RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 UQCR11O14957 56 aa10.49□□□□□ -0.73
SMPDL3A-203ENST00000539041 ABCA13Q86UQ4 5058 aa10.47□□□□□ -0.73
SMPDL3A-203ENST00000539041 SPATA8Q6RVD6 105 aa10.44□□□□□ -0.74
SMPDL3A-203ENST00000539041 HERC2O95714 4834 aa10.44□□□□□ -0.74
SMPDL3A-203ENST00000539041 LRP2P98164 4655 aa10.43□□□□□ -0.74
SMPDL3A-203ENST00000539041 S4R3F8 94 aa10.43□□□□□ -0.74
SMPDL3A-203ENST00000539041 LPAP08519 4548 aa10.42□□□□□ -0.74
SMPDL3A-203ENST00000539041 MIR22HGQ0VDD5 57 aa10.42□□□□□ -0.74
SMPDL3A-203ENST00000539041 KRTAP3-3Q9BYR6 98 aa10.4□□□□□ -0.74
SMPDL3A-203ENST00000539041 H1FX-AS1Q4G0G2 97 aa10.39□□□□□ -0.75
SMPDL3A-203ENST00000539041 SEC61BP60468 96 aaKnown RBP10.37□□□□□ -0.75
SMPDL3A-203ENST00000539041 RBM12B-AS1Q9P1G2 102 aa10.37□□□□□ -0.75
SMPDL3A-203ENST00000539041 PMAIP1Q13794 54 aa10.36□□□□□ -0.75
SMPDL3A-203ENST00000539041 PCLOQ9Y6V0 5065 aa10.34□□□□□ -0.75
SMPDL3A-203ENST00000539041 A0A1B0GU33 70 aa10.29□□□□□ -0.76
SMPDL3A-203ENST00000539041 A6NN06 94 aa10.26□□□□□ -0.77
SMPDL3A-203ENST00000539041 H0YAA0 97 aa10.21□□□□□ -0.78
SMPDL3A-203ENST00000539041 KRTAP10-6P60371 365 aaPredicted RBP10.16□□□□□ -0.78
SMPDL3A-203ENST00000539041 KRTAP4-1Q9BYQ7 146 aa10.15□□□□□ -0.78
SMPDL3A-203ENST00000539041 MUC17Q685J3 4493 aa10.14□□□□□ -0.79
SMPDL3A-203ENST00000539041 KRTAP3-2Q9BYR7 98 aa10.14□□□□□ -0.79
SMPDL3A-203ENST00000539041 CSAG1Q6PB30 78 aa10.11□□□□□ -0.79
SMPDL3A-203ENST00000539041 KTN1-AS1Q86SY8 53 aa10.06□□□□□ -0.8
SMPDL3A-203ENST00000539041 ADM2Q7Z4H4 148 aa10.02□□□□□ -0.81
SMPDL3A-203ENST00000539041 P0C880 135 aa10.01□□□□□ -0.81
SMPDL3A-203ENST00000539041 KRTAP13-4Q3LI77 160 aa9.96□□□□□ -0.82
SMPDL3A-203ENST00000539041 KRTAP19-2Q3LHN2 52 aa9.93□□□□□ -0.82
SMPDL3A-203ENST00000539041 K7ERS5 55 aa9.86□□□□□ -0.83
SMPDL3A-203ENST00000539041 HERC1Q15751 4861 aa9.81□□□□□ -0.84
SMPDL3A-203ENST00000539041 A0A0D9SG42 100 aa9.81□□□□□ -0.84
SMPDL3A-203ENST00000539041 HMCN2Q8NDA2 5059 aa9.79□□□□□ -0.84
SMPDL3A-203ENST00000539041 M0QZ58 72 aa9.77□□□□□ -0.85
SMPDL3A-203ENST00000539041 PRAC1Q96KF2 57 aa9.7□□□□□ -0.86
SMPDL3A-203ENST00000539041 R4GN34 69 aa9.62□□□□□ -0.87
SMPDL3A-203ENST00000539041 FLGP20930 4061 aaPredicted RBP9.61□□□□□ -0.87
SMPDL3A-203ENST00000539041 KRTAP12-1P59990 96 aa9.6□□□□□ -0.87
SMPDL3A-203ENST00000539041 KRTAP12-2P59991 146 aa9.6□□□□□ -0.87
SMPDL3A-203ENST00000539041 LORP23490 312 aaPredicted RBP9.56□□□□□ -0.88
SMPDL3A-203ENST00000539041 SPINT4Q6UDR6 99 aa9.55□□□□□ -0.88
SMPDL3A-203ENST00000539041 LCE2CQ5TA81 110 aa9.53□□□□□ -0.88
SMPDL3A-203ENST00000539041 ROMO1P60602 79 aa9.52□□□□□ -0.88
SMPDL3A-203ENST00000539041 MUC2Q02817 5179 aa9.51□□□□□ -0.89
SMPDL3A-203ENST00000539041 LINC01554Q52M75 96 aa9.48□□□□□ -0.89
SMPDL3A-203ENST00000539041 KRTAP25-1Q3LHN0 102 aa9.35□□□□□ -0.91
SMPDL3A-203ENST00000539041 CRIPTQ9P021 101 aa9.35□□□□□ -0.91
SMPDL3A-203ENST00000539041 RNF213Q63HN8 5207 aa9.32□□□□□ -0.92
SMPDL3A-203ENST00000539041 MT1HP80294 61 aa9.32□□□□□ -0.92
SMPDL3A-203ENST00000539041 M0R2T5 61 aa9.27□□□□□ -0.92
SMPDL3A-203ENST00000539041 UBR4Q5T4S7 5183 aa9.21□□□□□ -0.94
SMPDL3A-203ENST00000539041 FAT4Q6V0I7 4981 aa9.14□□□□□ -0.95
SMPDL3A-203ENST00000539041 C10orf95Q9H7T3 257 aa9.09□□□□□ -0.95
SMPDL3A-203ENST00000539041 CAMK2N1Q7Z7J9 78 aa9.07□□□□□ -0.96
SMPDL3A-203ENST00000539041 SPRR2GQ9BYE4 73 aa9.07□□□□□ -0.96
SMPDL3A-203ENST00000539041 MT2AP02795 61 aa9.05□□□□□ -0.96
SMPDL3A-203ENST00000539041 KRTAP9-8Q9BYQ0 159 aa9.02□□□□□ -0.97
SMPDL3A-203ENST00000539041 MT1FP04733 61 aa9.01□□□□□ -0.97
SMPDL3A-203ENST00000539041 KRTAP10-10P60014 251 aa9□□□□□ -0.97
SMPDL3A-203ENST00000539041 KRTAP19-1Q8IUB9 90 aa9□□□□□ -0.97
SMPDL3A-203ENST00000539041 PLAC4Q8WY50 150 aa8.88□□□□□ -0.99
SMPDL3A-203ENST00000539041 KRTAP19-8Q3LI54 63 aa8.77□□□□□ -1.01
SMPDL3A-203ENST00000539041 TNP1P09430 55 aa8.69□□□□□ -1.02
SMPDL3A-203ENST00000539041 KRTAP9-3Q9BYQ3 159 aa8.68□□□□□ -1.02
SMPDL3A-203ENST00000539041 PP632Q6XCG6 107 aa8.66□□□□□ -1.02
SMPDL3A-203ENST00000539041 MT1BP07438 61 aa8.63□□□□□ -1.03
SMPDL3A-203ENST00000539041 LCE2AQ5TA79 106 aaPredicted RBP8.63□□□□□ -1.03
SMPDL3A-203ENST00000539041 KRTAP23-1A1A580 65 aa8.53□□□□□ -1.04
SMPDL3A-203ENST00000539041 KRTAP9-2Q9BYQ4 174 aa8.47□□□□□ -1.05
SMPDL3A-203ENST00000539041 MT1XP80297 61 aa8.44□□□□□ -1.06
SMPDL3A-203ENST00000539041 KRTAP10-5P60370 271 aa8.43□□□□□ -1.06
SMPDL3A-203ENST00000539041 KRTAP15-1Q3LI76 137 aa8.39□□□□□ -1.07
SMPDL3A-203ENST00000539041 LCE2BO14633 110 aa8.38□□□□□ -1.07
SMPDL3A-203ENST00000539041 KRTAP9-6A0A140TA67 174 aa8.31□□□□□ -1.08
SMPDL3A-203ENST00000539041 PRO2289Q9P1D8 64 aa8.27□□□□□ -1.08
SMPDL3A-203ENST00000539041 LCE3AQ5TA76 89 aa8.27□□□□□ -1.09
SMPDL3A-203ENST00000539041 KRTAP10-12P60413 245 aa8.15□□□□□ -1.11
SMPDL3A-203ENST00000539041 KRTAP10-7P60409 375 aaPredicted RBP8.14□□□□□ -1.11
SMPDL3A-203ENST00000539041 KRTAP8-1Q8IUC2 63 aa8.1□□□□□ -1.11
SMPDL3A-203ENST00000539041 LCE2DQ5TA82 110 aaPredicted RBP8.07□□□□□ -1.12
SMPDL3A-203ENST00000539041 CRCT1Q9UGL9 99 aa7.97□□□□□ -1.13
SMPDL3A-203ENST00000539041 USH2AO75445 5202 aa7.96□□□□□ -1.13
SMPDL3A-203ENST00000539041 NDUFAF8A1L188 74 aa7.92□□□□□ -1.14
SMPDL3A-203ENST00000539041 KRTAP12-3P60328 96 aa7.91□□□□□ -1.14
SMPDL3A-203ENST00000539041 FSIP2Q5CZC0 6907 aa7.88□□□□□ -1.15
SMPDL3A-203ENST00000539041 SPRR5A0A1B0GTR4 108 aa7.85□□□□□ -1.15
SMPDL3A-203ENST00000539041 LUZP6Q538Z0 58 aa7.78□□□□□ -1.16
SMPDL3A-203ENST00000539041 KRTAP19-6Q3LI70 58 aa7.75□□□□□ -1.17
SMPDL3A-203ENST00000539041 SSPOA2VEC9 5147 aa7.73□□□□□ -1.17
SMPDL3A-203ENST00000539041 KRTAP19-5Q3LI72 72 aa7.73□□□□□ -1.17
SMPDL3A-203ENST00000539041 KRTAP4-8A0A0G2JLE6 195 aa7.71□□□□□ -1.18
SMPDL3A-203ENST00000539041 KRTAP4-8Q9BYQ9 185 aa7.71□□□□□ -1.18
SMPDL3A-203ENST00000539041 H3BS24 57 aa7.64□□□□□ -1.19
SMPDL3A-203ENST00000539041 KMT2DO14686 5537 aa7.52□□□□□ -1.2
SMPDL3A-203ENST00000539041 KRTAP19-7Q3SYF9 63 aa7.52□□□□□ -1.21
SMPDL3A-203ENST00000539041 KRTAP9-7A8MTY7 169 aa7.44□□□□□ -1.22
SMPDL3A-203ENST00000539041 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.41□□□□□ -1.22
SMPDL3A-203ENST00000539041 LCE3CQ5T5A8 94 aa7.41□□□□□ -1.22
SMPDL3A-203ENST00000539041 MT1EP04732 61 aa7.36□□□□□ -1.23
SMPDL3A-203ENST00000539041 KRTAP19-4Q3LI73 84 aa7.31□□□□□ -1.24
SMPDL3A-203ENST00000539041 MT1LQ93083 61 aa7.28□□□□□ -1.24
SMPDL3A-203ENST00000539041 FCGBPQ9Y6R7 5405 aaPredicted RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms