RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 IGKV2D-30A0A075B6S6 120 aa8.3□□□□□ -1.08
CHFR-223ENST00000544268 FAT3Q8TDW7 4589 aa8.29□□□□□ -1.08
CHFR-223ENST00000544268 MYCBP2O75592 4640 aa8.28□□□□□ -1.08
CHFR-223ENST00000544268 A8MUU9 505 aa8.24□□□□□ -1.09
CHFR-223ENST00000544268 RPS29P62273 56 aaKnown RBP8.24□□□□□ -1.09
CHFR-223ENST00000544268 KRTAP10-8P60410 259 aa8.22□□□□□ -1.09
CHFR-223ENST00000544268 C9orf92A6NGG3 77 aa8.19□□□□□ -1.1
CHFR-223ENST00000544268 KRTAP4-5Q9BYR2 181 aa8.19□□□□□ -1.1
CHFR-223ENST00000544268 HERC2O95714 4834 aa8.18□□□□□ -1.1
CHFR-223ENST00000544268 ABCA13Q86UQ4 5058 aa8.16□□□□□ -1.1
CHFR-223ENST00000544268 H0YAA0 97 aa8.15□□□□□ -1.1
CHFR-223ENST00000544268 DMBT1Q9UGM3 2413 aaPredicted RBP8.15□□□□□ -1.1
CHFR-223ENST00000544268 MT1HL1P0DM35 61 aa8.13□□□□□ -1.11
CHFR-223ENST00000544268 PCLOQ9Y6V0 5065 aa8.1□□□□□ -1.11
CHFR-223ENST00000544268 C20orf166-AS1Q96NR2 134 aa8.09□□□□□ -1.11
CHFR-223ENST00000544268 NDUFAF8A1L188 74 aa8.08□□□□□ -1.12
CHFR-223ENST00000544268 A0A1B0GU33 70 aa8.04□□□□□ -1.12
CHFR-223ENST00000544268 H1FX-AS1Q4G0G2 97 aa7.99□□□□□ -1.13
CHFR-223ENST00000544268 CRIPTQ9P021 101 aa7.97□□□□□ -1.13
CHFR-223ENST00000544268 KRTAP3-1Q9BYR8 98 aa7.95□□□□□ -1.14
CHFR-223ENST00000544268 K7ERS5 55 aa7.95□□□□□ -1.14
CHFR-223ENST00000544268 KRTAP15-1Q3LI76 137 aa7.93□□□□□ -1.14
CHFR-223ENST00000544268 SPINT4Q6UDR6 99 aa7.92□□□□□ -1.14
CHFR-223ENST00000544268 J3QL48 77 aa7.91□□□□□ -1.14
CHFR-223ENST00000544268 HERC1Q15751 4861 aa7.85□□□□□ -1.15
CHFR-223ENST00000544268 LUZP6Q538Z0 58 aa7.83□□□□□ -1.16
CHFR-223ENST00000544268 LPAP08519 4548 aa7.83□□□□□ -1.16
CHFR-223ENST00000544268 XP32Q5T750 250 aa7.8□□□□□ -1.16
CHFR-223ENST00000544268 COX6B2Q6YFQ2 88 aa7.79□□□□□ -1.16
CHFR-223ENST00000544268 LRP2P98164 4655 aa7.75□□□□□ -1.17
CHFR-223ENST00000544268 TPRXLQ17RH7 258 aa7.74□□□□□ -1.17
CHFR-223ENST00000544268 RPL37P61927 97 aaKnown RBP7.73□□□□□ -1.17
CHFR-223ENST00000544268 SEC61BP60468 96 aaKnown RBP7.67□□□□□ -1.18
CHFR-223ENST00000544268 LCE2DQ5TA82 110 aaPredicted RBP7.6□□□□□ -1.19
CHFR-223ENST00000544268 KRTAP3-3Q9BYR6 98 aa7.6□□□□□ -1.19
CHFR-223ENST00000544268 C10orf95Q9H7T3 257 aa7.58□□□□□ -1.2
CHFR-223ENST00000544268 KRTAP10-6P60371 365 aaPredicted RBP7.56□□□□□ -1.2
CHFR-223ENST00000544268 HMCN2Q8NDA2 5059 aa7.55□□□□□ -1.2
CHFR-223ENST00000544268 KRTAP13-4Q3LI77 160 aa7.54□□□□□ -1.2
CHFR-223ENST00000544268 A0A0D9SG42 100 aa7.54□□□□□ -1.2
CHFR-223ENST00000544268 KRTAP3-2Q9BYR7 98 aa7.46□□□□□ -1.22
CHFR-223ENST00000544268 S4R3F8 94 aa7.45□□□□□ -1.22
CHFR-223ENST00000544268 UBR4Q5T4S7 5183 aa7.43□□□□□ -1.22
CHFR-223ENST00000544268 MUC17Q685J3 4493 aa7.41□□□□□ -1.22
CHFR-223ENST00000544268 KRTAP4-1Q9BYQ7 146 aa7.39□□□□□ -1.23
CHFR-223ENST00000544268 KRTAP12-2P59991 146 aa7.36□□□□□ -1.23
CHFR-223ENST00000544268 MUC2Q02817 5179 aa7.33□□□□□ -1.24
CHFR-223ENST00000544268 RNF213Q63HN8 5207 aa7.3□□□□□ -1.24
CHFR-223ENST00000544268 KRTAP12-1P59990 96 aa7.28□□□□□ -1.24
CHFR-223ENST00000544268 KRTAP19-2Q3LHN2 52 aa7.17□□□□□ -1.26
CHFR-223ENST00000544268 M0QZ58 72 aa7.11□□□□□ -1.27
CHFR-223ENST00000544268 PLAC4Q8WY50 150 aa7.09□□□□□ -1.27
CHFR-223ENST00000544268 FLGP20930 4061 aaPredicted RBP7.06□□□□□ -1.28
CHFR-223ENST00000544268 LORP23490 312 aaPredicted RBP7.05□□□□□ -1.28
CHFR-223ENST00000544268 FAT4Q6V0I7 4981 aa7.04□□□□□ -1.28
CHFR-223ENST00000544268 CAMK2N1Q7Z7J9 78 aa7.03□□□□□ -1.28
CHFR-223ENST00000544268 LCE2CQ5TA81 110 aa6.99□□□□□ -1.29
CHFR-223ENST00000544268 R4GN34 69 aa6.92□□□□□ -1.3
CHFR-223ENST00000544268 MT1HP80294 61 aa6.84□□□□□ -1.31
CHFR-223ENST00000544268 PRO2289Q9P1D8 64 aa6.8□□□□□ -1.32
CHFR-223ENST00000544268 PP632Q6XCG6 107 aa6.78□□□□□ -1.32
CHFR-223ENST00000544268 M0R2T5 61 aa6.78□□□□□ -1.32
CHFR-223ENST00000544268 KRTAP9-8Q9BYQ0 159 aa6.6□□□□□ -1.35
CHFR-223ENST00000544268 LCE2AQ5TA79 106 aaPredicted RBP6.59□□□□□ -1.35
CHFR-223ENST00000544268 MT2AP02795 61 aa6.58□□□□□ -1.36
CHFR-223ENST00000544268 MT1FP04733 61 aa6.56□□□□□ -1.36
CHFR-223ENST00000544268 SPRR5A0A1B0GTR4 108 aa6.53□□□□□ -1.36
CHFR-223ENST00000544268 KRTAP10-10P60014 251 aa6.53□□□□□ -1.36
CHFR-223ENST00000544268 LCE2BO14633 110 aa6.49□□□□□ -1.37
CHFR-223ENST00000544268 KRTAP19-1Q8IUB9 90 aa6.45□□□□□ -1.38
CHFR-223ENST00000544268 SPRR2GQ9BYE4 73 aa6.44□□□□□ -1.38
CHFR-223ENST00000544268 KRTAP23-1A1A580 65 aa6.43□□□□□ -1.38
CHFR-223ENST00000544268 INE1O15225 51 aa6.43□□□□□ -1.38
CHFR-223ENST00000544268 TNP1P09430 55 aa6.36□□□□□ -1.39
CHFR-223ENST00000544268 KRTAP9-3Q9BYQ3 159 aa6.35□□□□□ -1.39
CHFR-223ENST00000544268 FSIP2Q5CZC0 6907 aa6.31□□□□□ -1.4
CHFR-223ENST00000544268 KRTAP19-8Q3LI54 63 aa6.26□□□□□ -1.41
CHFR-223ENST00000544268 MT1BP07438 61 aa6.2□□□□□ -1.42
CHFR-223ENST00000544268 USH2AO75445 5202 aa6.13□□□□□ -1.43
CHFR-223ENST00000544268 KRTAP9-2Q9BYQ4 174 aa6.09□□□□□ -1.43
CHFR-223ENST00000544268 LCE3AQ5TA76 89 aa6.07□□□□□ -1.44
CHFR-223ENST00000544268 MT1XP80297 61 aa6.02□□□□□ -1.45
CHFR-223ENST00000544268 KRTAP10-5P60370 271 aa6□□□□□ -1.45
CHFR-223ENST00000544268 SSPOA2VEC9 5147 aa5.94□□□□□ -1.46
CHFR-223ENST00000544268 KMT2DO14686 5537 aa5.91□□□□□ -1.46
CHFR-223ENST00000544268 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
CHFR-223ENST00000544268 KRTAP8-1Q8IUC2 63 aa5.81□□□□□ -1.48
CHFR-223ENST00000544268 KRTAP10-12P60413 245 aa5.79□□□□□ -1.48
CHFR-223ENST00000544268 CRCT1Q9UGL9 99 aa5.76□□□□□ -1.49
CHFR-223ENST00000544268 KRTAP19-6Q3LI70 58 aa5.75□□□□□ -1.49
CHFR-223ENST00000544268 KRTAP9-6A0A140TA67 174 aa5.74□□□□□ -1.49
CHFR-223ENST00000544268 KRTAP12-3P60328 96 aa5.72□□□□□ -1.49
CHFR-223ENST00000544268 FCGBPQ9Y6R7 5405 aaPredicted RBP5.7□□□□□ -1.5
CHFR-223ENST00000544268 KRTAP4-8A0A0G2JLE6 195 aa5.6□□□□□ -1.51
CHFR-223ENST00000544268 KRTAP4-8Q9BYQ9 185 aa5.6□□□□□ -1.51
CHFR-223ENST00000544268 KRTAP19-5Q3LI72 72 aa5.58□□□□□ -1.52
CHFR-223ENST00000544268 MACF1Q9UPN3 7388 aaKnown RBP5.54□□□□□ -1.52
CHFR-223ENST00000544268 SYNE2Q8WXH0 6885 aaKnown RBP5.53□□□□□ -1.52
CHFR-223ENST00000544268 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.37□□□□□ -1.55
CHFR-223ENST00000544268 KRTAP19-7Q3SYF9 63 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms