RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 UBL5Q9BZL1 73 aa10.38□□□□□ -0.75
FOXA1-204ENST00000554607 A0A1W2PPM0 123 aa10.35□□□□□ -0.75
FOXA1-204ENST00000554607 PRO2289Q9P1D8 64 aa10.3□□□□□ -0.76
FOXA1-204ENST00000554607 COL5A1-AS1Q5SY13 56 aa10.28□□□□□ -0.76
FOXA1-204ENST00000554607 A0A087WVE0 104 aa10.26□□□□□ -0.77
FOXA1-204ENST00000554607 TAX1BP3O14907 124 aa10.26□□□□□ -0.77
FOXA1-204ENST00000554607 CYP4F30PQ9H0H9 118 aa10.26□□□□□ -0.77
FOXA1-204ENST00000554607 KRTAP2-2Q9BYT5 123 aa10.24□□□□□ -0.77
FOXA1-204ENST00000554607 KRTAP2-1Q9BYU5 128 aa10.24□□□□□ -0.77
FOXA1-204ENST00000554607 H0YAA0 97 aa10.22□□□□□ -0.77
FOXA1-204ENST00000554607 KRTAP8-1Q8IUC2 63 aa10.2□□□□□ -0.78
FOXA1-204ENST00000554607 A0A1B0GV90 55 aa10.17□□□□□ -0.78
FOXA1-204ENST00000554607 NDUFC1O43677 76 aa10.17□□□□□ -0.78
FOXA1-204ENST00000554607 SPCS1Q9Y6A9 102 aa10.17□□□□□ -0.78
FOXA1-204ENST00000554607 A8MUN3 132 aa10.15□□□□□ -0.78
FOXA1-204ENST00000554607 MT1XP80297 61 aa10.15□□□□□ -0.78
FOXA1-204ENST00000554607 LCE1AQ5T7P2 110 aa10.15□□□□□ -0.78
FOXA1-204ENST00000554607 LOC101927531A0A1B0GV80 90 aa10.12□□□□□ -0.79
FOXA1-204ENST00000554607 PLAC4Q8WY50 150 aa10.11□□□□□ -0.79
FOXA1-204ENST00000554607 TRAV22A0A0B4J277 110 aa10.08□□□□□ -0.8
FOXA1-204ENST00000554607 ADM2Q7Z4H4 148 aa10.08□□□□□ -0.8
FOXA1-204ENST00000554607 KRTAP12-2P59991 146 aa10.06□□□□□ -0.8
FOXA1-204ENST00000554607 SPRR2DP22532 72 aa10.05□□□□□ -0.8
FOXA1-204ENST00000554607 K7EP34 96 aa10.02□□□□□ -0.81
FOXA1-204ENST00000554607 PRO0461Q9UI25 63 aa10.01□□□□□ -0.81
FOXA1-204ENST00000554607 ACYP1P07311 99 aa9.96□□□□□ -0.82
FOXA1-204ENST00000554607 GTF2H5Q6ZYL4 71 aa9.94□□□□□ -0.82
FOXA1-204ENST00000554607 R4GN34 69 aa9.9□□□□□ -0.82
FOXA1-204ENST00000554607 KRTAP4-8A0A0G2JLE6 195 aa9.88□□□□□ -0.83
FOXA1-204ENST00000554607 ATOX1O00244 68 aa9.88□□□□□ -0.83
FOXA1-204ENST00000554607 KRTAP4-8Q9BYQ9 185 aa9.88□□□□□ -0.83
FOXA1-204ENST00000554607 UQCRQO14949 82 aa9.85□□□□□ -0.83
FOXA1-204ENST00000554607 H0Y9P7 68 aa9.84□□□□□ -0.83
FOXA1-204ENST00000554607 LCE3BQ5TA77 95 aa9.81□□□□□ -0.84
FOXA1-204ENST00000554607 C20orf197Q8N268 126 aa9.81□□□□□ -0.84
FOXA1-204ENST00000554607 F8W1H4 67 aa9.76□□□□□ -0.85
FOXA1-204ENST00000554607 M0QZ58 72 aa9.76□□□□□ -0.85
FOXA1-204ENST00000554607 P0C880 135 aa9.74□□□□□ -0.85
FOXA1-204ENST00000554607 LOC100996750A0A140TA64 210 aa9.72□□□□□ -0.85
FOXA1-204ENST00000554607 ETDBQ3ZM63 59 aa9.72□□□□□ -0.85
FOXA1-204ENST00000554607 KRTAP4-6Q9BYQ5 205 aa9.72□□□□□ -0.85
FOXA1-204ENST00000554607 KRTAP10-7P60409 375 aaPredicted RBP9.67□□□□□ -0.86
FOXA1-204ENST00000554607 HIST1H4AP62805 103 aaKnown RBP9.67□□□□□ -0.86
FOXA1-204ENST00000554607 KRTAP10-12P60413 245 aa9.66□□□□□ -0.86
FOXA1-204ENST00000554607 LINC01554Q52M75 96 aa9.65□□□□□ -0.86
FOXA1-204ENST00000554607 ATP5EP2Q5VTU8 51 aa9.64□□□□□ -0.87
FOXA1-204ENST00000554607 LINC00208Q96KT6 92 aa9.63□□□□□ -0.87
FOXA1-204ENST00000554607 GPR98Q8WXG9 6306 aa9.61□□□□□ -0.87
FOXA1-204ENST00000554607 K7ERU9 68 aa9.59□□□□□ -0.87
FOXA1-204ENST00000554607 J3QR89 54 aa9.54□□□□□ -0.88
FOXA1-204ENST00000554607 MP68P56378 58 aa9.53□□□□□ -0.88
FOXA1-204ENST00000554607 FAM240AA0A1B0GVK7 77 aa9.48□□□□□ -0.89
FOXA1-204ENST00000554607 DSTQ03001 7570 aaKnown RBP9.44□□□□□ -0.9
FOXA1-204ENST00000554607 DMAC1Q96GE9 116 aa9.41□□□□□ -0.9
FOXA1-204ENST00000554607 OCR1Q9BZK8 76 aa9.39□□□□□ -0.91
FOXA1-204ENST00000554607 MT-ATP8P03928 68 aa9.38□□□□□ -0.91
FOXA1-204ENST00000554607 H3BPC8 53 aa9.32□□□□□ -0.92
FOXA1-204ENST00000554607 LINC00643Q86TS7 51 aa9.32□□□□□ -0.92
FOXA1-204ENST00000554607 KRTAP4-9Q9BYQ8 210 aa9.25□□□□□ -0.93
FOXA1-204ENST00000554607 TRAV7A0A075B6U4 112 aa9.23□□□□□ -0.93
FOXA1-204ENST00000554607 LCE5AQ5TCM9 118 aa9.2□□□□□ -0.94
FOXA1-204ENST00000554607 SPTSSBQ8NFR3 76 aa9.15□□□□□ -0.94
FOXA1-204ENST00000554607 SCGB1A1P11684 91 aa9.12□□□□□ -0.95
FOXA1-204ENST00000554607 ACYP2P14621 99 aa9.12□□□□□ -0.95
FOXA1-204ENST00000554607 KRTAP19-3Q7Z4W3 81 aa9.1□□□□□ -0.95
FOXA1-204ENST00000554607 KRTAP19-7Q3SYF9 63 aa9.08□□□□□ -0.96
FOXA1-204ENST00000554607 MT1EP04732 61 aa9.04□□□□□ -0.96
FOXA1-204ENST00000554607 CAMK2N1Q7Z7J9 78 aa9.02□□□□□ -0.97
FOXA1-204ENST00000554607 LCE1DQ5T752 114 aa8.98□□□□□ -0.97
FOXA1-204ENST00000554607 PCP4P48539 62 aa8.96□□□□□ -0.98
FOXA1-204ENST00000554607 CHKB-CPT1BH3BT56 60 aa8.94□□□□□ -0.98
FOXA1-204ENST00000554607 CYSTM1Q9H1C7 97 aa8.94□□□□□ -0.98
FOXA1-204ENST00000554607 HMCN1Q96RW7 5635 aa8.87□□□□□ -0.99
FOXA1-204ENST00000554607 LCE4AQ5TA78 99 aa8.87□□□□□ -0.99
FOXA1-204ENST00000554607 MT1GP13640 62 aa8.85□□□□□ -0.99
FOXA1-204ENST00000554607 KRTAP13-4Q3LI77 160 aa8.85□□□□□ -0.99
FOXA1-204ENST00000554607 MT4P47944 62 aa8.81□□□□□ -1
FOXA1-204ENST00000554607 PP632Q6XCG6 107 aa8.81□□□□□ -1
FOXA1-204ENST00000554607 ANAPC13Q9BS18 74 aa8.81□□□□□ -1
FOXA1-204ENST00000554607 AHNAK2Q8IVF2 5795 aa8.75□□□□□ -1.01
FOXA1-204ENST00000554607 A0A0D9SG42 100 aa8.73□□□□□ -1.01
FOXA1-204ENST00000554607 KRTAP19-5Q3LI72 72 aa8.72□□□□□ -1.01
FOXA1-204ENST00000554607 SMIM20Q8N5G0 67 aa8.69□□□□□ -1.02
FOXA1-204ENST00000554607 KRTAP4-12Q9BQ66 201 aa8.68□□□□□ -1.02
FOXA1-204ENST00000554607 SERP2Q8N6R1 65 aa8.66□□□□□ -1.02
FOXA1-204ENST00000554607 MT1MQ8N339 61 aa8.65□□□□□ -1.02
FOXA1-204ENST00000554607 COX7CP15954 63 aa8.64□□□□□ -1.03
FOXA1-204ENST00000554607 KRTAP5-10Q6L8G5 202 aa8.61□□□□□ -1.03
FOXA1-204ENST00000554607 CCDC179H3BU77 68 aa8.58□□□□□ -1.04
FOXA1-204ENST00000554607 KRTAP5-4Q6L8H1 288 aa8.57□□□□□ -1.04
FOXA1-204ENST00000554607 MT1LQ93083 61 aa8.54□□□□□ -1.04
FOXA1-204ENST00000554607 SPANXA2-OT1Q8N9U9 137 aa8.52□□□□□ -1.05
FOXA1-204ENST00000554607 SPINT4Q6UDR6 99 aa8.5□□□□□ -1.05
FOXA1-204ENST00000554607 SNURFQ9Y675 71 aa8.5□□□□□ -1.05
FOXA1-204ENST00000554607 SEC61GP60059 68 aa8.45□□□□□ -1.06
FOXA1-204ENST00000554607 SERP1Q9Y6X1 66 aa8.44□□□□□ -1.06
FOXA1-204ENST00000554607 KRTAP4-3Q9BYR4 195 aa8.42□□□□□ -1.06
FOXA1-204ENST00000554607 SPATA8Q6RVD6 105 aa8.41□□□□□ -1.06
FOXA1-204ENST00000554607 KRTAP9-9Q9BYP9 154 aa8.39□□□□□ -1.07
FOXA1-204ENST00000554607 KRTAP9-4Q9BYQ2 154 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms