ58 72 aa4.6□□□□□ -1.67
LINC00239-201ENST00000556973 LOC100996750A0A140TA64 210 aa4.58□□□□□ -1.68
LINC00239-201ENST00000556973 PLAC4Q8WY50 150 aa4.58□□□□□ -1.68
LINC00239-201ENST00000556973 KRTAP4-6Q9BYQ5 205 aa4.58□□□□□ -1.68
LINC00239-201ENST00000556973 H7BZZ5 65 aa4.54□□□□□ -1.68
LINC00239-201ENST00000556973 COA5Q86WW8 74 aa4.54□□□□□ -1.68
LINC00239-201ENST00000556973 ANAPC13Q9BS18 74 aa4.54□□□□□ -1.68
LINC00239-201ENST00000556973 LINC01554Q52M75 96 aa4.52□□□□□ -1.69
LINC00239-201ENST00000556973 PRO2289Q9P1D8 64 aa4.52□□□□□ -1.69
LINC00239-201ENST00000556973 KRTAP6-3Q3LI67 103 aa4.51□□□□□ -1.69
LINC00239-201ENST00000556973 CYSTM1Q9H1C7 97 aa4.51□□□□□ -1.69
LINC00239-201ENST00000556973 MT1XP80297 61 aa4.47□□□□□ -1.69
LINC00239-201ENST00000556973 SEC61GP60059 68 aa4.46□□□□□ -1.7
LINC00239-201ENST00000556973 SERP1Q9Y6X1 66 aa4.44□□□□□ -1.7
LINC00239-201ENST00000556973 NEBP20929 6669 aa4.43□□□□□ -1.7
LINC00239-201ENST00000556973 CCDC179H3BU77 68 aa4.42□□□□□ -1.7
LINC00239-201ENST00000556973 KRTAP13-4Q3LI77 160 aa4.4□□□□□ -1.71
LINC00239-201ENST00000556973 ATP5EP56381 51 aaPredicted RBP4.36□□□□□ -1.71
LINC00239-201ENST00000556973 KRTAP12-2P59991 146 aa4.36□□□□□ -1.71
LINC00239-201ENST00000556973 A0A1B0GU33 70 aa4.35□□□□□ -1.71
LINC00239-201ENST00000556973 KRTAP5-9P26371 169 aa4.35□□□□□ -1.71
LINC00239-201ENST00000556973 A0A1B0GU69 56 aa4.33□□□□□ -1.72
LINC00239-201ENST00000556973 H3BS24 57 aa4.31□□□□□ -1.72
LINC00239-201ENST00000556973 SPATA8Q6RVD6 105 aa4.31□□□□□ -1.72
LINC00239-201ENST00000556973 KMT2DO14686 5537 aa4.3□□□□□ -1.72
LINC00239-201ENST00000556973 CAMK2N1Q7Z7J9 78 aa4.29□□□□□ -1.72
LINC00239-201ENST00000556973 A0A0D9SG42 100 aa4.28□□□□□ -1.72
LINC00239-201ENST00000556973 TMEM258P61165 79 aa4.28□□□□□ -1.72
LINC00239-201ENST00000556973 MUC12Q9UKN1 5478 aa4.28□□□□□ -1.72
LINC00239-201ENST00000556973 KRTAP10-7P60409 375 aaPredicted RBP4.27□□□□□ -1.73
LINC00239-201ENST00000556973 KRTAP10-12P60413 245 aa4.27□□□□□ -1.73
LINC00239-201ENST00000556973 KRTAP8-1Q8IUC2 63 aa4.27□□□□□ -1.73
LINC00239-201ENST00000556973 PRR15LQ9BU68 103 aa4.25□□□□□ -1.73
LINC00239-201ENST00000556973 SMIM26A0A096LP01 95 aa4.24□□□□□ -1.73
LINC00239-201ENST00000556973 KRTAP4-8A0A0G2JLE6 195 aa4.24□□□□□ -1.73
LINC00239-201ENST00000556973 SPINT4Q6UDR6 99 aa4.24□□□□□ -1.73
LINC00239-201ENST00000556973 SPRR2FQ96RM1 72 aa4.24□□□□□ -1.73
LINC00239-201ENST00000556973 KRTAP4-8Q9BYQ9 185 aa4.24□□□□□ -1.73
LINC00239-201ENST00000556973 LINC01558Q9Y6Z2 57 aa4.23□□□□□ -1.73
LINC00239-201ENST00000556973 GPR98Q8WXG9 6306 aa4.2□□□□□ -1.74
LINC00239-201ENST00000556973 KRTAP12-1P59990 96 aa4.2□□□□□ -1.74
LINC00239-201ENST00000556973 A8MU10 97 aa4.16□□□□□ -1.74
LINC00239-201ENST00000556973 MDN1Q9NU22 5596 aa4.15□□□□□ -1.74
LINC00239-201ENST00000556973 SPRR2EP22531 72 aa4.15□□□□□ -1.75
LINC00239-201ENST00000556973 SPRR2BP35325 72 aa4.15□□□□□ -1.75
LINC00239-201ENST00000556973 SPRR2AP35326 72 aa4.15□□□□□ -1.75
LINC00239-201ENST00000556973 KRTAP20-1Q3LI63 56 aa4.14□□□□□ -1.75
LINC00239-201ENST00000556973 LCE1AQ5T7P2 110 aa4.12□□□□□ -1.75
LINC00239-201ENST00000556973 UQCR11O14957 56 aa4.11□□□□□ -1.75
LINC00239-201ENST00000556973 V9GYY9 64 aa4.07□□□□□ -1.76
LINC00239-201ENST00000556973 KRTAP2-3P0C7H8 128 aa4.06□□□□□ -1.76
LINC00239-201ENST00000556973 KRTAP2-4Q9BYR9 128 aa4.06□□□□□ -1.76
LINC00239-201ENST00000556973 PCP4P48539 62 aa4.03□□□□□ -1.76
LINC00239-201ENST00000556973 Q1T7F1 81 aa4.03□□□□□ -1.76
LINC00239-201ENST00000556973 MIR22HGQ0VDD5 57 aa4.02□□□□□ -1.77
LINC00239-201ENST00000556973 C10orf95Q9H7T3 257 aa4.02□□□□□ -1.77
LINC00239-201ENST00000556973 SPRR2DP22532 72 aa4.01□□□□□ -1.77
LINC00239-201ENST00000556973 TNP1P09430 55 aa4□□□□□ -1.77
LINC00239-201ENST00000556973 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
LINC00239-201ENST00000556973 PSPHP1O15172 72 aa3.99□□□□□ -1.77
LINC00239-201ENST00000556973 MT1EP04732 61 aa3.96□□□□□ -1.78
LINC00239-201ENST00000556973 RPS28P62857 69 aaKnown RBP3.95□□□□□ -1.78
LINC00239-201ENST00000556973 KRTAP2-2Q9BYT5 123 aa3.95□□□□□ -1.78
LINC00239-201ENST00000556973 KRTAP2-1Q9BYU5 128 aa3.95□□□□□ -1.78
LINC00239-201ENST00000556973 K7ERS5 55 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms