RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 PRO2289Q9P1D8 64 aa4.55□□□□□ -1.68
CLIP1-218ENST00000545889 FAT1Q14517 4588 aa4.54□□□□□ -1.68
CLIP1-218ENST00000545889 DYNC1H1Q14204 4646 aaKnown RBP4.54□□□□□ -1.68
CLIP1-218ENST00000545889 DYNC2H1Q8NCM8 4307 aaKnown RBP4.53□□□□□ -1.68
CLIP1-218ENST00000545889 DNAH17Q9UFH2 4485 aa4.53□□□□□ -1.68
CLIP1-218ENST00000545889 HYDINQ4G0P3 5121 aa4.53□□□□□ -1.69
CLIP1-218ENST00000545889 LRP1BQ9NZR2 4599 aa4.52□□□□□ -1.69
CLIP1-218ENST00000545889 KRTAP10-4P60372 401 aaPredicted RBP4.51□□□□□ -1.69
CLIP1-218ENST00000545889 SACSQ9NZJ4 4579 aa4.51□□□□□ -1.69
CLIP1-218ENST00000545889 DNAH2Q9P225 4427 aa4.51□□□□□ -1.69
CLIP1-218ENST00000545889 KIAA1109Q2LD37 5005 aa4.5□□□□□ -1.69
CLIP1-218ENST00000545889 KRTAP13-3Q3SY46 172 aa4.5□□□□□ -1.69
CLIP1-218ENST00000545889 KMT2CQ8NEZ4 4911 aaKnown RBP4.49□□□□□ -1.69
CLIP1-218ENST00000545889 RYR2Q92736 4967 aa4.45□□□□□ -1.7
CLIP1-218ENST00000545889 RYR3Q15413 4870 aa4.45□□□□□ -1.7
CLIP1-218ENST00000545889 MT1HL1P0DM35 61 aa4.44□□□□□ -1.7
CLIP1-218ENST00000545889 DNAH6Q9C0G6 4158 aa4.43□□□□□ -1.7
CLIP1-218ENST00000545889 RYR1P21817 5038 aa4.41□□□□□ -1.7
CLIP1-218ENST00000545889 KRTAP15-1Q3LI76 137 aa4.4□□□□□ -1.71
CLIP1-218ENST00000545889 PKHD1P08F94 4074 aa4.39□□□□□ -1.71
CLIP1-218ENST00000545889 FAT2Q9NYQ8 4349 aa4.38□□□□□ -1.71
CLIP1-218ENST00000545889 DNAH8Q96JB1 4490 aa4.38□□□□□ -1.71
CLIP1-218ENST00000545889 KRTAP17-1Q9BYP8 105 aa4.36□□□□□ -1.71
CLIP1-218ENST00000545889 HECTD4Q9Y4D8 3996 aa4.36□□□□□ -1.71
CLIP1-218ENST00000545889 APOBP04114 4563 aaKnown RBP4.36□□□□□ -1.71
CLIP1-218ENST00000545889 VPS13BQ7Z7G8 4022 aa4.34□□□□□ -1.71
CLIP1-218ENST00000545889 PP632Q6XCG6 107 aa4.33□□□□□ -1.72
CLIP1-218ENST00000545889 FRAS1Q86XX4 4008 aa4.31□□□□□ -1.72
CLIP1-218ENST00000545889 LRP1Q07954 4544 aaKnown RBP4.3□□□□□ -1.72
CLIP1-218ENST00000545889 EPPK1P58107 5090 aaKnown RBP4.26□□□□□ -1.73
CLIP1-218ENST00000545889 PKD1P98161 4303 aa4.26□□□□□ -1.73
CLIP1-218ENST00000545889 MYCBP2O75592 4640 aa4.25□□□□□ -1.73
CLIP1-218ENST00000545889 HERC2O95714 4834 aa4.21□□□□□ -1.73
CLIP1-218ENST00000545889 FAT3Q8TDW7 4589 aa4.21□□□□□ -1.74
CLIP1-218ENST00000545889 HSPG2P98160 4391 aa4.21□□□□□ -1.74
CLIP1-218ENST00000545889 KRTAP12-2P59991 146 aa4.2□□□□□ -1.74
CLIP1-218ENST00000545889 KRTAP13-4Q3LI77 160 aa4.2□□□□□ -1.74
CLIP1-218ENST00000545889 BIRC6Q9NR09 4857 aa4.19□□□□□ -1.74
CLIP1-218ENST00000545889 KRTAP3-1Q9BYR8 98 aa4.18□□□□□ -1.74
CLIP1-218ENST00000545889 KRTAP10-6P60371 365 aaPredicted RBP4.1□□□□□ -1.75
CLIP1-218ENST00000545889 KRTAP12-1P59990 96 aa4.09□□□□□ -1.76
CLIP1-218ENST00000545889 ABCA13Q86UQ4 5058 aa4.08□□□□□ -1.76
CLIP1-218ENST00000545889 LRP2P98164 4655 aa4.04□□□□□ -1.76
CLIP1-218ENST00000545889 KRTAP4-1Q9BYQ7 146 aa4.02□□□□□ -1.77
CLIP1-218ENST00000545889 KRTAP3-2Q9BYR7 98 aa3.97□□□□□ -1.77
CLIP1-218ENST00000545889 LPAP08519 4548 aa3.95□□□□□ -1.78
CLIP1-218ENST00000545889 PKHD1L1Q86WI1 4243 aa3.94□□□□□ -1.78
CLIP1-218ENST00000545889 KRTAP3-3Q9BYR6 98 aa3.92□□□□□ -1.78
CLIP1-218ENST00000545889 TNXBP22105 4242 aa3.91□□□□□ -1.78
CLIP1-218ENST00000545889 PCLOQ9Y6V0 5065 aa3.91□□□□□ -1.78
CLIP1-218ENST00000545889 HERC1Q15751 4861 aa3.91□□□□□ -1.78
CLIP1-218ENST00000545889 CRCT1Q9UGL9 99 aa3.9□□□□□ -1.79
CLIP1-218ENST00000545889 KRTAP10-12P60413 245 aa3.83□□□□□ -1.8
CLIP1-218ENST00000545889 LORP23490 312 aaPredicted RBP3.82□□□□□ -1.8
CLIP1-218ENST00000545889 MT1HP80294 61 aa3.77□□□□□ -1.81
CLIP1-218ENST00000545889 RNF213Q63HN8 5207 aa3.76□□□□□ -1.81
CLIP1-218ENST00000545889 UBR4Q5T4S7 5183 aa3.75□□□□□ -1.81
CLIP1-218ENST00000545889 KRTAP8-1Q8IUC2 63 aa3.74□□□□□ -1.81
CLIP1-218ENST00000545889 INE1O15225 51 aa3.73□□□□□ -1.81
CLIP1-218ENST00000545889 MUC2Q02817 5179 aa3.73□□□□□ -1.81
CLIP1-218ENST00000545889 HMCN2Q8NDA2 5059 aa3.71□□□□□ -1.82
CLIP1-218ENST00000545889 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
CLIP1-218ENST00000545889 MT2AP02795 61 aa3.66□□□□□ -1.82
CLIP1-218ENST00000545889 LCE2CQ5TA81 110 aa3.66□□□□□ -1.82
CLIP1-218ENST00000545889 MT1FP04733 61 aa3.63□□□□□ -1.83
CLIP1-218ENST00000545889 FAT4Q6V0I7 4981 aa3.62□□□□□ -1.83
CLIP1-218ENST00000545889 KRTAP19-2Q3LHN2 52 aa3.62□□□□□ -1.83
CLIP1-218ENST00000545889 LCE3AQ5TA76 89 aa3.54□□□□□ -1.84
CLIP1-218ENST00000545889 SPRR2FQ96RM1 72 aa3.54□□□□□ -1.84
CLIP1-218ENST00000545889 MUC17Q685J3 4493 aa3.53□□□□□ -1.84
CLIP1-218ENST00000545889 KRTAP9-8Q9BYQ0 159 aa3.52□□□□□ -1.85
CLIP1-218ENST00000545889 FLGP20930 4061 aaPredicted RBP3.52□□□□□ -1.85
CLIP1-218ENST00000545889 FSIP2Q5CZC0 6907 aa3.51□□□□□ -1.85
CLIP1-218ENST00000545889 SPRR2GQ9BYE4 73 aa3.5□□□□□ -1.85
CLIP1-218ENST00000545889 KRTAP19-1Q8IUB9 90 aa3.48□□□□□ -1.85
CLIP1-218ENST00000545889 KRTAP10-5P60370 271 aa3.47□□□□□ -1.85
CLIP1-218ENST00000545889 KRTAP10-7P60409 375 aaPredicted RBP3.46□□□□□ -1.86
CLIP1-218ENST00000545889 KRTAP23-1A1A580 65 aa3.43□□□□□ -1.86
CLIP1-218ENST00000545889 KRTAP9-3Q9BYQ3 159 aa3.4□□□□□ -1.86
CLIP1-218ENST00000545889 SPRR5A0A1B0GTR4 108 aa3.4□□□□□ -1.87
CLIP1-218ENST00000545889 LCE2AQ5TA79 106 aaPredicted RBP3.4□□□□□ -1.87
CLIP1-218ENST00000545889 MT1BP07438 61 aa3.36□□□□□ -1.87
CLIP1-218ENST00000545889 KRTAP19-8Q3LI54 63 aa3.35□□□□□ -1.87
CLIP1-218ENST00000545889 LCE2BO14633 110 aa3.35□□□□□ -1.87
CLIP1-218ENST00000545889 SPRR2EP22531 72 aa3.34□□□□□ -1.88
CLIP1-218ENST00000545889 SPRR2BP35325 72 aa3.34□□□□□ -1.88
CLIP1-218ENST00000545889 SPRR2AP35326 72 aa3.34□□□□□ -1.88
CLIP1-218ENST00000545889 SYNE1Q8NF91 8797 aaKnown RBP3.32□□□□□ -1.88
CLIP1-218ENST00000545889 MT1XP80297 61 aa3.27□□□□□ -1.89
CLIP1-218ENST00000545889 KRTAP19-5Q3LI72 72 aa3.24□□□□□ -1.89
CLIP1-218ENST00000545889 SPRR2DP22532 72 aa3.23□□□□□ -1.89
CLIP1-218ENST00000545889 USH2AO75445 5202 aa3.22□□□□□ -1.89
CLIP1-218ENST00000545889 KRTAP9-2Q9BYQ4 174 aa3.21□□□□□ -1.89
CLIP1-218ENST00000545889 KRTAP4-8A0A0G2JLE6 195 aa3.18□□□□□ -1.9
CLIP1-218ENST00000545889 KRTAP4-8Q9BYQ9 185 aa3.18□□□□□ -1.9
CLIP1-218ENST00000545889 KRTAP12-4P60329 112 aa3.16□□□□□ -1.9
CLIP1-218ENST00000545889 KRTAP19-4Q3LI73 84 aa3.15□□□□□ -1.91
CLIP1-218ENST00000545889 LCE2DQ5TA82 110 aaPredicted RBP3.13□□□□□ -1.91
CLIP1-218ENST00000545889 LCE3CQ5T5A8 94 aa3.11□□□□□ -1.91
CLIP1-218ENST00000545889 KRTAP19-6Q3LI70 58 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms