RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.46□□□□□ -0.9
CCDC88C-210ENST00000555995 H3BPC8 53 aa9.43□□□□□ -0.9
CCDC88C-210ENST00000555995 KRTAP3-3Q9BYR6 98 aa9.43□□□□□ -0.9
CCDC88C-210ENST00000555995 NDUFC1O43677 76 aa9.41□□□□□ -0.9
CCDC88C-210ENST00000555995 SCGB1A1P11684 91 aa9.41□□□□□ -0.9
CCDC88C-210ENST00000555995 KLKP1Q107X0 134 aa9.39□□□□□ -0.91
CCDC88C-210ENST00000555995 IMUPQ9GZP8 106 aa9.37□□□□□ -0.91
CCDC88C-210ENST00000555995 K7ERU9 68 aa9.34□□□□□ -0.91
CCDC88C-210ENST00000555995 SPRR2GQ9BYE4 73 aa9.33□□□□□ -0.92
CCDC88C-210ENST00000555995 CRIPTQ9P021 101 aa9.33□□□□□ -0.92
CCDC88C-210ENST00000555995 KRTAP9-7A8MTY7 169 aa9.32□□□□□ -0.92
CCDC88C-210ENST00000555995 H0YAA0 97 aa9.31□□□□□ -0.92
CCDC88C-210ENST00000555995 Q5VV11 94 aa9.29□□□□□ -0.92
CCDC88C-210ENST00000555995 KRTAP19-8Q3LI54 63 aa9.24□□□□□ -0.93
CCDC88C-210ENST00000555995 SMIM20Q8N5G0 67 aa9.24□□□□□ -0.93
CCDC88C-210ENST00000555995 MT-ATP8P03928 68 aa9.19□□□□□ -0.94
CCDC88C-210ENST00000555995 DMAC1Q96GE9 116 aa9.19□□□□□ -0.94
CCDC88C-210ENST00000555995 MT1BP07438 61 aa9.18□□□□□ -0.94
CCDC88C-210ENST00000555995 MACF1Q9UPN3 7388 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-210ENST00000555995 TRAV7A0A075B6U4 112 aa9.15□□□□□ -0.94
CCDC88C-210ENST00000555995 ADM2Q7Z4H4 148 aa9.13□□□□□ -0.95
CCDC88C-210ENST00000555995 A6NN06 94 aa9.12□□□□□ -0.95
CCDC88C-210ENST00000555995 C20orf197Q8N268 126 aa9.09□□□□□ -0.95
CCDC88C-210ENST00000555995 SYNE2Q8WXH0 6885 aaKnown RBP9.02□□□□□ -0.96
CCDC88C-210ENST00000555995 ACYP2P14621 99 aa9.02□□□□□ -0.97
CCDC88C-210ENST00000555995 KRTAP10-5P60370 271 aa9□□□□□ -0.97
CCDC88C-210ENST00000555995 SPTSSBQ8NFR3 76 aa8.98□□□□□ -0.97
CCDC88C-210ENST00000555995 R4GN34 69 aa8.96□□□□□ -0.98
CCDC88C-210ENST00000555995 KRTAP6-3Q3LI67 103 aa8.93□□□□□ -0.98
CCDC88C-210ENST00000555995 P0C880 135 aa8.89□□□□□ -0.99
CCDC88C-210ENST00000555995 CHKB-CPT1BH3BT56 60 aa8.88□□□□□ -0.99
CCDC88C-210ENST00000555995 SERP2Q8N6R1 65 aa8.88□□□□□ -0.99
CCDC88C-210ENST00000555995 SNURFQ9Y675 71 aa8.88□□□□□ -0.99
CCDC88C-210ENST00000555995 SPANXA2-OT1Q8N9U9 137 aa8.86□□□□□ -0.99
CCDC88C-210ENST00000555995 M0QZ58 72 aa8.85□□□□□ -0.99
CCDC88C-210ENST00000555995 PLAC4Q8WY50 150 aa8.85□□□□□ -0.99
CCDC88C-210ENST00000555995 PRO2289Q9P1D8 64 aa8.83□□□□□ -1
CCDC88C-210ENST00000555995 KRTAP3-2Q9BYR7 98 aa8.81□□□□□ -1
CCDC88C-210ENST00000555995 LINC01554Q52M75 96 aa8.69□□□□□ -1.02
CCDC88C-210ENST00000555995 MT1XP80297 61 aa8.65□□□□□ -1.02
CCDC88C-210ENST00000555995 COX7CP15954 63 aa8.63□□□□□ -1.03
CCDC88C-210ENST00000555995 KRTAP5-9P26371 169 aa8.57□□□□□ -1.04
CCDC88C-210ENST00000555995 COA5Q86WW8 74 aa8.55□□□□□ -1.04
CCDC88C-210ENST00000555995 MUC12Q9UKN1 5478 aa8.53□□□□□ -1.04
CCDC88C-210ENST00000555995 NEBP20929 6669 aa8.52□□□□□ -1.05
CCDC88C-210ENST00000555995 KRTAP12-2P59991 146 aa8.51□□□□□ -1.05
CCDC88C-210ENST00000555995 SEC61GP60059 68 aa8.45□□□□□ -1.06
CCDC88C-210ENST00000555995 H7BZZ5 65 aa8.44□□□□□ -1.06
CCDC88C-210ENST00000555995 KMT2DO14686 5537 aa8.42□□□□□ -1.06
CCDC88C-210ENST00000555995 SERP1Q9Y6X1 66 aa8.41□□□□□ -1.06
CCDC88C-210ENST00000555995 ANAPC13Q9BS18 74 aa8.39□□□□□ -1.07
CCDC88C-210ENST00000555995 MDN1Q9NU22 5596 aa8.38□□□□□ -1.07
CCDC88C-210ENST00000555995 KRTAP8-1Q8IUC2 63 aa8.37□□□□□ -1.07
CCDC88C-210ENST00000555995 CYSTM1Q9H1C7 97 aa8.35□□□□□ -1.07
CCDC88C-210ENST00000555995 KRTAP13-4Q3LI77 160 aa8.33□□□□□ -1.08
CCDC88C-210ENST00000555995 SPRR2FQ96RM1 72 aa8.33□□□□□ -1.08
CCDC88C-210ENST00000555995 CAMK2N1Q7Z7J9 78 aa8.26□□□□□ -1.09
CCDC88C-210ENST00000555995 KRTAP10-12P60413 245 aa8.25□□□□□ -1.09
CCDC88C-210ENST00000555995 KRTAP10-7P60409 375 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-210ENST00000555995 A0A1B0GU33 70 aa8.22□□□□□ -1.09
CCDC88C-210ENST00000555995 KRTAP20-1Q3LI63 56 aa8.21□□□□□ -1.1
CCDC88C-210ENST00000555995 SPRR2EP22531 72 aa8.19□□□□□ -1.1
CCDC88C-210ENST00000555995 SPRR2BP35325 72 aa8.19□□□□□ -1.1
CCDC88C-210ENST00000555995 SPRR2AP35326 72 aa8.19□□□□□ -1.1
CCDC88C-210ENST00000555995 ATP5EP56381 51 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-210ENST00000555995 KRTAP4-8A0A0G2JLE6 195 aa8.17□□□□□ -1.1
CCDC88C-210ENST00000555995 KRTAP4-8Q9BYQ9 185 aa8.17□□□□□ -1.1
CCDC88C-210ENST00000555995 A0A1B0GU69 56 aa8.15□□□□□ -1.1
CCDC88C-210ENST00000555995 A0A0D9SG42 100 aa8.14□□□□□ -1.11
CCDC88C-210ENST00000555995 CCDC179H3BU77 68 aa8.13□□□□□ -1.11
CCDC88C-210ENST00000555995 SPATA8Q6RVD6 105 aa8.12□□□□□ -1.11
CCDC88C-210ENST00000555995 LCE1AQ5T7P2 110 aa8.06□□□□□ -1.12
CCDC88C-210ENST00000555995 SMIM26A0A096LP01 95 aa8.05□□□□□ -1.12
CCDC88C-210ENST00000555995 SPINT4Q6UDR6 99 aa8.05□□□□□ -1.12
CCDC88C-210ENST00000555995 KRTAP2-3P0C7H8 128 aa8.04□□□□□ -1.12
CCDC88C-210ENST00000555995 KRTAP2-4Q9BYR9 128 aa8.04□□□□□ -1.12
CCDC88C-210ENST00000555995 PRR15LQ9BU68 103 aa8.01□□□□□ -1.13
CCDC88C-210ENST00000555995 KRTAP12-1P59990 96 aa7.98□□□□□ -1.13
CCDC88C-210ENST00000555995 TMEM258P61165 79 aa7.96□□□□□ -1.14
CCDC88C-210ENST00000555995 SPRR2DP22532 72 aa7.92□□□□□ -1.14
CCDC88C-210ENST00000555995 LINC01558Q9Y6Z2 57 aa7.87□□□□□ -1.15
CCDC88C-210ENST00000555995 A8MU10 97 aa7.83□□□□□ -1.16
CCDC88C-210ENST00000555995 KRTAP2-2Q9BYT5 123 aa7.79□□□□□ -1.16
CCDC88C-210ENST00000555995 KRTAP2-1Q9BYU5 128 aa7.79□□□□□ -1.16
CCDC88C-210ENST00000555995 KRTAP19-7Q3SYF9 63 aa7.72□□□□□ -1.17
CCDC88C-210ENST00000555995 UQCR11O14957 56 aa7.71□□□□□ -1.18
CCDC88C-210ENST00000555995 LCE3BQ5TA77 95 aa7.69□□□□□ -1.18
CCDC88C-210ENST00000555995 MT1EP04732 61 aa7.67□□□□□ -1.18
CCDC88C-210ENST00000555995 TNP1P09430 55 aa7.66□□□□□ -1.18
CCDC88C-210ENST00000555995 KRTAP19-3Q7Z4W3 81 aa7.61□□□□□ -1.19
CCDC88C-210ENST00000555995 LCE5AQ5TCM9 118 aa7.6□□□□□ -1.19
CCDC88C-210ENST00000555995 C10orf95Q9H7T3 257 aa7.59□□□□□ -1.19
CCDC88C-210ENST00000555995 KRTAP19-5Q3LI72 72 aa7.57□□□□□ -1.2
CCDC88C-210ENST00000555995 V9GYY9 64 aa7.57□□□□□ -1.2
CCDC88C-210ENST00000555995 MIR22HGQ0VDD5 57 aa7.51□□□□□ -1.21
CCDC88C-210ENST00000555995 PP632Q6XCG6 107 aa7.48□□□□□ -1.21
CCDC88C-210ENST00000555995 MT1GP13640 62 aa7.47□□□□□ -1.21
CCDC88C-210ENST00000555995 LCE3AQ5TA76 89 aa7.47□□□□□ -1.21
CCDC88C-210ENST00000555995 K7ERS5 55 aa7.45□□□□□ -1.22
CCDC88C-210ENST00000555995 Q1T7F1 81 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms