RNA–Protein interactions for RNA: ENST00000554584.5

SYNE2-212, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5 BASIC

Gene SYNE2, Length 20,508 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-212ENST00000554584 SPRR5A0A1B0GTR4 108 aa1.51□□□□□ -2.17
SYNE2-212ENST00000554584 HERC1Q15751 4861 aa1.5□□□□□ -2.17
SYNE2-212ENST00000554584 FRAS1Q86XX4 4008 aa1.5□□□□□ -2.17
SYNE2-212ENST00000554584 KRTAP10-12P60413 245 aa1.5□□□□□ -2.17
SYNE2-212ENST00000554584 MUC3AQ02505 3323 aa1.49□□□□□ -2.17
SYNE2-212ENST00000554584 CMYA5Q8N3K9 4069 aa1.49□□□□□ -2.17
SYNE2-212ENST00000554584 KRTAP3-1Q9BYR8 98 aa1.48□□□□□ -2.17
SYNE2-212ENST00000554584 PCLOQ9Y6V0 5065 aa1.48□□□□□ -2.17
SYNE2-212ENST00000554584 LCE3AQ5TA76 89 aa1.48□□□□□ -2.17
SYNE2-212ENST00000554584 ANK3Q12955 4377 aaKnown RBP1.48□□□□□ -2.17
SYNE2-212ENST00000554584 MYCBP2O75592 4640 aa1.47□□□□□ -2.17
SYNE2-212ENST00000554584 DNAH1Q9P2D7 4330 aa1.46□□□□□ -2.18
SYNE2-212ENST00000554584 SPRR2FQ96RM1 72 aa1.46□□□□□ -2.18
SYNE2-212ENST00000554584 BIRC6Q9NR09 4857 aa1.46□□□□□ -2.18
SYNE2-212ENST00000554584 EPPK1P58107 5090 aaKnown RBP1.45□□□□□ -2.18
SYNE2-212ENST00000554584 ANK2Q01484 3957 aa1.45□□□□□ -2.18
SYNE2-212ENST00000554584 KRTAP10-4P60372 401 aaPredicted RBP1.45□□□□□ -2.18
SYNE2-212ENST00000554584 DNAH7Q8WXX0 4024 aa1.45□□□□□ -2.18
SYNE2-212ENST00000554584 KRTAP12-3P60328 96 aa1.44□□□□□ -2.18
SYNE2-212ENST00000554584 KRTAP4-1Q9BYQ7 146 aa1.44□□□□□ -2.18
SYNE2-212ENST00000554584 ZNF469Q96JG9 3925 aaPredicted RBP1.44□□□□□ -2.18
SYNE2-212ENST00000554584 PLECQ15149 4684 aaKnown RBP1.43□□□□□ -2.18
SYNE2-212ENST00000554584 HECTD4Q9Y4D8 3996 aa1.43□□□□□ -2.18
SYNE2-212ENST00000554584 RYR3Q15413 4870 aa1.43□□□□□ -2.18
SYNE2-212ENST00000554584 DNAH2Q9P225 4427 aa1.43□□□□□ -2.18
SYNE2-212ENST00000554584 ABCA13Q86UQ4 5058 aa1.42□□□□□ -2.18
SYNE2-212ENST00000554584 MT1HL1P0DM35 61 aa1.42□□□□□ -2.18
SYNE2-212ENST00000554584 HUWE1Q7Z6Z7 4374 aaKnown RBP1.42□□□□□ -2.18
SYNE2-212ENST00000554584 SPRR2EP22531 72 aa1.41□□□□□ -2.18
SYNE2-212ENST00000554584 SPRR2BP35325 72 aa1.41□□□□□ -2.18
SYNE2-212ENST00000554584 SPRR2AP35326 72 aa1.41□□□□□ -2.18
SYNE2-212ENST00000554584 KRTAP3-3Q9BYR6 98 aa1.41□□□□□ -2.18
SYNE2-212ENST00000554584 KRTAP3-2Q9BYR7 98 aa1.41□□□□□ -2.18
SYNE2-212ENST00000554584 DNAH3Q8TD57 4116 aa1.41□□□□□ -2.18
SYNE2-212ENST00000554584 DNAH10Q8IVF4 4471 aa1.4□□□□□ -2.18
SYNE2-212ENST00000554584 KMT2AQ03164 3969 aa1.4□□□□□ -2.19
SYNE2-212ENST00000554584 DNAH17Q9UFH2 4485 aa1.39□□□□□ -2.19
SYNE2-212ENST00000554584 KRTAP17-1Q9BYP8 105 aa1.39□□□□□ -2.19
SYNE2-212ENST00000554584 VPS13BQ7Z7G8 4022 aa1.39□□□□□ -2.19
SYNE2-212ENST00000554584 LCE3BQ5TA77 95 aa1.39□□□□□ -2.19
SYNE2-212ENST00000554584 DNAH8Q96JB1 4490 aa1.38□□□□□ -2.19
SYNE2-212ENST00000554584 RYR2Q92736 4967 aa1.37□□□□□ -2.19
SYNE2-212ENST00000554584 SPRR2DP22532 72 aa1.37□□□□□ -2.19
SYNE2-212ENST00000554584 DNAH6Q9C0G6 4158 aa1.37□□□□□ -2.19
SYNE2-212ENST00000554584 KMT2CQ8NEZ4 4911 aaKnown RBP1.37□□□□□ -2.19
SYNE2-212ENST00000554584 VPS13DQ5THJ4 4388 aa1.34□□□□□ -2.19
SYNE2-212ENST00000554584 KRTAP19-5Q3LI72 72 aa1.34□□□□□ -2.19
SYNE2-212ENST00000554584 MT4P47944 62 aa1.34□□□□□ -2.19
SYNE2-212ENST00000554584 SYNE1Q8NF91 8797 aaKnown RBP1.33□□□□□ -2.2
SYNE2-212ENST00000554584 DNAH11Q96DT5 4516 aa1.33□□□□□ -2.2
SYNE2-212ENST00000554584 GPR98Q8WXG9 6306 aa1.33□□□□□ -2.2
SYNE2-212ENST00000554584 SYNE2Q8WXH0 6885 aaKnown RBP1.33□□□□□ -2.2
SYNE2-212ENST00000554584 HERC2O95714 4834 aa1.33□□□□□ -2.2
SYNE2-212ENST00000554584 LCE1BQ5T7P3 118 aa1.33□□□□□ -2.2
SYNE2-212ENST00000554584 RNF213Q63HN8 5207 aa1.32□□□□□ -2.2
SYNE2-212ENST00000554584 DYNC1H1Q14204 4646 aaKnown RBP1.32□□□□□ -2.2
SYNE2-212ENST00000554584 MT1GP13640 62 aa1.32□□□□□ -2.2
SYNE2-212ENST00000554584 OBSCNQ5VST9 7968 aa1.31□□□□□ -2.2
SYNE2-212ENST00000554584 LRP2P98164 4655 aa1.31□□□□□ -2.2
SYNE2-212ENST00000554584 DYNC2H1Q8NCM8 4307 aaKnown RBP1.31□□□□□ -2.2
SYNE2-212ENST00000554584 MT2AP02795 61 aa1.31□□□□□ -2.2
SYNE2-212ENST00000554584 MT1FP04733 61 aa1.3□□□□□ -2.2
SYNE2-212ENST00000554584 HYDINQ4G0P3 5121 aa1.3□□□□□ -2.2
SYNE2-212ENST00000554584 PRKDCP78527 4128 aaKnown RBP1.3□□□□□ -2.2
SYNE2-212ENST00000554584 KRTAP4-8A0A0G2JLE6 195 aa1.3□□□□□ -2.2
SYNE2-212ENST00000554584 KRTAP4-8Q9BYQ9 185 aa1.3□□□□□ -2.2
SYNE2-212ENST00000554584 LRP1Q07954 4544 aaKnown RBP1.29□□□□□ -2.2
SYNE2-212ENST00000554584 KRTAP4-7Q9BYR0 210 aa1.29□□□□□ -2.2
SYNE2-212ENST00000554584 MT1HP80294 61 aa1.29□□□□□ -2.2
SYNE2-212ENST00000554584 KIAA1109Q2LD37 5005 aa1.29□□□□□ -2.2
SYNE2-212ENST00000554584 FAT3Q8TDW7 4589 aa1.29□□□□□ -2.2
SYNE2-212ENST00000554584 DNAH9Q9NYC9 4486 aa1.28□□□□□ -2.2
SYNE2-212ENST00000554584 LCE2DQ5TA82 110 aaPredicted RBP1.28□□□□□ -2.2
SYNE2-212ENST00000554584 KRTAP4-3Q9BYR4 195 aa1.27□□□□□ -2.21
SYNE2-212ENST00000554584 MUC12Q9UKN1 5478 aa1.27□□□□□ -2.21
SYNE2-212ENST00000554584 SACSQ9NZJ4 4579 aa1.27□□□□□ -2.21
SYNE2-212ENST00000554584 HMCN2Q8NDA2 5059 aa1.27□□□□□ -2.21
SYNE2-212ENST00000554584 LRP1BQ9NZR2 4599 aa1.27□□□□□ -2.21
SYNE2-212ENST00000554584 USH2AO75445 5202 aa1.27□□□□□ -2.21
SYNE2-212ENST00000554584 LCE1DQ5T752 114 aa1.26□□□□□ -2.21
SYNE2-212ENST00000554584 PKHD1P08F94 4074 aa1.26□□□□□ -2.21
SYNE2-212ENST00000554584 DNAH5Q8TE73 4624 aa1.26□□□□□ -2.21
SYNE2-212ENST00000554584 FLGP20930 4061 aaPredicted RBP1.26□□□□□ -2.21
SYNE2-212ENST00000554584 PKHD1L1Q86WI1 4243 aa1.25□□□□□ -2.21
SYNE2-212ENST00000554584 FAT1Q14517 4588 aa1.25□□□□□ -2.21
SYNE2-212ENST00000554584 FAT2Q9NYQ8 4349 aa1.25□□□□□ -2.21
SYNE2-212ENST00000554584 FSIP2Q5CZC0 6907 aa1.25□□□□□ -2.21
SYNE2-212ENST00000554584 LCE2CQ5TA81 110 aa1.24□□□□□ -2.21
SYNE2-212ENST00000554584 KRTAP19-1Q8IUB9 90 aa1.24□□□□□ -2.21
SYNE2-212ENST00000554584 UBR4Q5T4S7 5183 aa1.24□□□□□ -2.21
SYNE2-212ENST00000554584 LOC100996750A0A140TA64 210 aa1.24□□□□□ -2.21
SYNE2-212ENST00000554584 PKD1P98161 4303 aa1.23□□□□□ -2.21
SYNE2-212ENST00000554584 LCE4AQ5TA78 99 aa1.23□□□□□ -2.21
SYNE2-212ENST00000554584 LCE1CQ5T751 118 aa1.23□□□□□ -2.21
SYNE2-212ENST00000554584 LCE1EQ5T753 118 aa1.23□□□□□ -2.21
SYNE2-212ENST00000554584 LCE1FQ5T754 118 aa1.23□□□□□ -2.21
SYNE2-212ENST00000554584 LCE1AQ5T7P2 110 aa1.23□□□□□ -2.21
SYNE2-212ENST00000554584 LCE3CQ5T5A8 94 aa1.22□□□□□ -2.21
SYNE2-212ENST00000554584 KRTAP4-9Q9BYQ8 210 aa1.22□□□□□ -2.21
SYNE2-212ENST00000554584 LCE3EQ5T5B0 92 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms