RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 SPRR2AP35326 72 aa0.6□□□□□ -2.31
PRKDC-209ENST00000540819 KMT2DO14686 5537 aa0.59□□□□□ -2.31
PRKDC-209ENST00000540819 FAT4Q6V0I7 4981 aa0.59□□□□□ -2.31
PRKDC-209ENST00000540819 TLN1Q9Y490 2541 aaKnown RBP0.59□□□□□ -2.31
PRKDC-209ENST00000540819 HECTD4Q9Y4D8 3996 aa0.59□□□□□ -2.31
PRKDC-209ENST00000540819 MGAM2Q2M2H8 2515 aa0.59□□□□□ -2.32
PRKDC-209ENST00000540819 BOD1L1Q8NFC6 3051 aa0.58□□□□□ -2.32
PRKDC-209ENST00000540819 ITPR2Q14571 2701 aa0.58□□□□□ -2.32
PRKDC-209ENST00000540819 TGP01266 2768 aa0.58□□□□□ -2.32
PRKDC-209ENST00000540819 DMXL1Q9Y485 3027 aa0.57□□□□□ -2.32
PRKDC-209ENST00000540819 CFAP47Q6ZTR5 3102 aa0.57□□□□□ -2.32
PRKDC-209ENST00000540819 NBEAQ8NFP9 2946 aa0.57□□□□□ -2.32
PRKDC-209ENST00000540819 PHGR1C9JFL3 82 aa0.56□□□□□ -2.32
PRKDC-209ENST00000540819 KRTAP6-2Q3LI66 62 aa0.56□□□□□ -2.32
PRKDC-209ENST00000540819 MDN1Q9NU22 5596 aa0.56□□□□□ -2.32
PRKDC-209ENST00000540819 DNAH12Q6ZR08 3092 aa0.55□□□□□ -2.32
PRKDC-209ENST00000540819 SZT2Q5T011 3432 aa0.55□□□□□ -2.32
PRKDC-209ENST00000540819 SACSQ9NZJ4 4579 aa0.55□□□□□ -2.32
PRKDC-209ENST00000540819 ABCA13Q86UQ4 5058 aa0.55□□□□□ -2.32
PRKDC-209ENST00000540819 TACC2O95359 2948 aa0.54□□□□□ -2.32
PRKDC-209ENST00000540819 MT1AP04731 61 aa0.54□□□□□ -2.32
PRKDC-209ENST00000540819 RPL39LQ96EH5 51 aaKnown RBP0.54□□□□□ -2.32
PRKDC-209ENST00000540819 NIPBLQ6KC79 2804 aaeCLIP0.54□□□□□ -2.32
PRKDC-209ENST00000540819 MUC5ACP98088 5654 aa0.54□□□□□ -2.32
PRKDC-209ENST00000540819 EYSQ5T1H1 3165 aa0.53□□□□□ -2.32
PRKDC-209ENST00000540819 PKD1P98161 4303 aa0.53□□□□□ -2.32
PRKDC-209ENST00000540819 SSPOA2VEC9 5147 aa0.53□□□□□ -2.32
PRKDC-209ENST00000540819 SPEGQ15772 3267 aa0.53□□□□□ -2.32
PRKDC-209ENST00000540819 DNAH3Q8TD57 4116 aa0.53□□□□□ -2.32
PRKDC-209ENST00000540819 COL12A1Q99715 3063 aa0.53□□□□□ -2.33
PRKDC-209ENST00000540819 FLGP20930 4061 aaPredicted RBP0.53□□□□□ -2.33
PRKDC-209ENST00000540819 HSPG2P98160 4391 aa0.52□□□□□ -2.33
PRKDC-209ENST00000540819 LRBAP50851 2863 aa0.52□□□□□ -2.33
PRKDC-209ENST00000540819 HYDINQ4G0P3 5121 aa0.51□□□□□ -2.33
PRKDC-209ENST00000540819 RNF213Q63HN8 5207 aa0.51□□□□□ -2.33
PRKDC-209ENST00000540819 CRYBG3Q68DQ2 2970 aa0.51□□□□□ -2.33
PRKDC-209ENST00000540819 KRTAP20-1Q3LI63 56 aa0.51□□□□□ -2.33
PRKDC-209ENST00000540819 EPPK1P58107 5090 aaKnown RBP0.51□□□□□ -2.33
PRKDC-209ENST00000540819 HERC1Q15751 4861 aa0.51□□□□□ -2.33
PRKDC-209ENST00000540819 SPENQ96T58 3664 aaKnown RBP0.51□□□□□ -2.33
PRKDC-209ENST00000540819 VCANP13611 3396 aa0.51□□□□□ -2.33
PRKDC-209ENST00000540819 RANBP2P49792 3224 aaKnown RBP0.5□□□□□ -2.33
PRKDC-209ENST00000540819 C5orf42Q9H799 3197 aa0.5□□□□□ -2.33
PRKDC-209ENST00000540819 WDR87Q6ZQQ6 2873 aa0.5□□□□□ -2.33
PRKDC-209ENST00000540819 RYR3Q15413 4870 aa0.49□□□□□ -2.33
PRKDC-209ENST00000540819 CENPEQ02224 2701 aa0.49□□□□□ -2.33
PRKDC-209ENST00000540819 TOMM7Q9P0U1 55 aa0.48□□□□□ -2.33
PRKDC-209ENST00000540819 MAP1AP78559 2803 aaPredicted RBP0.48□□□□□ -2.33
PRKDC-209ENST00000540819 EP400Q96L91 3159 aa0.47□□□□□ -2.33
PRKDC-209ENST00000540819 SVEP1Q4LDE5 3571 aa0.47□□□□□ -2.33
PRKDC-209ENST00000540819 SPRR2EP22531 72 aa0.47□□□□□ -2.33
PRKDC-209ENST00000540819 HMCN2Q8NDA2 5059 aa0.47□□□□□ -2.33
PRKDC-209ENST00000540819 ZFHX4Q86UP3 3567 aa0.47□□□□□ -2.33
PRKDC-209ENST00000540819 MKI67P46013 3256 aaKnown RBP0.47□□□□□ -2.33
PRKDC-209ENST00000540819 UNC80Q8N2C7 3258 aa0.46□□□□□ -2.34
PRKDC-209ENST00000540819 DCHS1Q96JQ0 3298 aa0.46□□□□□ -2.34
PRKDC-209ENST00000540819 DNAH11Q96DT5 4516 aa0.46□□□□□ -2.34
PRKDC-209ENST00000540819 BIRC6Q9NR09 4857 aa0.46□□□□□ -2.34
PRKDC-209ENST00000540819 ANK3Q12955 4377 aaKnown RBP0.45□□□□□ -2.34
PRKDC-209ENST00000540819 SPART-AS1P0CW21 52 aa0.45□□□□□ -2.34
PRKDC-209ENST00000540819 CSMD1Q96PZ7 3565 aa0.45□□□□□ -2.34
PRKDC-209ENST00000540819 DMXL2Q8TDJ6 3036 aa0.44□□□□□ -2.34
PRKDC-209ENST00000540819 KRTAP8-1Q8IUC2 63 aa0.44□□□□□ -2.34
PRKDC-209ENST00000540819 FREM2Q5SZK8 3169 aa0.44□□□□□ -2.34
PRKDC-209ENST00000540819 PKHD1L1Q86WI1 4243 aa0.44□□□□□ -2.34
PRKDC-209ENST00000540819 FRYLO94915 3013 aa0.43□□□□□ -2.34
PRKDC-209ENST00000540819 LEAP2Q969E1 77 aa0.43□□□□□ -2.34
PRKDC-209ENST00000540819 DNHD1Q96M86 4753 aa0.43□□□□□ -2.34
PRKDC-209ENST00000540819 CENPFP49454 3210 aa0.43□□□□□ -2.34
PRKDC-209ENST00000540819 LRP1BQ9NZR2 4599 aa0.43□□□□□ -2.34
PRKDC-209ENST00000540819 PKHD1P08F94 4074 aa0.42□□□□□ -2.34
PRKDC-209ENST00000540819 RELNP78509 3460 aa0.42□□□□□ -2.34
PRKDC-209ENST00000540819 DNAH9Q9NYC9 4486 aa0.41□□□□□ -2.34
PRKDC-209ENST00000540819 SPRR2FQ96RM1 72 aa0.41□□□□□ -2.34
PRKDC-209ENST00000540819 MGAQ8IWI9 3026 aa0.41□□□□□ -2.34
PRKDC-209ENST00000540819 HTTP42858 3142 aa0.41□□□□□ -2.34
PRKDC-209ENST00000540819 CFAP54Q96N23 3096 aa0.41□□□□□ -2.34
PRKDC-209ENST00000540819 LAMA3Q16787 3333 aa0.39□□□□□ -2.35
PRKDC-209ENST00000540819 CHD7Q9P2D1 2997 aa0.39□□□□□ -2.35
PRKDC-209ENST00000540819 AKAP9Q99996 3911 aa0.39□□□□□ -2.35
PRKDC-209ENST00000540819 MUC3AQ02505 3323 aa0.38□□□□□ -2.35
PRKDC-209ENST00000540819 VPS13AQ96RL7 3174 aa0.38□□□□□ -2.35
PRKDC-209ENST00000540819 FRYQ5TBA9 3013 aa0.38□□□□□ -2.35
PRKDC-209ENST00000540819 ARHGAP5-AS1Q96IT6 56 aa0.37□□□□□ -2.35
PRKDC-209ENST00000540819 DYNC2H1Q8NCM8 4307 aaKnown RBP0.37□□□□□ -2.35
PRKDC-209ENST00000540819 LAMA1P25391 3075 aa0.36□□□□□ -2.35
PRKDC-209ENST00000540819 LAMA5O15230 3695 aa0.36□□□□□ -2.35
PRKDC-209ENST00000540819 HERC2O95714 4834 aa0.36□□□□□ -2.35
PRKDC-209ENST00000540819 DNAH2Q9P225 4427 aa0.35□□□□□ -2.35
PRKDC-209ENST00000540819 LOC400499M0QZD8 3231 aa0.35□□□□□ -2.35
PRKDC-209ENST00000540819 BRCA2P51587 3418 aa0.35□□□□□ -2.35
PRKDC-209ENST00000540819 SPTBN5Q9NRC6 3674 aaKnown RBP0.35□□□□□ -2.35
PRKDC-209ENST00000540819 ASPMQ8IZT6 3477 aa0.34□□□□□ -2.36
PRKDC-209ENST00000540819 ATMQ13315 3056 aa0.34□□□□□ -2.36
PRKDC-209ENST00000540819 USH2AO75445 5202 aa0.33□□□□□ -2.36
PRKDC-209ENST00000540819 VPS13DQ5THJ4 4388 aa0.33□□□□□ -2.36
PRKDC-209ENST00000540819 KRTAP19-5Q3LI72 72 aa0.33□□□□□ -2.36
PRKDC-209ENST00000540819 DNAH6Q9C0G6 4158 aa0.33□□□□□ -2.36
PRKDC-209ENST00000540819 LRP2P98164 4655 aa0.32□□□□□ -2.36
PRKDC-209ENST00000540819 LINC01590Q5TEZ4 76 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms