RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 IGKV2-30P06310 120 aa4.56□□□□□ -1.68
CHD4-208ENST00000540960 KRTAP13-3Q3SY46 172 aa4.56□□□□□ -1.68
CHD4-208ENST00000540960 Q75L30 129 aa4.56□□□□□ -1.68
CHD4-208ENST00000540960 Q5W150 140 aa4.55□□□□□ -1.68
CHD4-208ENST00000540960 C7orf65Q6ZTY9 151 aa4.55□□□□□ -1.68
CHD4-208ENST00000540960 KRTAP20-1Q3LI63 56 aa4.54□□□□□ -1.68
CHD4-208ENST00000540960 V9GYY9 64 aa4.54□□□□□ -1.68
CHD4-208ENST00000540960 ACYP2P14621 99 aa4.53□□□□□ -1.68
CHD4-208ENST00000540960 TPRXLQ17RH7 258 aa4.53□□□□□ -1.68
CHD4-208ENST00000540960 KRTAP6-3Q3LI67 103 aa4.53□□□□□ -1.68
CHD4-208ENST00000540960 ATP11AUNQ6ZP68 121 aa4.53□□□□□ -1.68
CHD4-208ENST00000540960 A8MUN3 132 aa4.52□□□□□ -1.69
CHD4-208ENST00000540960 PCOTHQ58A44 107 aa4.52□□□□□ -1.69
CHD4-208ENST00000540960 NEBP20929 6669 aa4.51□□□□□ -1.69
CHD4-208ENST00000540960 C9orf92A6NGG3 77 aa4.51□□□□□ -1.69
CHD4-208ENST00000540960 IGKV2D-30A0A075B6S6 120 aa4.5□□□□□ -1.69
CHD4-208ENST00000540960 HRES1P13985 223 aa4.48□□□□□ -1.69
CHD4-208ENST00000540960 DMAC1Q96GE9 116 aa4.47□□□□□ -1.69
CHD4-208ENST00000540960 CHKB-CPT1BH3BT56 60 aa4.46□□□□□ -1.7
CHD4-208ENST00000540960 RPL37P61927 97 aaKnown RBP4.46□□□□□ -1.7
CHD4-208ENST00000540960 COA5Q86WW8 74 aa4.46□□□□□ -1.7
CHD4-208ENST00000540960 SPTSSBQ8NFR3 76 aa4.46□□□□□ -1.7
CHD4-208ENST00000540960 M0R2T5 61 aa4.45□□□□□ -1.7
CHD4-208ENST00000540960 XP32Q5T750 250 aa4.45□□□□□ -1.7
CHD4-208ENST00000540960 SPINK7P58062 85 aa4.43□□□□□ -1.7
CHD4-208ENST00000540960 Q1T7F1 81 aa4.43□□□□□ -1.7
CHD4-208ENST00000540960 LOC100996750A0A140TA64 210 aa4.41□□□□□ -1.7
CHD4-208ENST00000540960 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
CHD4-208ENST00000540960 SEC61BP60468 96 aaKnown RBP4.39□□□□□ -1.71
CHD4-208ENST00000540960 FLGP20930 4061 aaPredicted RBP4.38□□□□□ -1.71
CHD4-208ENST00000540960 PRR15LQ9BU68 103 aa4.38□□□□□ -1.71
CHD4-208ENST00000540960 PRO0628Q9UI54 55 aa4.37□□□□□ -1.71
CHD4-208ENST00000540960 COX6B2Q6YFQ2 88 aa4.36□□□□□ -1.71
CHD4-208ENST00000540960 MPLKIPQ8TAP9 179 aa4.36□□□□□ -1.71
CHD4-208ENST00000540960 C4orf26Q17RF5 130 aa4.34□□□□□ -1.71
CHD4-208ENST00000540960 LINC01558Q9Y6Z2 57 aa4.34□□□□□ -1.71
CHD4-208ENST00000540960 RBM12B-AS1Q9P1G2 102 aa4.32□□□□□ -1.72
CHD4-208ENST00000540960 MUC12Q9UKN1 5478 aa4.32□□□□□ -1.72
CHD4-208ENST00000540960 KRTAP9-8Q9BYQ0 159 aa4.31□□□□□ -1.72
CHD4-208ENST00000540960 A0A1B0GU69 56 aa4.28□□□□□ -1.72
CHD4-208ENST00000540960 PSPHP1O15172 72 aa4.26□□□□□ -1.73
CHD4-208ENST00000540960 KRTAP19-6Q3LI70 58 aa4.26□□□□□ -1.73
CHD4-208ENST00000540960 H1FX-AS1Q4G0G2 97 aa4.25□□□□□ -1.73
CHD4-208ENST00000540960 A6NED7 52 aa4.22□□□□□ -1.73
CHD4-208ENST00000540960 KRTAP2-3P0C7H8 128 aa4.22□□□□□ -1.73
CHD4-208ENST00000540960 Q5VV11 94 aa4.22□□□□□ -1.73
CHD4-208ENST00000540960 KRTAP2-4Q9BYR9 128 aa4.22□□□□□ -1.73
CHD4-208ENST00000540960 S4R3F8 94 aa4.22□□□□□ -1.73
CHD4-208ENST00000540960 KMT2DO14686 5537 aa4.22□□□□□ -1.73
CHD4-208ENST00000540960 KRTAP3-1Q9BYR8 98 aa4.21□□□□□ -1.74
CHD4-208ENST00000540960 BRK1Q8WUW1 75 aa4.2□□□□□ -1.74
CHD4-208ENST00000540960 KRTAP9-3Q9BYQ3 159 aa4.2□□□□□ -1.74
CHD4-208ENST00000540960 UQCR11O14957 56 aa4.19□□□□□ -1.74
CHD4-208ENST00000540960 GPR98Q8WXG9 6306 aa4.18□□□□□ -1.74
CHD4-208ENST00000540960 CSAG1Q6PB30 78 aa4.17□□□□□ -1.74
CHD4-208ENST00000540960 MT2AP02795 61 aa4.16□□□□□ -1.74
CHD4-208ENST00000540960 CDC42SE1Q9NRR8 79 aa4.16□□□□□ -1.74
CHD4-208ENST00000540960 MT1FP04733 61 aa4.15□□□□□ -1.75
CHD4-208ENST00000540960 KRTAP4-8Q9BYQ9 185 aa4.15□□□□□ -1.75
CHD4-208ENST00000540960 PMAIP1Q13794 54 aa4.14□□□□□ -1.75
CHD4-208ENST00000540960 LCA10Q71F78 164 aa4.13□□□□□ -1.75
CHD4-208ENST00000540960 A0A1B0GU33 70 aa4.11□□□□□ -1.75
CHD4-208ENST00000540960 MIR22HGQ0VDD5 57 aa4.11□□□□□ -1.75
CHD4-208ENST00000540960 SPATA8Q6RVD6 105 aa4.11□□□□□ -1.75
CHD4-208ENST00000540960 H0YAA0 97 aa4.1□□□□□ -1.75
CHD4-208ENST00000540960 K7ERS5 55 aa4.07□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP4-12Q9BQ66 201 aa4.07□□□□□ -1.76
CHD4-208ENST00000540960 MDN1Q9NU22 5596 aa4.06□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP23-1A1A580 65 aa4.05□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP10-10P60014 251 aa4.05□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP19-4Q3LI73 84 aa4.04□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP2-2Q9BYT5 123 aa4.04□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP2-1Q9BYU5 128 aa4.04□□□□□ -1.76
CHD4-208ENST00000540960 M0QZ58 72 aa4.03□□□□□ -1.76
CHD4-208ENST00000540960 KRTAP5-9P26371 169 aa4.02□□□□□ -1.77
CHD4-208ENST00000540960 ADM2Q7Z4H4 148 aa4□□□□□ -1.77
CHD4-208ENST00000540960 LCE3BQ5TA77 95 aa3.99□□□□□ -1.77
CHD4-208ENST00000540960 A0A0A0MQY5 61 aa3.97□□□□□ -1.77
CHD4-208ENST00000540960 CRIPTQ9P021 101 aa3.96□□□□□ -1.78
CHD4-208ENST00000540960 KTN1-AS1Q86SY8 53 aa3.93□□□□□ -1.78
CHD4-208ENST00000540960 R4GN34 69 aa3.92□□□□□ -1.78
CHD4-208ENST00000540960 P0C880 135 aa3.91□□□□□ -1.78
CHD4-208ENST00000540960 A6NN06 94 aa3.9□□□□□ -1.79
CHD4-208ENST00000540960 LCE4AQ5TA78 99 aa3.9□□□□□ -1.79
CHD4-208ENST00000540960 KRTAP9-9Q9BYP9 154 aa3.89□□□□□ -1.79
CHD4-208ENST00000540960 KRTAP9-4Q9BYQ2 154 aa3.89□□□□□ -1.79
CHD4-208ENST00000540960 A8MU10 97 aa3.87□□□□□ -1.79
CHD4-208ENST00000540960 SPRR2EP22531 72 aa3.86□□□□□ -1.79
CHD4-208ENST00000540960 SPRR2BP35325 72 aa3.86□□□□□ -1.79
CHD4-208ENST00000540960 SPRR2AP35326 72 aa3.86□□□□□ -1.79
CHD4-208ENST00000540960 A0A0D9SG42 100 aa3.83□□□□□ -1.8
CHD4-208ENST00000540960 KRTAP13-4Q3LI77 160 aa3.81□□□□□ -1.8
CHD4-208ENST00000540960 SPINT4Q6UDR6 99 aa3.79□□□□□ -1.8
CHD4-208ENST00000540960 ROMO1P60602 79 aa3.78□□□□□ -1.8
CHD4-208ENST00000540960 KRTAP4-8A0A0G2JLE6 195 aa3.76□□□□□ -1.81
CHD4-208ENST00000540960 KRTAP12-1P59990 96 aa3.76□□□□□ -1.81
CHD4-208ENST00000540960 LINC01554Q52M75 96 aa3.76□□□□□ -1.81
CHD4-208ENST00000540960 SPRR2FQ96RM1 72 aa3.75□□□□□ -1.81
CHD4-208ENST00000540960 SPRR2DP22532 72 aa3.74□□□□□ -1.81
CHD4-208ENST00000540960 LCE1AQ5T7P2 110 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms