RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 KRTAP13-2Q52LG2 175 aa5.77□□□□□ -1.49
RTN3-208ENST00000537981 FAT2Q9NYQ8 4349 aa5.75□□□□□ -1.49
RTN3-208ENST00000537981 APLNQ9ULZ1 77 aa5.74□□□□□ -1.49
RTN3-208ENST00000537981 A0A0D9SG42 100 aa5.73□□□□□ -1.49
RTN3-208ENST00000537981 DNAH5Q8TE73 4624 aa5.72□□□□□ -1.49
RTN3-208ENST00000537981 KRTAP13-4Q3LI77 160 aa5.72□□□□□ -1.49
RTN3-208ENST00000537981 NBDYA0A0U1RRE5 68 aa5.71□□□□□ -1.5
RTN3-208ENST00000537981 VPS13BQ7Z7G8 4022 aa5.7□□□□□ -1.5
RTN3-208ENST00000537981 EPPK1P58107 5090 aaKnown RBP5.68□□□□□ -1.5
RTN3-208ENST00000537981 RPL37P61927 97 aaKnown RBP5.63□□□□□ -1.51
RTN3-208ENST00000537981 PKHD1P08F94 4074 aa5.6□□□□□ -1.51
RTN3-208ENST00000537981 KRTAP10-6P60371 365 aaPredicted RBP5.59□□□□□ -1.51
RTN3-208ENST00000537981 C9orf92A6NGG3 77 aa5.58□□□□□ -1.52
RTN3-208ENST00000537981 KRTAP1-4P0C5Y4 121 aa5.54□□□□□ -1.52
RTN3-208ENST00000537981 KRTAP12-2P59991 146 aa5.54□□□□□ -1.52
RTN3-208ENST00000537981 PKD1P98161 4303 aa5.53□□□□□ -1.52
RTN3-208ENST00000537981 KIAA1109Q2LD37 5005 aa5.5□□□□□ -1.53
RTN3-208ENST00000537981 S4R3F8 94 aa5.49□□□□□ -1.53
RTN3-208ENST00000537981 BIRC6Q9NR09 4857 aa5.47□□□□□ -1.53
RTN3-208ENST00000537981 KRTAP10-2P60368 255 aa5.46□□□□□ -1.53
RTN3-208ENST00000537981 DYNC1H1Q14204 4646 aaKnown RBP5.45□□□□□ -1.54
RTN3-208ENST00000537981 A0A1B0GVY2 172 aa5.44□□□□□ -1.54
RTN3-208ENST00000537981 HSPG2P98160 4391 aa5.43□□□□□ -1.54
RTN3-208ENST00000537981 XP32Q5T750 250 aa5.4□□□□□ -1.55
RTN3-208ENST00000537981 KRTAP12-1P59990 96 aa5.39□□□□□ -1.55
RTN3-208ENST00000537981 APOBP04114 4563 aaKnown RBP5.39□□□□□ -1.55
RTN3-208ENST00000537981 RYR1P21817 5038 aa5.36□□□□□ -1.55
RTN3-208ENST00000537981 FAT1Q14517 4588 aa5.36□□□□□ -1.55
RTN3-208ENST00000537981 MYCBP2O75592 4640 aa5.36□□□□□ -1.55
RTN3-208ENST00000537981 KRTAP10-1P60331 282 aa5.36□□□□□ -1.55
RTN3-208ENST00000537981 PKHD1L1Q86WI1 4243 aa5.32□□□□□ -1.56
RTN3-208ENST00000537981 SMR3BP02814 79 aaPredicted RBP5.32□□□□□ -1.56
RTN3-208ENST00000537981 KRTAP17-1Q9BYP8 105 aa5.32□□□□□ -1.56
RTN3-208ENST00000537981 KRTAP10-8P60410 259 aa5.31□□□□□ -1.56
RTN3-208ENST00000537981 PCLOQ9Y6V0 5065 aa5.31□□□□□ -1.56
RTN3-208ENST00000537981 HERC2O95714 4834 aa5.31□□□□□ -1.56
RTN3-208ENST00000537981 R4GN34 69 aa5.3□□□□□ -1.56
RTN3-208ENST00000537981 ABCA13Q86UQ4 5058 aa5.3□□□□□ -1.56
RTN3-208ENST00000537981 LPAP08519 4548 aa5.29□□□□□ -1.56
RTN3-208ENST00000537981 PLAC4Q8WY50 150 aa5.29□□□□□ -1.56
RTN3-208ENST00000537981 LRP1Q07954 4544 aaKnown RBP5.27□□□□□ -1.57
RTN3-208ENST00000537981 KRTAP4-5Q9BYR2 181 aa5.27□□□□□ -1.57
RTN3-208ENST00000537981 PRO2289Q9P1D8 64 aa5.26□□□□□ -1.57
RTN3-208ENST00000537981 FAT3Q8TDW7 4589 aa5.2□□□□□ -1.58
RTN3-208ENST00000537981 Q5VSD8 79 aa5.2□□□□□ -1.58
RTN3-208ENST00000537981 TNXBP22105 4242 aa5.15□□□□□ -1.58
RTN3-208ENST00000537981 RPS29P62273 56 aaKnown RBP5.15□□□□□ -1.58
RTN3-208ENST00000537981 HERC1Q15751 4861 aa5.11□□□□□ -1.59
RTN3-208ENST00000537981 KRTAP10-4P60372 401 aaPredicted RBP5.09□□□□□ -1.59
RTN3-208ENST00000537981 LRP2P98164 4655 aa5.02□□□□□ -1.61
RTN3-208ENST00000537981 M0QZ58 72 aa5.01□□□□□ -1.61
RTN3-208ENST00000537981 MT1HL1P0DM35 61 aa4.92□□□□□ -1.62
RTN3-208ENST00000537981 INE1O15225 51 aa4.9□□□□□ -1.63
RTN3-208ENST00000537981 HMCN2Q8NDA2 5059 aa4.86□□□□□ -1.63
RTN3-208ENST00000537981 UBR4Q5T4S7 5183 aa4.85□□□□□ -1.63
RTN3-208ENST00000537981 RNF213Q63HN8 5207 aa4.79□□□□□ -1.64
RTN3-208ENST00000537981 SPRR5A0A1B0GTR4 108 aa4.79□□□□□ -1.64
RTN3-208ENST00000537981 PP632Q6XCG6 107 aa4.76□□□□□ -1.65
RTN3-208ENST00000537981 MUC2Q02817 5179 aa4.73□□□□□ -1.65
RTN3-208ENST00000537981 MUC17Q685J3 4493 aa4.67□□□□□ -1.66
RTN3-208ENST00000537981 LCE5AQ5TCM9 118 aa4.66□□□□□ -1.66
RTN3-208ENST00000537981 KRTAP19-4Q3LI73 84 aa4.56□□□□□ -1.68
RTN3-208ENST00000537981 TNP1P09430 55 aa4.54□□□□□ -1.68
RTN3-208ENST00000537981 FAT4Q6V0I7 4981 aa4.52□□□□□ -1.69
RTN3-208ENST00000537981 KRTAP9-4Q9BYQ2 154 aa4.49□□□□□ -1.69
RTN3-208ENST00000537981 KRTAP4-1Q9BYQ7 146 aa4.48□□□□□ -1.69
RTN3-208ENST00000537981 FLGP20930 4061 aaPredicted RBP4.45□□□□□ -1.7
RTN3-208ENST00000537981 LCE3AQ5TA76 89 aa4.41□□□□□ -1.7
RTN3-208ENST00000537981 KRTAP19-2Q3LHN2 52 aa4.37□□□□□ -1.71
RTN3-208ENST00000537981 KRTAP2-2Q9BYT5 123 aa4.36□□□□□ -1.71
RTN3-208ENST00000537981 KRTAP9-9Q9BYP9 154 aa4.29□□□□□ -1.72
RTN3-208ENST00000537981 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
RTN3-208ENST00000537981 KRTAP10-12P60413 245 aa4.2□□□□□ -1.74
RTN3-208ENST00000537981 KRTAP9-6A0A140TA67 174 aa4.19□□□□□ -1.74
RTN3-208ENST00000537981 KRTAP9-7A8MTY7 169 aa4.19□□□□□ -1.74
RTN3-208ENST00000537981 MT1HP80294 61 aa4.18□□□□□ -1.74
RTN3-208ENST00000537981 FSIP2Q5CZC0 6907 aa4.17□□□□□ -1.74
RTN3-208ENST00000537981 M0R2T5 61 aa4.17□□□□□ -1.74
RTN3-208ENST00000537981 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
RTN3-208ENST00000537981 KRTAP8-1Q8IUC2 63 aa4.14□□□□□ -1.75
RTN3-208ENST00000537981 KRTAP10-10P60014 251 aa4.13□□□□□ -1.75
RTN3-208ENST00000537981 KRTAP19-1Q8IUB9 90 aa4.13□□□□□ -1.75
RTN3-208ENST00000537981 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
RTN3-208ENST00000537981 KRTAP4-6Q9BYQ5 205 aa4.09□□□□□ -1.75
RTN3-208ENST00000537981 KRTAP12-3P60328 96 aa4.09□□□□□ -1.76
RTN3-208ENST00000537981 SPRR2GQ9BYE4 73 aa4.04□□□□□ -1.76
RTN3-208ENST00000537981 KMT2DO14686 5537 aa4.02□□□□□ -1.77
RTN3-208ENST00000537981 KRTAP9-2Q9BYQ4 174 aa4.02□□□□□ -1.77
RTN3-208ENST00000537981 USH2AO75445 5202 aa4.01□□□□□ -1.77
RTN3-208ENST00000537981 LCE1AQ5T7P2 110 aa4□□□□□ -1.77
RTN3-208ENST00000537981 KRTAP10-5P60370 271 aa3.99□□□□□ -1.77
RTN3-208ENST00000537981 KRTAP9-6A8MVA2 160 aa3.97□□□□□ -1.77
RTN3-208ENST00000537981 KRTAP9-8Q9BYQ0 159 aa3.97□□□□□ -1.77
RTN3-208ENST00000537981 KRTAP10-7P60409 375 aaPredicted RBP3.96□□□□□ -1.78
RTN3-208ENST00000537981 MT2AP02795 61 aa3.93□□□□□ -1.78
RTN3-208ENST00000537981 MT1XP80297 61 aa3.93□□□□□ -1.78
RTN3-208ENST00000537981 MT1FP04733 61 aa3.92□□□□□ -1.78
RTN3-208ENST00000537981 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
RTN3-208ENST00000537981 MT3P25713 68 aa3.88□□□□□ -1.79
RTN3-208ENST00000537981 SSPOA2VEC9 5147 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms