RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CAMK2N1Q7Z7J9 78 aa3.02□□□□□ -1.93
USP28-213ENST00000544967 PCLOQ9Y6V0 5065 aa3.01□□□□□ -1.93
USP28-213ENST00000544967 IGKV2D-30A0A075B6S6 120 aa3.01□□□□□ -1.93
USP28-213ENST00000544967 LCE2AQ5TA79 106 aaPredicted RBP3.01□□□□□ -1.93
USP28-213ENST00000544967 KRTAP11-1Q8IUC1 163 aa3.01□□□□□ -1.93
USP28-213ENST00000544967 PANO1I0J062 215 aa3□□□□□ -1.93
USP28-213ENST00000544967 MYCBP2O75592 4640 aa2.98□□□□□ -1.93
USP28-213ENST00000544967 SSBP3-AS1Q7Z2R9 100 aa2.98□□□□□ -1.93
USP28-213ENST00000544967 SPINT4Q6UDR6 99 aa2.96□□□□□ -1.93
USP28-213ENST00000544967 FLG2Q5D862 2391 aaPredicted RBP2.96□□□□□ -1.94
USP28-213ENST00000544967 LINC00304Q8N9R0 145 aa2.96□□□□□ -1.94
USP28-213ENST00000544967 KRTAP4-5Q9BYR2 181 aa2.94□□□□□ -1.94
USP28-213ENST00000544967 Q5VSD8 79 aa2.94□□□□□ -1.94
USP28-213ENST00000544967 H0YAA0 97 aa2.93□□□□□ -1.94
USP28-213ENST00000544967 SPINK6Q6UWN8 80 aa2.92□□□□□ -1.94
USP28-213ENST00000544967 SRRM2Q9UQ35 2752 aaKnown RBP2.92□□□□□ -1.94
USP28-213ENST00000544967 MT1HL1P0DM35 61 aa2.91□□□□□ -1.94
USP28-213ENST00000544967 H1FX-AS1Q4G0G2 97 aa2.91□□□□□ -1.94
USP28-213ENST00000544967 KRTAP1-4P0C5Y4 121 aa2.9□□□□□ -1.94
USP28-213ENST00000544967 A0A1B0GU33 70 aa2.9□□□□□ -1.95
USP28-213ENST00000544967 PSORS1C2Q9UIG4 136 aa2.9□□□□□ -1.95
USP28-213ENST00000544967 COX6B2Q6YFQ2 88 aa2.89□□□□□ -1.95
USP28-213ENST00000544967 CRIPTQ9P021 101 aa2.89□□□□□ -1.95
USP28-213ENST00000544967 LRP1Q07954 4544 aaKnown RBP2.89□□□□□ -1.95
USP28-213ENST00000544967 KRTAP10-8P60410 259 aa2.89□□□□□ -1.95
USP28-213ENST00000544967 LOC100996750A0A140TA64 210 aa2.89□□□□□ -1.95
USP28-213ENST00000544967 KRTAP4-6Q9BYQ5 205 aa2.89□□□□□ -1.95
USP28-213ENST00000544967 MUC17Q685J3 4493 aa2.87□□□□□ -1.95
USP28-213ENST00000544967 HMCN2Q8NDA2 5059 aa2.87□□□□□ -1.95
USP28-213ENST00000544967 RPS29P62273 56 aaKnown RBP2.86□□□□□ -1.95
USP28-213ENST00000544967 KRTAP15-1Q3LI76 137 aa2.86□□□□□ -1.95
USP28-213ENST00000544967 LORP23490 312 aaPredicted RBP2.85□□□□□ -1.95
USP28-213ENST00000544967 SMR3BP02814 79 aaPredicted RBP2.84□□□□□ -1.96
USP28-213ENST00000544967 TYMSOSQ8TAI1 123 aa2.81□□□□□ -1.96
USP28-213ENST00000544967 KRTAP13-2Q52LG2 175 aa2.81□□□□□ -1.96
USP28-213ENST00000544967 HERC1Q15751 4861 aa2.81□□□□□ -1.96
USP28-213ENST00000544967 RPL37P61927 97 aaKnown RBP2.81□□□□□ -1.96
USP28-213ENST00000544967 SPINK1P00995 79 aa2.8□□□□□ -1.96
USP28-213ENST00000544967 KRTAP3-1Q9BYR8 98 aa2.79□□□□□ -1.96
USP28-213ENST00000544967 DMBT1Q9UGM3 2413 aaPredicted RBP2.79□□□□□ -1.96
USP28-213ENST00000544967 TPRXLQ17RH7 258 aa2.77□□□□□ -1.97
USP28-213ENST00000544967 R4GN34 69 aa2.72□□□□□ -1.97
USP28-213ENST00000544967 KRTAP10-6P60371 365 aaPredicted RBP2.72□□□□□ -1.97
USP28-213ENST00000544967 XP32Q5T750 250 aa2.7□□□□□ -1.98
USP28-213ENST00000544967 PRO2289Q9P1D8 64 aa2.7□□□□□ -1.98
USP28-213ENST00000544967 LPAP08519 4548 aa2.68□□□□□ -1.98
USP28-213ENST00000544967 UBR4Q5T4S7 5183 aa2.68□□□□□ -1.98
USP28-213ENST00000544967 S4R3F8 94 aa2.67□□□□□ -1.98
USP28-213ENST00000544967 KRTAP13-4Q3LI77 160 aa2.66□□□□□ -1.98
USP28-213ENST00000544967 KRTAP9-6A0A140TA67 174 aa2.64□□□□□ -1.99
USP28-213ENST00000544967 LRP2P98164 4655 aa2.64□□□□□ -1.99
USP28-213ENST00000544967 M0QZ58 72 aa2.63□□□□□ -1.99
USP28-213ENST00000544967 RNF213Q63HN8 5207 aa2.63□□□□□ -1.99
USP28-213ENST00000544967 C10orf95Q9H7T3 257 aa2.62□□□□□ -1.99
USP28-213ENST00000544967 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
USP28-213ENST00000544967 KRTAP12-2P59991 146 aa2.6□□□□□ -1.99
USP28-213ENST00000544967 KRTAP19-2Q3LHN2 52 aa2.59□□□□□ -2
USP28-213ENST00000544967 FLGP20930 4061 aaPredicted RBP2.59□□□□□ -2
USP28-213ENST00000544967 A0A0D9SG42 100 aa2.58□□□□□ -2
USP28-213ENST00000544967 PP632Q6XCG6 107 aa2.58□□□□□ -2
USP28-213ENST00000544967 PLAC4Q8WY50 150 aa2.57□□□□□ -2
USP28-213ENST00000544967 KRTAP9-2Q9BYQ4 174 aa2.57□□□□□ -2
USP28-213ENST00000544967 KRTAP4-8Q9BYQ9 185 aa2.56□□□□□ -2
USP28-213ENST00000544967 C9orf92A6NGG3 77 aa2.55□□□□□ -2
USP28-213ENST00000544967 KRTAP4-1Q9BYQ7 146 aa2.55□□□□□ -2
USP28-213ENST00000544967 FAT4Q6V0I7 4981 aa2.51□□□□□ -2.01
USP28-213ENST00000544967 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.51□□□□□ -2.01
USP28-213ENST00000544967 MUC2Q02817 5179 aa2.49□□□□□ -2.01
USP28-213ENST00000544967 SPRR5A0A1B0GTR4 108 aa2.48□□□□□ -2.01
USP28-213ENST00000544967 MT1HP80294 61 aa2.45□□□□□ -2.02
USP28-213ENST00000544967 INE1O15225 51 aa2.43□□□□□ -2.02
USP28-213ENST00000544967 LCE3BQ5TA77 95 aa2.43□□□□□ -2.02
USP28-213ENST00000544967 CRCT1Q9UGL9 99 aa2.4□□□□□ -2.03
USP28-213ENST00000544967 KRTAP4-8A0A0G2JLE6 195 aa2.39□□□□□ -2.03
USP28-213ENST00000544967 KRTAP4-12Q9BQ66 201 aa2.38□□□□□ -2.03
USP28-213ENST00000544967 KRTAP19-1Q8IUB9 90 aa2.37□□□□□ -2.03
USP28-213ENST00000544967 KRTAP9-9Q9BYP9 154 aa2.37□□□□□ -2.03
USP28-213ENST00000544967 KRTAP9-4Q9BYQ2 154 aa2.37□□□□□ -2.03
USP28-213ENST00000544967 KRTAP9-8Q9BYQ0 159 aa2.36□□□□□ -2.03
USP28-213ENST00000544967 KRTAP9-7A8MTY7 169 aa2.34□□□□□ -2.03
USP28-213ENST00000544967 KRTAP4-7Q9BYR0 210 aa2.33□□□□□ -2.04
USP28-213ENST00000544967 TNP1P09430 55 aa2.32□□□□□ -2.04
USP28-213ENST00000544967 MT2AP02795 61 aa2.3□□□□□ -2.04
USP28-213ENST00000544967 KRTAP9-3Q9BYQ3 159 aa2.29□□□□□ -2.04
USP28-213ENST00000544967 LCE4AQ5TA78 99 aa2.29□□□□□ -2.04
USP28-213ENST00000544967 FSIP2Q5CZC0 6907 aa2.28□□□□□ -2.04
USP28-213ENST00000544967 MT1FP04733 61 aa2.27□□□□□ -2.05
USP28-213ENST00000544967 KRTAP19-4Q3LI73 84 aa2.27□□□□□ -2.05
USP28-213ENST00000544967 LCE1DQ5T752 114 aa2.24□□□□□ -2.05
USP28-213ENST00000544967 LCE5AQ5TCM9 118 aa2.24□□□□□ -2.05
USP28-213ENST00000544967 KRTAP4-9Q9BYQ8 210 aa2.24□□□□□ -2.05
USP28-213ENST00000544967 SPRR2GQ9BYE4 73 aa2.23□□□□□ -2.05
USP28-213ENST00000544967 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
USP28-213ENST00000544967 KRTAP19-8Q3LI54 63 aa2.22□□□□□ -2.05
USP28-213ENST00000544967 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
USP28-213ENST00000544967 KRTAP2-2Q9BYT5 123 aa2.21□□□□□ -2.06
USP28-213ENST00000544967 USH2AO75445 5202 aa2.2□□□□□ -2.06
USP28-213ENST00000544967 KRTAP19-6Q3LI70 58 aa2.19□□□□□ -2.06
USP28-213ENST00000544967 M0R2T5 61 aa2.18□□□□□ -2.06
USP28-213ENST00000544967 MT1BP07438 61 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 428.7 ms