RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 hDV103S1A0JD37 113 aa4.48□□□□□ -1.69
USP28-205ENST00000537706 A6NN06 94 aa4.48□□□□□ -1.69
USP28-205ENST00000537706 ZCCHC13Q8WW36 166 aaKnown RBP4.48□□□□□ -1.69
USP28-205ENST00000537706 C8orf17Q9NRJ1 99 aa4.48□□□□□ -1.69
USP28-205ENST00000537706 MP68P56378 58 aa4.46□□□□□ -1.69
USP28-205ENST00000537706 KMT2DO14686 5537 aa4.46□□□□□ -1.7
USP28-205ENST00000537706 IGHV6-1A0A0B4J1U7 121 aa4.46□□□□□ -1.7
USP28-205ENST00000537706 H3BPC8 53 aa4.46□□□□□ -1.7
USP28-205ENST00000537706 Q8N9P0 234 aaPredicted RBP4.46□□□□□ -1.7
USP28-205ENST00000537706 TP53AIP1Q9HCN2 124 aa4.44□□□□□ -1.7
USP28-205ENST00000537706 H0Y9P7 68 aa4.44□□□□□ -1.7
USP28-205ENST00000537706 SERP1Q9Y6X1 66 aa4.44□□□□□ -1.7
USP28-205ENST00000537706 TRAV22A0A0B4J277 110 aa4.43□□□□□ -1.7
USP28-205ENST00000537706 GPR98Q8WXG9 6306 aa4.43□□□□□ -1.7
USP28-205ENST00000537706 C8orf87E5RJ46 101 aa4.42□□□□□ -1.7
USP28-205ENST00000537706 MRPL34Q9BQ48 92 aaKnown RBP4.42□□□□□ -1.7
USP28-205ENST00000537706 MDN1Q9NU22 5596 aa4.42□□□□□ -1.7
USP28-205ENST00000537706 LINC00208Q96KT6 92 aa4.41□□□□□ -1.7
USP28-205ENST00000537706 NOTCH2NLQ7Z3S9 236 aa4.4□□□□□ -1.71
USP28-205ENST00000537706 C1orf64Q8NEQ6 169 aa4.39□□□□□ -1.71
USP28-205ENST00000537706 A8MUU9 505 aa4.38□□□□□ -1.71
USP28-205ENST00000537706 NDUFS5O43920 106 aa4.38□□□□□ -1.71
USP28-205ENST00000537706 SPRR2EP22531 72 aa4.38□□□□□ -1.71
USP28-205ENST00000537706 SPRR2BP35325 72 aa4.38□□□□□ -1.71
USP28-205ENST00000537706 SPRR2AP35326 72 aa4.38□□□□□ -1.71
USP28-205ENST00000537706 SPANXA2-OT1Q8N9U9 137 aa4.37□□□□□ -1.71
USP28-205ENST00000537706 CYP4F30PQ9H0H9 118 aa4.37□□□□□ -1.71
USP28-205ENST00000537706 MPLKIPQ8TAP9 179 aa4.36□□□□□ -1.71
USP28-205ENST00000537706 SVIPQ8NHG7 77 aa4.36□□□□□ -1.71
USP28-205ENST00000537706 HRES1P13985 223 aa4.35□□□□□ -1.71
USP28-205ENST00000537706 LINC00313P59037 77 aa4.35□□□□□ -1.71
USP28-205ENST00000537706 SMIM26A0A096LP01 95 aa4.34□□□□□ -1.71
USP28-205ENST00000537706 LOC100996750A0A140TA64 210 aa4.33□□□□□ -1.72
USP28-205ENST00000537706 LOC101927531A0A1B0GV80 90 aa4.33□□□□□ -1.72
USP28-205ENST00000537706 KRTAP16-1A8MUX0 517 aa4.33□□□□□ -1.72
USP28-205ENST00000537706 KRTAP4-6Q9BYQ5 205 aa4.33□□□□□ -1.72
USP28-205ENST00000537706 Q5W150 140 aa4.31□□□□□ -1.72
USP28-205ENST00000537706 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
USP28-205ENST00000537706 Q5VV11 94 aa4.27□□□□□ -1.73
USP28-205ENST00000537706 KRTAP10-5P60370 271 aa4.26□□□□□ -1.73
USP28-205ENST00000537706 SPRR2DP22532 72 aa4.25□□□□□ -1.73
USP28-205ENST00000537706 IGKV2-30P06310 120 aa4.25□□□□□ -1.73
USP28-205ENST00000537706 C4orf26Q17RF5 130 aa4.25□□□□□ -1.73
USP28-205ENST00000537706 COA5Q86WW8 74 aa4.23□□□□□ -1.73
USP28-205ENST00000537706 Q1T7F1 81 aa4.22□□□□□ -1.73
USP28-205ENST00000537706 DMAC1Q96GE9 116 aa4.2□□□□□ -1.74
USP28-205ENST00000537706 V9GYY9 64 aa4.2□□□□□ -1.74
USP28-205ENST00000537706 IGKV2D-30A0A075B6S6 120 aa4.19□□□□□ -1.74
USP28-205ENST00000537706 MT1BP07438 61 aa4.18□□□□□ -1.74
USP28-205ENST00000537706 C7orf65Q6ZTY9 151 aa4.18□□□□□ -1.74
USP28-205ENST00000537706 LCE1AQ5T7P2 110 aa4.17□□□□□ -1.74
USP28-205ENST00000537706 LCE3BQ5TA77 95 aa4.17□□□□□ -1.74
USP28-205ENST00000537706 ACYP2P14621 99 aa4.17□□□□□ -1.74
USP28-205ENST00000537706 SPINK7P58062 85 aa4.13□□□□□ -1.75
USP28-205ENST00000537706 PSPHP1O15172 72 aa4.12□□□□□ -1.75
USP28-205ENST00000537706 KRTAP19-8Q3LI54 63 aa4.11□□□□□ -1.75
USP28-205ENST00000537706 LINC01558Q9Y6Z2 57 aa4.11□□□□□ -1.75
USP28-205ENST00000537706 A8MUN3 132 aa4.11□□□□□ -1.75
USP28-205ENST00000537706 CHKB-CPT1BH3BT56 60 aa4.11□□□□□ -1.75
USP28-205ENST00000537706 KRTAP8-1Q8IUC2 63 aa4.1□□□□□ -1.75
USP28-205ENST00000537706 PRR15LQ9BU68 103 aa4.1□□□□□ -1.75
USP28-205ENST00000537706 H1FX-AS1Q4G0G2 97 aa4.08□□□□□ -1.76
USP28-205ENST00000537706 BRK1Q8WUW1 75 aa4.07□□□□□ -1.76
USP28-205ENST00000537706 PRO0628Q9UI54 55 aa4.07□□□□□ -1.76
USP28-205ENST00000537706 SPRR2GQ9BYE4 73 aa4.04□□□□□ -1.76
USP28-205ENST00000537706 SPTSSBQ8NFR3 76 aa4.01□□□□□ -1.77
USP28-205ENST00000537706 A6NED7 52 aa4□□□□□ -1.77
USP28-205ENST00000537706 KRTAP3-1Q9BYR8 98 aa4□□□□□ -1.77
USP28-205ENST00000537706 A0A1B0GU69 56 aa3.99□□□□□ -1.77
USP28-205ENST00000537706 KRTAP4-9Q9BYQ8 210 aa3.99□□□□□ -1.77
USP28-205ENST00000537706 PRO2289Q9P1D8 64 aa3.98□□□□□ -1.77
USP28-205ENST00000537706 CDC42SE1Q9NRR8 79 aa3.97□□□□□ -1.77
USP28-205ENST00000537706 LCA10Q71F78 164 aa3.95□□□□□ -1.78
USP28-205ENST00000537706 A8MU10 97 aa3.93□□□□□ -1.78
USP28-205ENST00000537706 SEC61GP60059 68 aa3.92□□□□□ -1.78
USP28-205ENST00000537706 UQCR11O14957 56 aa3.9□□□□□ -1.78
USP28-205ENST00000537706 SPATA8Q6RVD6 105 aa3.88□□□□□ -1.79
USP28-205ENST00000537706 S4R3F8 94 aa3.87□□□□□ -1.79
USP28-205ENST00000537706 MIR22HGQ0VDD5 57 aa3.87□□□□□ -1.79
USP28-205ENST00000537706 KRTAP12-2P59991 146 aa3.86□□□□□ -1.79
USP28-205ENST00000537706 CSAG1Q6PB30 78 aa3.86□□□□□ -1.79
USP28-205ENST00000537706 CRIPTQ9P021 101 aa3.85□□□□□ -1.79
USP28-205ENST00000537706 PMAIP1Q13794 54 aa3.85□□□□□ -1.79
USP28-205ENST00000537706 KRTAP5-10Q6L8G5 202 aa3.85□□□□□ -1.79
USP28-205ENST00000537706 DSTQ03001 7570 aaKnown RBP3.84□□□□□ -1.79
USP28-205ENST00000537706 LCE1DQ5T752 114 aa3.83□□□□□ -1.8
USP28-205ENST00000537706 A0A1B0GU33 70 aa3.82□□□□□ -1.8
USP28-205ENST00000537706 KRTAP5-7Q6L8G8 165 aa3.82□□□□□ -1.8
USP28-205ENST00000537706 SPRR5A0A1B0GTR4 108 aa3.8□□□□□ -1.8
USP28-205ENST00000537706 H0YAA0 97 aa3.8□□□□□ -1.8
USP28-205ENST00000537706 AHNAK2Q8IVF2 5795 aa3.8□□□□□ -1.8
USP28-205ENST00000537706 HMCN1Q96RW7 5635 aa3.78□□□□□ -1.8
USP28-205ENST00000537706 KRTAP4-8A0A0G2JLE6 195 aa3.78□□□□□ -1.8
USP28-205ENST00000537706 KRTAP4-8Q9BYQ9 185 aa3.78□□□□□ -1.8
USP28-205ENST00000537706 MT1XP80297 61 aa3.78□□□□□ -1.81
USP28-205ENST00000537706 KTN1-AS1Q86SY8 53 aa3.76□□□□□ -1.81
USP28-205ENST00000537706 PLAC4Q8WY50 150 aa3.76□□□□□ -1.81
USP28-205ENST00000537706 MT4P47944 62 aa3.74□□□□□ -1.81
USP28-205ENST00000537706 LCE4AQ5TA78 99 aa3.73□□□□□ -1.81
USP28-205ENST00000537706 P0C880 135 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms