RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 KRTAP17-1Q9BYP8 105 aa3.62□□□□□ -1.83
USP28-206ENST00000538224 KRTAP10-8P60410 259 aa3.61□□□□□ -1.83
USP28-206ENST00000538224 LORP23490 312 aaPredicted RBP3.6□□□□□ -1.83
USP28-206ENST00000538224 A0A1B0GU69 56 aa3.59□□□□□ -1.83
USP28-206ENST00000538224 FAT3Q8TDW7 4589 aa3.58□□□□□ -1.84
USP28-206ENST00000538224 FLG2Q5D862 2391 aaPredicted RBP3.58□□□□□ -1.84
USP28-206ENST00000538224 Q8N1X5 172 aa3.58□□□□□ -1.84
USP28-206ENST00000538224 HSPG2P98160 4391 aa3.57□□□□□ -1.84
USP28-206ENST00000538224 SPINK7P58062 85 aa3.56□□□□□ -1.84
USP28-206ENST00000538224 LCE1DQ5T752 114 aa3.56□□□□□ -1.84
USP28-206ENST00000538224 RPL37P61927 97 aaKnown RBP3.54□□□□□ -1.84
USP28-206ENST00000538224 LCE2CQ5TA81 110 aa3.54□□□□□ -1.84
USP28-206ENST00000538224 PRAC1Q96KF2 57 aa3.54□□□□□ -1.84
USP28-206ENST00000538224 TNXBP22105 4242 aa3.54□□□□□ -1.84
USP28-206ENST00000538224 RYR1P21817 5038 aa3.54□□□□□ -1.84
USP28-206ENST00000538224 UQCR11O14957 56 aa3.53□□□□□ -1.84
USP28-206ENST00000538224 COX6B2Q6YFQ2 88 aa3.53□□□□□ -1.84
USP28-206ENST00000538224 RYR3Q15413 4870 aa3.53□□□□□ -1.84
USP28-206ENST00000538224 KRTAP4-2Q9BYR5 136 aa3.52□□□□□ -1.85
USP28-206ENST00000538224 LRP1Q07954 4544 aaKnown RBP3.5□□□□□ -1.85
USP28-206ENST00000538224 SPATA8Q6RVD6 105 aa3.5□□□□□ -1.85
USP28-206ENST00000538224 KRTAP4-9Q9BYQ8 210 aa3.5□□□□□ -1.85
USP28-206ENST00000538224 MT1HL1P0DM35 61 aa3.49□□□□□ -1.85
USP28-206ENST00000538224 MIR22HGQ0VDD5 57 aa3.49□□□□□ -1.85
USP28-206ENST00000538224 TPRXLQ17RH7 258 aa3.48□□□□□ -1.85
USP28-206ENST00000538224 KRTAP5-3Q6L8H2 238 aa3.47□□□□□ -1.85
USP28-206ENST00000538224 ADM2Q7Z4H4 148 aa3.47□□□□□ -1.85
USP28-206ENST00000538224 KRTAP3-1Q9BYR8 98 aa3.47□□□□□ -1.85
USP28-206ENST00000538224 A0A0A0MQY5 61 aa3.45□□□□□ -1.86
USP28-206ENST00000538224 ROMO1P60602 79 aa3.45□□□□□ -1.86
USP28-206ENST00000538224 CSAG1Q6PB30 78 aa3.45□□□□□ -1.86
USP28-206ENST00000538224 KRTAP9-8Q9BYQ0 159 aa3.44□□□□□ -1.86
USP28-206ENST00000538224 KIAA1109Q2LD37 5005 aa3.44□□□□□ -1.86
USP28-206ENST00000538224 KRTAP19-1Q8IUB9 90 aa3.42□□□□□ -1.86
USP28-206ENST00000538224 S4R3F8 94 aa3.42□□□□□ -1.86
USP28-206ENST00000538224 DMBT1Q9UGM3 2413 aaPredicted RBP3.41□□□□□ -1.86
USP28-206ENST00000538224 A0A1B0GU33 70 aa3.41□□□□□ -1.86
USP28-206ENST00000538224 H1FX-AS1Q4G0G2 97 aa3.41□□□□□ -1.86
USP28-206ENST00000538224 MYCBP2O75592 4640 aa3.4□□□□□ -1.86
USP28-206ENST00000538224 KRTAP25-1Q3LHN0 102 aa3.38□□□□□ -1.87
USP28-206ENST00000538224 EPPK1P58107 5090 aaKnown RBP3.38□□□□□ -1.87
USP28-206ENST00000538224 SEC61BP60468 96 aaKnown RBP3.37□□□□□ -1.87
USP28-206ENST00000538224 H0YAA0 97 aa3.36□□□□□ -1.87
USP28-206ENST00000538224 K7ERS5 55 aa3.36□□□□□ -1.87
USP28-206ENST00000538224 J3QL48 77 aa3.35□□□□□ -1.87
USP28-206ENST00000538224 BIRC6Q9NR09 4857 aa3.35□□□□□ -1.87
USP28-206ENST00000538224 KRTAP4-5Q9BYR2 181 aa3.32□□□□□ -1.88
USP28-206ENST00000538224 P0C880 135 aa3.31□□□□□ -1.88
USP28-206ENST00000538224 KRTAP4-11Q9BYQ6 195 aa3.3□□□□□ -1.88
USP28-206ENST00000538224 LRP2P98164 4655 aa3.29□□□□□ -1.88
USP28-206ENST00000538224 KRTAP10-6P60371 365 aaPredicted RBP3.29□□□□□ -1.88
USP28-206ENST00000538224 HERC2O95714 4834 aa3.26□□□□□ -1.89
USP28-206ENST00000538224 M0QZ58 72 aa3.25□□□□□ -1.89
USP28-206ENST00000538224 LPAP08519 4548 aa3.23□□□□□ -1.89
USP28-206ENST00000538224 MUC17Q685J3 4493 aa3.23□□□□□ -1.89
USP28-206ENST00000538224 ABCA13Q86UQ4 5058 aa3.23□□□□□ -1.89
USP28-206ENST00000538224 KRTAP13-4Q3LI77 160 aa3.21□□□□□ -1.9
USP28-206ENST00000538224 PCLOQ9Y6V0 5065 aa3.19□□□□□ -1.9
USP28-206ENST00000538224 A0A0D9SG42 100 aa3.19□□□□□ -1.9
USP28-206ENST00000538224 KRTAP15-1Q3LI76 137 aa3.18□□□□□ -1.9
USP28-206ENST00000538224 NDUFAF8A1L188 74 aa3.17□□□□□ -1.9
USP28-206ENST00000538224 R4GN34 69 aa3.16□□□□□ -1.9
USP28-206ENST00000538224 LUZP6Q538Z0 58 aa3.15□□□□□ -1.91
USP28-206ENST00000538224 SPINT4Q6UDR6 99 aa3.15□□□□□ -1.91
USP28-206ENST00000538224 KRTAP4-1Q9BYQ7 146 aa3.15□□□□□ -1.91
USP28-206ENST00000538224 KRTAP12-1P59990 96 aa3.14□□□□□ -1.91
USP28-206ENST00000538224 KRTAP12-2P59991 146 aa3.12□□□□□ -1.91
USP28-206ENST00000538224 KRTAP19-2Q3LHN2 52 aa3.12□□□□□ -1.91
USP28-206ENST00000538224 CRIPTQ9P021 101 aa3.1□□□□□ -1.91
USP28-206ENST00000538224 HMCN2Q8NDA2 5059 aa3.07□□□□□ -1.92
USP28-206ENST00000538224 HERC1Q15751 4861 aa3.06□□□□□ -1.92
USP28-206ENST00000538224 FLGP20930 4061 aaPredicted RBP3.04□□□□□ -1.92
USP28-206ENST00000538224 UBR4Q5T4S7 5183 aa3.01□□□□□ -1.93
USP28-206ENST00000538224 CAMK2N1Q7Z7J9 78 aa3□□□□□ -1.93
USP28-206ENST00000538224 C10orf95Q9H7T3 257 aa2.96□□□□□ -1.94
USP28-206ENST00000538224 M0R2T5 61 aa2.95□□□□□ -1.94
USP28-206ENST00000538224 LCE5AQ5TCM9 118 aa2.95□□□□□ -1.94
USP28-206ENST00000538224 PP632Q6XCG6 107 aa2.94□□□□□ -1.94
USP28-206ENST00000538224 MT1HP80294 61 aa2.93□□□□□ -1.94
USP28-206ENST00000538224 SPRR2GQ9BYE4 73 aa2.92□□□□□ -1.94
USP28-206ENST00000538224 MUC2Q02817 5179 aa2.91□□□□□ -1.94
USP28-206ENST00000538224 PLAC4Q8WY50 150 aa2.9□□□□□ -1.95
USP28-206ENST00000538224 KRTAP23-1A1A580 65 aa2.89□□□□□ -1.95
USP28-206ENST00000538224 TNP1P09430 55 aa2.88□□□□□ -1.95
USP28-206ENST00000538224 MT2AP02795 61 aa2.86□□□□□ -1.95
USP28-206ENST00000538224 KRTAP10-10P60014 251 aa2.86□□□□□ -1.95
USP28-206ENST00000538224 RNF213Q63HN8 5207 aa2.85□□□□□ -1.95
USP28-206ENST00000538224 LCE4AQ5TA78 99 aa2.85□□□□□ -1.95
USP28-206ENST00000538224 FAT4Q6V0I7 4981 aa2.84□□□□□ -1.95
USP28-206ENST00000538224 MT1FP04733 61 aa2.83□□□□□ -1.96
USP28-206ENST00000538224 KRTAP19-8Q3LI54 63 aa2.82□□□□□ -1.96
USP28-206ENST00000538224 PRO2289Q9P1D8 64 aa2.82□□□□□ -1.96
USP28-206ENST00000538224 MT1BP07438 61 aa2.73□□□□□ -1.97
USP28-206ENST00000538224 INE1O15225 51 aa2.72□□□□□ -1.97
USP28-206ENST00000538224 KRTAP9-3Q9BYQ3 159 aa2.72□□□□□ -1.97
USP28-206ENST00000538224 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
USP28-206ENST00000538224 MT1XP80297 61 aa2.68□□□□□ -1.98
USP28-206ENST00000538224 KRTAP9-7A8MTY7 169 aa2.67□□□□□ -1.98
USP28-206ENST00000538224 LCE3AQ5TA76 89 aa2.67□□□□□ -1.98
USP28-206ENST00000538224 SPRR5A0A1B0GTR4 108 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms