RNA–Protein interactions for RNA: ENST00000554879.5

PCNX1-209, Transcript of pecanex 1, humanhuman

TSL 1 (best)

Gene PCNX1, Length 4,431 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-209ENST00000554879 KRTAP10-8P60410 259 aa8.96□□□□□ -0.97
PCNX1-209ENST00000554879 KMT2CQ8NEZ4 4911 aaKnown RBP8.95□□□□□ -0.98
PCNX1-209ENST00000554879 PKHD1P08F94 4074 aa8.95□□□□□ -0.98
PCNX1-209ENST00000554879 RPL37P61927 97 aaKnown RBP8.91□□□□□ -0.98
PCNX1-209ENST00000554879 VPS13BQ7Z7G8 4022 aa8.9□□□□□ -0.98
PCNX1-209ENST00000554879 RYR2Q92736 4967 aa8.88□□□□□ -0.99
PCNX1-209ENST00000554879 KIAA1109Q2LD37 5005 aa8.85□□□□□ -0.99
PCNX1-209ENST00000554879 FAT2Q9NYQ8 4349 aa8.84□□□□□ -0.99
PCNX1-209ENST00000554879 XP32Q5T750 250 aa8.82□□□□□ -1
PCNX1-209ENST00000554879 KRTAP13-3Q3SY46 172 aa8.81□□□□□ -1
PCNX1-209ENST00000554879 KRTAP4-5Q9BYR2 181 aa8.8□□□□□ -1
PCNX1-209ENST00000554879 RYR3Q15413 4870 aa8.77□□□□□ -1.01
PCNX1-209ENST00000554879 APOBP04114 4563 aaKnown RBP8.77□□□□□ -1.01
PCNX1-209ENST00000554879 PKD1P98161 4303 aa8.76□□□□□ -1.01
PCNX1-209ENST00000554879 SEC61BP60468 96 aaKnown RBP8.74□□□□□ -1.01
PCNX1-209ENST00000554879 MT1HL1P0DM35 61 aa8.72□□□□□ -1.01
PCNX1-209ENST00000554879 CAMK2N1Q7Z7J9 78 aa8.71□□□□□ -1.02
PCNX1-209ENST00000554879 S4R3F8 94 aa8.66□□□□□ -1.02
PCNX1-209ENST00000554879 RYR1P21817 5038 aa8.66□□□□□ -1.02
PCNX1-209ENST00000554879 LRP1Q07954 4544 aaKnown RBP8.65□□□□□ -1.02
PCNX1-209ENST00000554879 TPRXLQ17RH7 258 aa8.63□□□□□ -1.03
PCNX1-209ENST00000554879 KRTAP17-1Q9BYP8 105 aa8.62□□□□□ -1.03
PCNX1-209ENST00000554879 MYCBP2O75592 4640 aa8.54□□□□□ -1.04
PCNX1-209ENST00000554879 HSPG2P98160 4391 aa8.46□□□□□ -1.06
PCNX1-209ENST00000554879 EPPK1P58107 5090 aaKnown RBP8.44□□□□□ -1.06
PCNX1-209ENST00000554879 FAT3Q8TDW7 4589 aa8.42□□□□□ -1.06
PCNX1-209ENST00000554879 M0R2T5 61 aa8.41□□□□□ -1.06
PCNX1-209ENST00000554879 KRTAP3-1Q9BYR8 98 aa8.41□□□□□ -1.06
PCNX1-209ENST00000554879 KRTAP15-1Q3LI76 137 aa8.4□□□□□ -1.06
PCNX1-209ENST00000554879 R4GN34 69 aa8.34□□□□□ -1.07
PCNX1-209ENST00000554879 PLAC4Q8WY50 150 aa8.34□□□□□ -1.07
PCNX1-209ENST00000554879 HERC2O95714 4834 aa8.26□□□□□ -1.09
PCNX1-209ENST00000554879 M0QZ58 72 aa8.21□□□□□ -1.1
PCNX1-209ENST00000554879 KRTAP13-4Q3LI77 160 aa8.19□□□□□ -1.1
PCNX1-209ENST00000554879 KRTAP12-2P59991 146 aa8.18□□□□□ -1.1
PCNX1-209ENST00000554879 PKHD1L1Q86WI1 4243 aa8.13□□□□□ -1.11
PCNX1-209ENST00000554879 LRP2P98164 4655 aa8.1□□□□□ -1.11
PCNX1-209ENST00000554879 BIRC6Q9NR09 4857 aa8.1□□□□□ -1.11
PCNX1-209ENST00000554879 ABCA13Q86UQ4 5058 aa8.09□□□□□ -1.11
PCNX1-209ENST00000554879 TNXBP22105 4242 aa8.05□□□□□ -1.12
PCNX1-209ENST00000554879 KRTAP3-3Q9BYR6 98 aa8.01□□□□□ -1.13
PCNX1-209ENST00000554879 LPAP08519 4548 aa7.99□□□□□ -1.13
PCNX1-209ENST00000554879 KRTAP10-6P60371 365 aaPredicted RBP7.98□□□□□ -1.13
PCNX1-209ENST00000554879 KRTAP4-1Q9BYQ7 146 aa7.96□□□□□ -1.14
PCNX1-209ENST00000554879 KRTAP12-1P59990 96 aa7.94□□□□□ -1.14
PCNX1-209ENST00000554879 KRTAP3-2Q9BYR7 98 aa7.81□□□□□ -1.16
PCNX1-209ENST00000554879 HERC1Q15751 4861 aa7.75□□□□□ -1.17
PCNX1-209ENST00000554879 KRTAP10-10P60014 251 aa7.75□□□□□ -1.17
PCNX1-209ENST00000554879 PCLOQ9Y6V0 5065 aa7.65□□□□□ -1.19
PCNX1-209ENST00000554879 LORP23490 312 aaPredicted RBP7.6□□□□□ -1.19
PCNX1-209ENST00000554879 PP632Q6XCG6 107 aa7.6□□□□□ -1.19
PCNX1-209ENST00000554879 MUC2Q02817 5179 aa7.57□□□□□ -1.2
PCNX1-209ENST00000554879 TNP1P09430 55 aa7.53□□□□□ -1.2
PCNX1-209ENST00000554879 RNF213Q63HN8 5207 aa7.46□□□□□ -1.22
PCNX1-209ENST00000554879 HMCN2Q8NDA2 5059 aa7.4□□□□□ -1.22
PCNX1-209ENST00000554879 UBR4Q5T4S7 5183 aa7.39□□□□□ -1.23
PCNX1-209ENST00000554879 MT1HP80294 61 aa7.38□□□□□ -1.23
PCNX1-209ENST00000554879 PRO2289Q9P1D8 64 aa7.38□□□□□ -1.23
PCNX1-209ENST00000554879 FAT4Q6V0I7 4981 aa7.29□□□□□ -1.24
PCNX1-209ENST00000554879 KRTAP19-2Q3LHN2 52 aa7.27□□□□□ -1.25
PCNX1-209ENST00000554879 LCE2CQ5TA81 110 aa7.25□□□□□ -1.25
PCNX1-209ENST00000554879 MUC17Q685J3 4493 aa7.21□□□□□ -1.25
PCNX1-209ENST00000554879 MT2AP02795 61 aa7.19□□□□□ -1.26
PCNX1-209ENST00000554879 MT1FP04733 61 aa7.16□□□□□ -1.26
PCNX1-209ENST00000554879 FLGP20930 4061 aaPredicted RBP7.15□□□□□ -1.26
PCNX1-209ENST00000554879 INE1O15225 51 aa7.08□□□□□ -1.28
PCNX1-209ENST00000554879 SPRR2GQ9BYE4 73 aa7□□□□□ -1.29
PCNX1-209ENST00000554879 KRTAP19-1Q8IUB9 90 aa6.97□□□□□ -1.29
PCNX1-209ENST00000554879 KRTAP9-8Q9BYQ0 159 aa6.97□□□□□ -1.29
PCNX1-209ENST00000554879 KRTAP10-12P60413 245 aa6.71□□□□□ -1.33
PCNX1-209ENST00000554879 FSIP2Q5CZC0 6907 aa6.71□□□□□ -1.33
PCNX1-209ENST00000554879 KRTAP9-3Q9BYQ3 159 aa6.71□□□□□ -1.34
PCNX1-209ENST00000554879 LCE3AQ5TA76 89 aa6.7□□□□□ -1.34
PCNX1-209ENST00000554879 KRTAP19-8Q3LI54 63 aa6.69□□□□□ -1.34
PCNX1-209ENST00000554879 MT1BP07438 61 aa6.68□□□□□ -1.34
PCNX1-209ENST00000554879 LCE2AQ5TA79 106 aaPredicted RBP6.59□□□□□ -1.35
PCNX1-209ENST00000554879 LCE2BO14633 110 aa6.57□□□□□ -1.36
PCNX1-209ENST00000554879 MT1XP80297 61 aa6.56□□□□□ -1.36
PCNX1-209ENST00000554879 KRTAP10-5P60370 271 aa6.53□□□□□ -1.36
PCNX1-209ENST00000554879 SPRR5A0A1B0GTR4 108 aa6.5□□□□□ -1.37
PCNX1-209ENST00000554879 KRTAP12-3P60328 96 aa6.49□□□□□ -1.37
PCNX1-209ENST00000554879 KRTAP10-7P60409 375 aaPredicted RBP6.48□□□□□ -1.37
PCNX1-209ENST00000554879 KRTAP23-1A1A580 65 aa6.46□□□□□ -1.38
PCNX1-209ENST00000554879 USH2AO75445 5202 aa6.45□□□□□ -1.38
PCNX1-209ENST00000554879 CRCT1Q9UGL9 99 aa6.35□□□□□ -1.39
PCNX1-209ENST00000554879 KRTAP4-8A0A0G2JLE6 195 aa6.28□□□□□ -1.4
PCNX1-209ENST00000554879 KRTAP4-8Q9BYQ9 185 aa6.28□□□□□ -1.4
PCNX1-209ENST00000554879 KRTAP8-1Q8IUC2 63 aa6.26□□□□□ -1.41
PCNX1-209ENST00000554879 KRTAP19-5Q3LI72 72 aa6.26□□□□□ -1.41
PCNX1-209ENST00000554879 OBSCNQ5VST9 7968 aa6.18□□□□□ -1.42
PCNX1-209ENST00000554879 KMT2DO14686 5537 aa6.08□□□□□ -1.44
PCNX1-209ENST00000554879 SYNE1Q8NF91 8797 aaKnown RBP6□□□□□ -1.45
PCNX1-209ENST00000554879 SPRR2FQ96RM1 72 aa6□□□□□ -1.45
PCNX1-209ENST00000554879 KRTAP19-6Q3LI70 58 aa5.99□□□□□ -1.45
PCNX1-209ENST00000554879 SSPOA2VEC9 5147 aa5.97□□□□□ -1.45
PCNX1-209ENST00000554879 KRTAP9-2Q9BYQ4 174 aa5.96□□□□□ -1.46
PCNX1-209ENST00000554879 LCE2DQ5TA82 110 aaPredicted RBP5.91□□□□□ -1.46
PCNX1-209ENST00000554879 LCE3CQ5T5A8 94 aa5.9□□□□□ -1.46
PCNX1-209ENST00000554879 KRTAP4-7Q9BYR0 210 aa5.82□□□□□ -1.48
PCNX1-209ENST00000554879 KRTAP19-7Q3SYF9 63 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms