RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 USH2AO75445 5202 aa3.92□□□□□ -1.78
DEPDC4-208ENST00000549341 TMEM258P61165 79 aa3.91□□□□□ -1.78
DEPDC4-208ENST00000549341 SSPOA2VEC9 5147 aa3.91□□□□□ -1.78
DEPDC4-208ENST00000549341 ATP5EP56381 51 aaPredicted RBP3.9□□□□□ -1.79
DEPDC4-208ENST00000549341 NOTCH2NLQ7Z3S9 236 aa3.9□□□□□ -1.79
DEPDC4-208ENST00000549341 LINC00208Q96KT6 92 aa3.9□□□□□ -1.79
DEPDC4-208ENST00000549341 SNURFQ9Y675 71 aa3.9□□□□□ -1.79
DEPDC4-208ENST00000549341 LOC101927531A0A1B0GV80 90 aa3.89□□□□□ -1.79
DEPDC4-208ENST00000549341 C1orf64Q8NEQ6 169 aa3.89□□□□□ -1.79
DEPDC4-208ENST00000549341 KRTAP2-2Q9BYT5 123 aa3.89□□□□□ -1.79
DEPDC4-208ENST00000549341 SYNE2Q8WXH0 6885 aaKnown RBP3.89□□□□□ -1.79
DEPDC4-208ENST00000549341 KRTAP16-1A8MUX0 517 aa3.87□□□□□ -1.79
DEPDC4-208ENST00000549341 SEC61BP60468 96 aaKnown RBP3.87□□□□□ -1.79
DEPDC4-208ENST00000549341 MT1HP80294 61 aa3.87□□□□□ -1.79
DEPDC4-208ENST00000549341 FAM236DA0A1B0GTK5 79 aa3.86□□□□□ -1.79
DEPDC4-208ENST00000549341 C9orf92A6NGG3 77 aa3.86□□□□□ -1.79
DEPDC4-208ENST00000549341 FAM236CP0DP71 79 aa3.86□□□□□ -1.79
DEPDC4-208ENST00000549341 H7BZZ5 65 aa3.85□□□□□ -1.79
DEPDC4-208ENST00000549341 KRTAP13-3Q3SY46 172 aa3.85□□□□□ -1.79
DEPDC4-208ENST00000549341 ZCCHC13Q8WW36 166 aaKnown RBP3.85□□□□□ -1.79
DEPDC4-208ENST00000549341 C20orf166-AS1Q96NR2 134 aa3.85□□□□□ -1.79
DEPDC4-208ENST00000549341 A8MUU9 505 aa3.84□□□□□ -1.79
DEPDC4-208ENST00000549341 M0R2T5 61 aa3.84□□□□□ -1.79
DEPDC4-208ENST00000549341 Q75L30 129 aa3.84□□□□□ -1.79
DEPDC4-208ENST00000549341 SPANXA2-OT1Q8N9U9 137 aa3.83□□□□□ -1.8
DEPDC4-208ENST00000549341 IGKV2-30P06310 120 aa3.82□□□□□ -1.8
DEPDC4-208ENST00000549341 Q5W150 140 aa3.82□□□□□ -1.8
DEPDC4-208ENST00000549341 ATP11AUNQ6ZP68 121 aa3.82□□□□□ -1.8
DEPDC4-208ENST00000549341 FCGBPQ9Y6R7 5405 aaPredicted RBP3.82□□□□□ -1.8
DEPDC4-208ENST00000549341 KRTAP19-2Q3LHN2 52 aa3.81□□□□□ -1.8
DEPDC4-208ENST00000549341 C7orf65Q6ZTY9 151 aa3.81□□□□□ -1.8
DEPDC4-208ENST00000549341 PCOTHQ58A44 107 aa3.8□□□□□ -1.8
DEPDC4-208ENST00000549341 CYP4F30PQ9H0H9 118 aa3.8□□□□□ -1.8
DEPDC4-208ENST00000549341 CYSTM1Q9H1C7 97 aa3.8□□□□□ -1.8
DEPDC4-208ENST00000549341 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
DEPDC4-208ENST00000549341 IGKV2D-30A0A075B6S6 120 aa3.79□□□□□ -1.8
DEPDC4-208ENST00000549341 RPL37P61927 97 aaKnown RBP3.79□□□□□ -1.8
DEPDC4-208ENST00000549341 SERP1Q9Y6X1 66 aa3.79□□□□□ -1.8
DEPDC4-208ENST00000549341 RPS28P62857 69 aaKnown RBP3.78□□□□□ -1.8
DEPDC4-208ENST00000549341 COX6B2Q6YFQ2 88 aa3.76□□□□□ -1.81
DEPDC4-208ENST00000549341 HRES1P13985 223 aa3.74□□□□□ -1.81
DEPDC4-208ENST00000549341 ACYP2P14621 99 aa3.74□□□□□ -1.81
DEPDC4-208ENST00000549341 A8MUN3 132 aa3.73□□□□□ -1.81
DEPDC4-208ENST00000549341 SPINK7P58062 85 aa3.73□□□□□ -1.81
DEPDC4-208ENST00000549341 FLGP20930 4061 aaPredicted RBP3.73□□□□□ -1.81
DEPDC4-208ENST00000549341 CHKB-CPT1BH3BT56 60 aa3.71□□□□□ -1.82
DEPDC4-208ENST00000549341 SMIM26A0A096LP01 95 aa3.7□□□□□ -1.82
DEPDC4-208ENST00000549341 DMAC1Q96GE9 116 aa3.7□□□□□ -1.82
DEPDC4-208ENST00000549341 NEBP20929 6669 aa3.7□□□□□ -1.82
DEPDC4-208ENST00000549341 KRTAP5-1Q6L8H4 278 aa3.69□□□□□ -1.82
DEPDC4-208ENST00000549341 COA5Q86WW8 74 aa3.69□□□□□ -1.82
DEPDC4-208ENST00000549341 SPTSSBQ8NFR3 76 aa3.67□□□□□ -1.82
DEPDC4-208ENST00000549341 V9GYY9 64 aa3.67□□□□□ -1.82
DEPDC4-208ENST00000549341 C4orf26Q17RF5 130 aa3.66□□□□□ -1.82
DEPDC4-208ENST00000549341 RBM12B-AS1Q9P1G2 102 aa3.66□□□□□ -1.82
DEPDC4-208ENST00000549341 KRTAP5-4Q6L8H1 288 aa3.6□□□□□ -1.83
DEPDC4-208ENST00000549341 KRTAP5-9P26371 169 aa3.59□□□□□ -1.83
DEPDC4-208ENST00000549341 Q1T7F1 81 aa3.59□□□□□ -1.83
DEPDC4-208ENST00000549341 MPLKIPQ8TAP9 179 aa3.59□□□□□ -1.83
DEPDC4-208ENST00000549341 PRR15LQ9BU68 103 aa3.59□□□□□ -1.83
DEPDC4-208ENST00000549341 SEC61GP60059 68 aa3.58□□□□□ -1.84
DEPDC4-208ENST00000549341 H1FX-AS1Q4G0G2 97 aa3.58□□□□□ -1.84
DEPDC4-208ENST00000549341 LINC01558Q9Y6Z2 57 aa3.56□□□□□ -1.84
DEPDC4-208ENST00000549341 S4R3F8 94 aa3.56□□□□□ -1.84
DEPDC4-208ENST00000549341 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
DEPDC4-208ENST00000549341 MUC12Q9UKN1 5478 aa3.54□□□□□ -1.84
DEPDC4-208ENST00000549341 A0A1B0GU69 56 aa3.53□□□□□ -1.84
DEPDC4-208ENST00000549341 MT2AP02795 61 aa3.53□□□□□ -1.84
DEPDC4-208ENST00000549341 KRTAP6-3Q3LI67 103 aa3.52□□□□□ -1.85
DEPDC4-208ENST00000549341 MT1FP04733 61 aa3.51□□□□□ -1.85
DEPDC4-208ENST00000549341 PSPHP1O15172 72 aa3.5□□□□□ -1.85
DEPDC4-208ENST00000549341 MT3P25713 68 aa3.5□□□□□ -1.85
DEPDC4-208ENST00000549341 CSAG1Q6PB30 78 aa3.5□□□□□ -1.85
DEPDC4-208ENST00000549341 KRTAP10-10P60014 251 aa3.49□□□□□ -1.85
DEPDC4-208ENST00000549341 LCA10Q71F78 164 aa3.48□□□□□ -1.85
DEPDC4-208ENST00000549341 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
DEPDC4-208ENST00000549341 KRTAP19-6Q3LI70 58 aa3.46□□□□□ -1.86
DEPDC4-208ENST00000549341 Q5VV11 94 aa3.46□□□□□ -1.86
DEPDC4-208ENST00000549341 A6NED7 52 aa3.45□□□□□ -1.86
DEPDC4-208ENST00000549341 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
DEPDC4-208ENST00000549341 UQCR11O14957 56 aa3.44□□□□□ -1.86
DEPDC4-208ENST00000549341 BRK1Q8WUW1 75 aa3.41□□□□□ -1.86
DEPDC4-208ENST00000549341 A0A1B0GU33 70 aa3.4□□□□□ -1.87
DEPDC4-208ENST00000549341 H0YAA0 97 aa3.4□□□□□ -1.87
DEPDC4-208ENST00000549341 KMT2DO14686 5537 aa3.39□□□□□ -1.87
DEPDC4-208ENST00000549341 KRTAP10-5P60370 271 aa3.39□□□□□ -1.87
DEPDC4-208ENST00000549341 MIR22HGQ0VDD5 57 aa3.38□□□□□ -1.87
DEPDC4-208ENST00000549341 ADM2Q7Z4H4 148 aa3.38□□□□□ -1.87
DEPDC4-208ENST00000549341 CDC42SE1Q9NRR8 79 aa3.38□□□□□ -1.87
DEPDC4-208ENST00000549341 GPR98Q8WXG9 6306 aa3.36□□□□□ -1.87
DEPDC4-208ENST00000549341 SPATA8Q6RVD6 105 aa3.35□□□□□ -1.87
DEPDC4-208ENST00000549341 PRO0628Q9UI54 55 aa3.35□□□□□ -1.87
DEPDC4-208ENST00000549341 KRTAP9-6A8MVA2 160 aa3.34□□□□□ -1.87
DEPDC4-208ENST00000549341 K7ERS5 55 aa3.33□□□□□ -1.88
DEPDC4-208ENST00000549341 M0QZ58 72 aa3.33□□□□□ -1.88
DEPDC4-208ENST00000549341 P0C880 135 aa3.3□□□□□ -1.88
DEPDC4-208ENST00000549341 R4GN34 69 aa3.3□□□□□ -1.88
DEPDC4-208ENST00000549341 CRIPTQ9P021 101 aa3.29□□□□□ -1.88
DEPDC4-208ENST00000549341 SVIPQ8NHG7 77 aa3.27□□□□□ -1.89
DEPDC4-208ENST00000549341 A6NN06 94 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms