RNA–Protein interactions for RNA: ENST00000539563.5

LSAMP-207, Transcript of limbic system associated membrane protein, humanhuman

TSL 3 BASIC

Gene LSAMP, Length 8,821 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-207ENST00000539563 PCLOQ9Y6V0 5065 aa3.31□□□□□ -1.88
LSAMP-207ENST00000539563 HECTD4Q9Y4D8 3996 aa3.3□□□□□ -1.88
LSAMP-207ENST00000539563 EPPK1P58107 5090 aaKnown RBP3.29□□□□□ -1.88
LSAMP-207ENST00000539563 PLECQ15149 4684 aaKnown RBP3.29□□□□□ -1.88
LSAMP-207ENST00000539563 DNAH17Q9UFH2 4485 aa3.29□□□□□ -1.88
LSAMP-207ENST00000539563 DNAH6Q9C0G6 4158 aa3.29□□□□□ -1.88
LSAMP-207ENST00000539563 FAT3Q8TDW7 4589 aa3.26□□□□□ -1.89
LSAMP-207ENST00000539563 VPS13DQ5THJ4 4388 aa3.25□□□□□ -1.89
LSAMP-207ENST00000539563 DNAH10Q8IVF4 4471 aa3.24□□□□□ -1.89
LSAMP-207ENST00000539563 SACSQ9NZJ4 4579 aa3.23□□□□□ -1.89
LSAMP-207ENST00000539563 HUWE1Q7Z6Z7 4374 aaKnown RBP3.22□□□□□ -1.89
LSAMP-207ENST00000539563 TGP01266 2768 aa3.19□□□□□ -1.9
LSAMP-207ENST00000539563 PKHD1P08F94 4074 aa3.19□□□□□ -1.9
LSAMP-207ENST00000539563 DNAH5Q8TE73 4624 aa3.19□□□□□ -1.9
LSAMP-207ENST00000539563 KRTAP13-4Q3LI77 160 aa3.18□□□□□ -1.9
LSAMP-207ENST00000539563 PKHD1L1Q86WI1 4243 aa3.18□□□□□ -1.9
LSAMP-207ENST00000539563 KRTAP12-2P59991 146 aa3.18□□□□□ -1.9
LSAMP-207ENST00000539563 ABCA13Q86UQ4 5058 aa3.17□□□□□ -1.9
LSAMP-207ENST00000539563 KMT2AQ03164 3969 aa3.16□□□□□ -1.9
LSAMP-207ENST00000539563 DNAH8Q96JB1 4490 aa3.16□□□□□ -1.9
LSAMP-207ENST00000539563 KRTAP12-1P59990 96 aa3.14□□□□□ -1.91
LSAMP-207ENST00000539563 VPS13BQ7Z7G8 4022 aa3.14□□□□□ -1.91
LSAMP-207ENST00000539563 TENM2Q9NT68 2774 aa3.13□□□□□ -1.91
LSAMP-207ENST00000539563 RYR1P21817 5038 aa3.11□□□□□ -1.91
LSAMP-207ENST00000539563 TENM3Q9P273 2699 aa3.09□□□□□ -1.92
LSAMP-207ENST00000539563 KRTAP3-1Q9BYR8 98 aa3.08□□□□□ -1.92
LSAMP-207ENST00000539563 SRRM2Q9UQ35 2752 aaKnown RBP3.08□□□□□ -1.92
LSAMP-207ENST00000539563 ALMS1Q8TCU4 4167 aa3.07□□□□□ -1.92
LSAMP-207ENST00000539563 LRP1BQ9NZR2 4599 aa3.04□□□□□ -1.92
LSAMP-207ENST00000539563 KRTAP15-1Q3LI76 137 aa3.04□□□□□ -1.92
LSAMP-207ENST00000539563 HERC2O95714 4834 aa3.03□□□□□ -1.92
LSAMP-207ENST00000539563 KRTAP10-6P60371 365 aaPredicted RBP3.01□□□□□ -1.93
LSAMP-207ENST00000539563 APOBP04114 4563 aaKnown RBP3.01□□□□□ -1.93
LSAMP-207ENST00000539563 KIAA1109Q2LD37 5005 aa2.99□□□□□ -1.93
LSAMP-207ENST00000539563 DYNC1H1Q14204 4646 aaKnown RBP2.99□□□□□ -1.93
LSAMP-207ENST00000539563 BIRC6Q9NR09 4857 aa2.99□□□□□ -1.93
LSAMP-207ENST00000539563 MT1HL1P0DM35 61 aa2.95□□□□□ -1.94
LSAMP-207ENST00000539563 HMCN2Q8NDA2 5059 aa2.93□□□□□ -1.94
LSAMP-207ENST00000539563 HSPG2P98160 4391 aa2.93□□□□□ -1.94
LSAMP-207ENST00000539563 INE1O15225 51 aa2.92□□□□□ -1.94
LSAMP-207ENST00000539563 KRTAP3-3Q9BYR6 98 aa2.91□□□□□ -1.94
LSAMP-207ENST00000539563 KRTAP10-12P60413 245 aa2.91□□□□□ -1.94
LSAMP-207ENST00000539563 TNXBP22105 4242 aa2.91□□□□□ -1.94
LSAMP-207ENST00000539563 UBR4Q5T4S7 5183 aa2.9□□□□□ -1.95
LSAMP-207ENST00000539563 KRTAP3-2Q9BYR7 98 aa2.9□□□□□ -1.95
LSAMP-207ENST00000539563 KRTAP23-1A1A580 65 aa2.89□□□□□ -1.95
LSAMP-207ENST00000539563 HERC1Q15751 4861 aa2.87□□□□□ -1.95
LSAMP-207ENST00000539563 KRTAP10-4P60372 401 aaPredicted RBP2.86□□□□□ -1.95
LSAMP-207ENST00000539563 MYCBP2O75592 4640 aa2.86□□□□□ -1.95
LSAMP-207ENST00000539563 KRTAP12-3P60328 96 aa2.81□□□□□ -1.96
LSAMP-207ENST00000539563 FAT1Q14517 4588 aa2.81□□□□□ -1.96
LSAMP-207ENST00000539563 KRTAP4-5Q9BYR2 181 aa2.79□□□□□ -1.96
LSAMP-207ENST00000539563 RNF213Q63HN8 5207 aa2.78□□□□□ -1.96
LSAMP-207ENST00000539563 MUC2Q02817 5179 aa2.78□□□□□ -1.96
LSAMP-207ENST00000539563 KRTAP17-1Q9BYP8 105 aa2.78□□□□□ -1.97
LSAMP-207ENST00000539563 LRP1Q07954 4544 aaKnown RBP2.77□□□□□ -1.97
LSAMP-207ENST00000539563 CRCT1Q9UGL9 99 aa2.77□□□□□ -1.97
LSAMP-207ENST00000539563 LCE3AQ5TA76 89 aa2.77□□□□□ -1.97
LSAMP-207ENST00000539563 LPAP08519 4548 aa2.73□□□□□ -1.97
LSAMP-207ENST00000539563 LORP23490 312 aaPredicted RBP2.69□□□□□ -1.98
LSAMP-207ENST00000539563 KRTAP8-1Q8IUC2 63 aa2.68□□□□□ -1.98
LSAMP-207ENST00000539563 FAT4Q6V0I7 4981 aa2.64□□□□□ -1.99
LSAMP-207ENST00000539563 FLGP20930 4061 aaPredicted RBP2.64□□□□□ -1.99
LSAMP-207ENST00000539563 MUC17Q685J3 4493 aa2.61□□□□□ -1.99
LSAMP-207ENST00000539563 KRTAP10-5P60370 271 aa2.6□□□□□ -1.99
LSAMP-207ENST00000539563 MT1HP80294 61 aa2.6□□□□□ -1.99
LSAMP-207ENST00000539563 SPRR2GQ9BYE4 73 aa2.6□□□□□ -1.99
LSAMP-207ENST00000539563 KRTAP19-4Q3LI73 84 aa2.59□□□□□ -1.99
LSAMP-207ENST00000539563 KRTAP4-1Q9BYQ7 146 aa2.57□□□□□ -2
LSAMP-207ENST00000539563 LRP2P98164 4655 aa2.54□□□□□ -2
LSAMP-207ENST00000539563 MT2AP02795 61 aa2.53□□□□□ -2
LSAMP-207ENST00000539563 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
LSAMP-207ENST00000539563 KRTAP19-5Q3LI72 72 aa2.47□□□□□ -2.01
LSAMP-207ENST00000539563 LCE3CQ5T5A8 94 aa2.47□□□□□ -2.01
LSAMP-207ENST00000539563 MT1FP04733 61 aa2.47□□□□□ -2.01
LSAMP-207ENST00000539563 MT3P25713 68 aa2.45□□□□□ -2.02
LSAMP-207ENST00000539563 SPRR2FQ96RM1 72 aa2.45□□□□□ -2.02
LSAMP-207ENST00000539563 KRTAP19-8Q3LI54 63 aa2.39□□□□□ -2.03
LSAMP-207ENST00000539563 KRTAP19-2Q3LHN2 52 aa2.38□□□□□ -2.03
LSAMP-207ENST00000539563 USH2AO75445 5202 aa2.37□□□□□ -2.03
LSAMP-207ENST00000539563 SPRR2EP22531 72 aa2.34□□□□□ -2.04
LSAMP-207ENST00000539563 SPRR2BP35325 72 aa2.34□□□□□ -2.04
LSAMP-207ENST00000539563 SPRR2AP35326 72 aa2.34□□□□□ -2.04
LSAMP-207ENST00000539563 SSPOA2VEC9 5147 aa2.33□□□□□ -2.04
LSAMP-207ENST00000539563 KRTAP19-1Q8IUB9 90 aa2.33□□□□□ -2.04
LSAMP-207ENST00000539563 MT1XP80297 61 aa2.3□□□□□ -2.04
LSAMP-207ENST00000539563 LCE2BO14633 110 aa2.28□□□□□ -2.04
LSAMP-207ENST00000539563 KRTAP9-8Q9BYQ0 159 aa2.27□□□□□ -2.05
LSAMP-207ENST00000539563 SPRR2DP22532 72 aa2.26□□□□□ -2.05
LSAMP-207ENST00000539563 LCE3BQ5TA77 95 aa2.26□□□□□ -2.05
LSAMP-207ENST00000539563 MT1BP07438 61 aa2.25□□□□□ -2.05
LSAMP-207ENST00000539563 KRTAP12-4P60329 112 aa2.25□□□□□ -2.05
LSAMP-207ENST00000539563 MT1GP13640 62 aa2.24□□□□□ -2.05
LSAMP-207ENST00000539563 LCE2DQ5TA82 110 aaPredicted RBP2.23□□□□□ -2.05
LSAMP-207ENST00000539563 SPRR5A0A1B0GTR4 108 aa2.21□□□□□ -2.06
LSAMP-207ENST00000539563 KRTAP9-3Q9BYQ3 159 aa2.21□□□□□ -2.06
LSAMP-207ENST00000539563 LCE2CQ5TA81 110 aa2.18□□□□□ -2.06
LSAMP-207ENST00000539563 KRTAP4-8A0A0G2JLE6 195 aa2.16□□□□□ -2.06
LSAMP-207ENST00000539563 KRTAP4-8Q9BYQ9 185 aa2.16□□□□□ -2.06
LSAMP-207ENST00000539563 LCE3DQ9BYE3 92 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms