RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 KRTAP13-4Q3LI77 160 aa8.16□□□□□ -1.1
SYNE3-203ENST00000554873 DYNC1H1Q14204 4646 aaKnown RBP8.16□□□□□ -1.1
SYNE3-203ENST00000554873 KRTAP10-6P60371 365 aaPredicted RBP8.15□□□□□ -1.1
SYNE3-203ENST00000554873 FAT1Q14517 4588 aa8.15□□□□□ -1.1
SYNE3-203ENST00000554873 PKHD1L1Q86WI1 4243 aa8.15□□□□□ -1.11
SYNE3-203ENST00000554873 KRTAP10-4P60372 401 aaPredicted RBP8.09□□□□□ -1.11
SYNE3-203ENST00000554873 APOBP04114 4563 aaKnown RBP8.09□□□□□ -1.11
SYNE3-203ENST00000554873 LUZP6Q538Z0 58 aa8.07□□□□□ -1.12
SYNE3-203ENST00000554873 S4R3F8 94 aa8.06□□□□□ -1.12
SYNE3-203ENST00000554873 KRTAP3-2Q9BYR7 98 aa8.02□□□□□ -1.12
SYNE3-203ENST00000554873 A0A1B0GVY2 172 aa7.99□□□□□ -1.13
SYNE3-203ENST00000554873 KRTAP12-2P59991 146 aa7.97□□□□□ -1.13
SYNE3-203ENST00000554873 DMBT1Q9UGM3 2413 aaPredicted RBP7.97□□□□□ -1.13
SYNE3-203ENST00000554873 KRTAP3-3Q9BYR6 98 aa7.97□□□□□ -1.13
SYNE3-203ENST00000554873 XP32Q5T750 250 aa7.96□□□□□ -1.13
SYNE3-203ENST00000554873 FAT3Q8TDW7 4589 aa7.89□□□□□ -1.15
SYNE3-203ENST00000554873 KRTAP12-1P59990 96 aa7.88□□□□□ -1.15
SYNE3-203ENST00000554873 LRP1Q07954 4544 aaKnown RBP7.85□□□□□ -1.15
SYNE3-203ENST00000554873 HSPG2P98160 4391 aa7.83□□□□□ -1.16
SYNE3-203ENST00000554873 TNXBP22105 4242 aa7.83□□□□□ -1.16
SYNE3-203ENST00000554873 KMT2CQ8NEZ4 4911 aaKnown RBP7.82□□□□□ -1.16
SYNE3-203ENST00000554873 KRTAP10-8P60410 259 aa7.79□□□□□ -1.16
SYNE3-203ENST00000554873 RYR2Q92736 4967 aa7.76□□□□□ -1.17
SYNE3-203ENST00000554873 PLAC4Q8WY50 150 aa7.76□□□□□ -1.17
SYNE3-203ENST00000554873 MYCBP2O75592 4640 aa7.75□□□□□ -1.17
SYNE3-203ENST00000554873 Q5VSD8 79 aa7.65□□□□□ -1.18
SYNE3-203ENST00000554873 M0QZ58 72 aa7.65□□□□□ -1.19
SYNE3-203ENST00000554873 RYR3Q15413 4870 aa7.58□□□□□ -1.2
SYNE3-203ENST00000554873 KRTAP17-1Q9BYP8 105 aa7.56□□□□□ -1.2
SYNE3-203ENST00000554873 SEC61BP60468 96 aaKnown RBP7.53□□□□□ -1.2
SYNE3-203ENST00000554873 LPAP08519 4548 aa7.52□□□□□ -1.21
SYNE3-203ENST00000554873 RYR1P21817 5038 aa7.51□□□□□ -1.21
SYNE3-203ENST00000554873 MT1HL1P0DM35 61 aa7.5□□□□□ -1.21
SYNE3-203ENST00000554873 LRP2P98164 4655 aa7.45□□□□□ -1.22
SYNE3-203ENST00000554873 KIAA1109Q2LD37 5005 aa7.4□□□□□ -1.23
SYNE3-203ENST00000554873 PP632Q6XCG6 107 aa7.35□□□□□ -1.23
SYNE3-203ENST00000554873 EPPK1P58107 5090 aaKnown RBP7.34□□□□□ -1.24
SYNE3-203ENST00000554873 R4GN34 69 aa7.28□□□□□ -1.24
SYNE3-203ENST00000554873 BIRC6Q9NR09 4857 aa7.26□□□□□ -1.25
SYNE3-203ENST00000554873 ABCA13Q86UQ4 5058 aa7.2□□□□□ -1.26
SYNE3-203ENST00000554873 CAMK2N1Q7Z7J9 78 aa7.19□□□□□ -1.26
SYNE3-203ENST00000554873 LORP23490 312 aaPredicted RBP7.13□□□□□ -1.27
SYNE3-203ENST00000554873 SPRR5A0A1B0GTR4 108 aa7.12□□□□□ -1.27
SYNE3-203ENST00000554873 MUC17Q685J3 4493 aa7.1□□□□□ -1.27
SYNE3-203ENST00000554873 PRO2289Q9P1D8 64 aa7.1□□□□□ -1.27
SYNE3-203ENST00000554873 KRTAP4-5Q9BYR2 181 aa7.09□□□□□ -1.27
SYNE3-203ENST00000554873 KRTAP4-1Q9BYQ7 146 aa7.05□□□□□ -1.28
SYNE3-203ENST00000554873 HERC2O95714 4834 aa7.04□□□□□ -1.28
SYNE3-203ENST00000554873 KRTAP19-2Q3LHN2 52 aa6.94□□□□□ -1.3
SYNE3-203ENST00000554873 KRTAP23-1A1A580 65 aa6.92□□□□□ -1.3
SYNE3-203ENST00000554873 INE1O15225 51 aa6.86□□□□□ -1.31
SYNE3-203ENST00000554873 TNP1P09430 55 aa6.85□□□□□ -1.31
SYNE3-203ENST00000554873 J3QL48 77 aa6.82□□□□□ -1.32
SYNE3-203ENST00000554873 PCLOQ9Y6V0 5065 aa6.79□□□□□ -1.32
SYNE3-203ENST00000554873 MUC2Q02817 5179 aa6.78□□□□□ -1.32
SYNE3-203ENST00000554873 FLGP20930 4061 aaPredicted RBP6.76□□□□□ -1.33
SYNE3-203ENST00000554873 HERC1Q15751 4861 aa6.67□□□□□ -1.34
SYNE3-203ENST00000554873 LCE2CQ5TA81 110 aa6.46□□□□□ -1.38
SYNE3-203ENST00000554873 FAT4Q6V0I7 4981 aa6.43□□□□□ -1.38
SYNE3-203ENST00000554873 SPRR2GQ9BYE4 73 aa6.42□□□□□ -1.38
SYNE3-203ENST00000554873 RNF213Q63HN8 5207 aa6.41□□□□□ -1.38
SYNE3-203ENST00000554873 KRTAP19-1Q8IUB9 90 aa6.4□□□□□ -1.38
SYNE3-203ENST00000554873 HMCN2Q8NDA2 5059 aa6.4□□□□□ -1.39
SYNE3-203ENST00000554873 LCE3AQ5TA76 89 aa6.38□□□□□ -1.39
SYNE3-203ENST00000554873 UBR4Q5T4S7 5183 aa6.3□□□□□ -1.4
SYNE3-203ENST00000554873 M0R2T5 61 aa6.29□□□□□ -1.4
SYNE3-203ENST00000554873 MT1HP80294 61 aa6.25□□□□□ -1.41
SYNE3-203ENST00000554873 KRTAP8-1Q8IUC2 63 aa6.23□□□□□ -1.41
SYNE3-203ENST00000554873 MT1FP04733 61 aa6.21□□□□□ -1.41
SYNE3-203ENST00000554873 MT2AP02795 61 aa6.2□□□□□ -1.42
SYNE3-203ENST00000554873 KRTAP10-10P60014 251 aa6.2□□□□□ -1.42
SYNE3-203ENST00000554873 KRTAP9-8Q9BYQ0 159 aa6.15□□□□□ -1.42
SYNE3-203ENST00000554873 KRTAP10-12P60413 245 aa6.1□□□□□ -1.43
SYNE3-203ENST00000554873 KRTAP19-8Q3LI54 63 aa6.1□□□□□ -1.43
SYNE3-203ENST00000554873 KRTAP10-5P60370 271 aa6.05□□□□□ -1.44
SYNE3-203ENST00000554873 MT1BP07438 61 aa6.04□□□□□ -1.44
SYNE3-203ENST00000554873 KRTAP12-3P60328 96 aa6.04□□□□□ -1.44
SYNE3-203ENST00000554873 MT1XP80297 61 aa6.03□□□□□ -1.44
SYNE3-203ENST00000554873 KRTAP10-7P60409 375 aaPredicted RBP5.89□□□□□ -1.47
SYNE3-203ENST00000554873 KRTAP9-3Q9BYQ3 159 aa5.88□□□□□ -1.47
SYNE3-203ENST00000554873 LCE3CQ5T5A8 94 aa5.74□□□□□ -1.49
SYNE3-203ENST00000554873 FSIP2Q5CZC0 6907 aa5.7□□□□□ -1.5
SYNE3-203ENST00000554873 KRTAP19-5Q3LI72 72 aa5.67□□□□□ -1.5
SYNE3-203ENST00000554873 KRTAP2-3P0C7H8 128 aa5.66□□□□□ -1.5
SYNE3-203ENST00000554873 KRTAP2-4Q9BYR9 128 aa5.66□□□□□ -1.5
SYNE3-203ENST00000554873 KRTAP2-1Q9BYU5 128 aa5.66□□□□□ -1.5
SYNE3-203ENST00000554873 USH2AO75445 5202 aa5.66□□□□□ -1.5
SYNE3-203ENST00000554873 LCE2BO14633 110 aa5.63□□□□□ -1.51
SYNE3-203ENST00000554873 LCE2AQ5TA79 106 aaPredicted RBP5.62□□□□□ -1.51
SYNE3-203ENST00000554873 KMT2DO14686 5537 aa5.58□□□□□ -1.52
SYNE3-203ENST00000554873 KRTAP9-6A8MVA2 160 aa5.58□□□□□ -1.52
SYNE3-203ENST00000554873 KRTAP4-8A0A0G2JLE6 195 aa5.52□□□□□ -1.53
SYNE3-203ENST00000554873 KRTAP4-8Q9BYQ9 185 aa5.52□□□□□ -1.53
SYNE3-203ENST00000554873 KRTAP19-7Q3SYF9 63 aa5.38□□□□□ -1.55
SYNE3-203ENST00000554873 KRTAP9-2Q9BYQ4 174 aa5.37□□□□□ -1.55
SYNE3-203ENST00000554873 KRTAP4-7Q9BYR0 210 aa5.35□□□□□ -1.55
SYNE3-203ENST00000554873 LCE2DQ5TA82 110 aaPredicted RBP5.29□□□□□ -1.56
SYNE3-203ENST00000554873 MT1LQ93083 61 aa5.23□□□□□ -1.57
SYNE3-203ENST00000554873 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.57
SYNE3-203ENST00000554873 MT1EP04732 61 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms