RNA–Protein interactions for RNA: ENST00000517417.2

PCDHGA1-202, Transcript of protocadherin gamma subfamily A, 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHGA1, Length 4,604 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1-202ENST00000517417 XP32Q5T750 250 aa5.73□□□□□ -1.49
PCDHGA1-202ENST00000517417 LRP1BQ9NZR2 4599 aa5.72□□□□□ -1.49
PCDHGA1-202ENST00000517417 FAT2Q9NYQ8 4349 aa5.71□□□□□ -1.5
PCDHGA1-202ENST00000517417 PKHD1P08F94 4074 aa5.7□□□□□ -1.5
PCDHGA1-202ENST00000517417 ALMS1Q8TCU4 4167 aa5.68□□□□□ -1.5
PCDHGA1-202ENST00000517417 PKD1P98161 4303 aa5.68□□□□□ -1.5
PCDHGA1-202ENST00000517417 SACSQ9NZJ4 4579 aa5.66□□□□□ -1.5
PCDHGA1-202ENST00000517417 VPS13BQ7Z7G8 4022 aa5.65□□□□□ -1.5
PCDHGA1-202ENST00000517417 KRTAP3-1Q9BYR8 98 aa5.62□□□□□ -1.51
PCDHGA1-202ENST00000517417 KMT2CQ8NEZ4 4911 aaKnown RBP5.58□□□□□ -1.52
PCDHGA1-202ENST00000517417 FAT1Q14517 4588 aa5.57□□□□□ -1.52
PCDHGA1-202ENST00000517417 C10orf95Q9H7T3 257 aa5.56□□□□□ -1.52
PCDHGA1-202ENST00000517417 DYNC1H1Q14204 4646 aaKnown RBP5.55□□□□□ -1.52
PCDHGA1-202ENST00000517417 TPRXLQ17RH7 258 aa5.55□□□□□ -1.52
PCDHGA1-202ENST00000517417 TNP1P09430 55 aa5.53□□□□□ -1.52
PCDHGA1-202ENST00000517417 P0C880 135 aa5.53□□□□□ -1.52
PCDHGA1-202ENST00000517417 KRTAP10-8P60410 259 aa5.5□□□□□ -1.53
PCDHGA1-202ENST00000517417 RYR2Q92736 4967 aa5.48□□□□□ -1.53
PCDHGA1-202ENST00000517417 APOBP04114 4563 aaKnown RBP5.44□□□□□ -1.54
PCDHGA1-202ENST00000517417 KRTAP13-4Q3LI77 160 aa5.42□□□□□ -1.54
PCDHGA1-202ENST00000517417 KRTAP10-6P60371 365 aaPredicted RBP5.41□□□□□ -1.54
PCDHGA1-202ENST00000517417 KRTAP10-10P60014 251 aa5.4□□□□□ -1.54
PCDHGA1-202ENST00000517417 KRTAP12-2P59991 146 aa5.38□□□□□ -1.55
PCDHGA1-202ENST00000517417 RYR3Q15413 4870 aa5.38□□□□□ -1.55
PCDHGA1-202ENST00000517417 KRTAP10-4P60372 401 aaPredicted RBP5.37□□□□□ -1.55
PCDHGA1-202ENST00000517417 LRP1Q07954 4544 aaKnown RBP5.36□□□□□ -1.55
PCDHGA1-202ENST00000517417 KRTAP3-3Q9BYR6 98 aa5.32□□□□□ -1.56
PCDHGA1-202ENST00000517417 PP632Q6XCG6 107 aa5.32□□□□□ -1.56
PCDHGA1-202ENST00000517417 KRTAP3-2Q9BYR7 98 aa5.3□□□□□ -1.56
PCDHGA1-202ENST00000517417 KRTAP12-1P59990 96 aa5.3□□□□□ -1.56
PCDHGA1-202ENST00000517417 KIAA1109Q2LD37 5005 aa5.29□□□□□ -1.56
PCDHGA1-202ENST00000517417 HSPG2P98160 4391 aa5.29□□□□□ -1.56
PCDHGA1-202ENST00000517417 PKHD1L1Q86WI1 4243 aa5.27□□□□□ -1.57
PCDHGA1-202ENST00000517417 MYCBP2O75592 4640 aa5.26□□□□□ -1.57
PCDHGA1-202ENST00000517417 KRTAP17-1Q9BYP8 105 aa5.25□□□□□ -1.57
PCDHGA1-202ENST00000517417 RYR1P21817 5038 aa5.22□□□□□ -1.57
PCDHGA1-202ENST00000517417 EPPK1P58107 5090 aaKnown RBP5.21□□□□□ -1.58
PCDHGA1-202ENST00000517417 TNXBP22105 4242 aa5.19□□□□□ -1.58
PCDHGA1-202ENST00000517417 MT1HL1P0DM35 61 aa5.17□□□□□ -1.58
PCDHGA1-202ENST00000517417 KRTAP15-1Q3LI76 137 aa5.16□□□□□ -1.58
PCDHGA1-202ENST00000517417 FAT3Q8TDW7 4589 aa5.15□□□□□ -1.58
PCDHGA1-202ENST00000517417 PRO2289Q9P1D8 64 aa5.15□□□□□ -1.59
PCDHGA1-202ENST00000517417 KRTAP4-5Q9BYR2 181 aa5.09□□□□□ -1.59
PCDHGA1-202ENST00000517417 ABCA13Q86UQ4 5058 aa5.01□□□□□ -1.61
PCDHGA1-202ENST00000517417 LRP2P98164 4655 aa5□□□□□ -1.61
PCDHGA1-202ENST00000517417 LPAP08519 4548 aa5□□□□□ -1.61
PCDHGA1-202ENST00000517417 HERC2O95714 4834 aa4.92□□□□□ -1.62
PCDHGA1-202ENST00000517417 LORP23490 312 aaPredicted RBP4.89□□□□□ -1.63
PCDHGA1-202ENST00000517417 BIRC6Q9NR09 4857 aa4.79□□□□□ -1.64
PCDHGA1-202ENST00000517417 MUC2Q02817 5179 aa4.77□□□□□ -1.65
PCDHGA1-202ENST00000517417 HERC1Q15751 4861 aa4.75□□□□□ -1.65
PCDHGA1-202ENST00000517417 PCLOQ9Y6V0 5065 aa4.72□□□□□ -1.65
PCDHGA1-202ENST00000517417 KRTAP4-1Q9BYQ7 146 aa4.72□□□□□ -1.65
PCDHGA1-202ENST00000517417 KRTAP10-12P60413 245 aa4.66□□□□□ -1.66
PCDHGA1-202ENST00000517417 MUC17Q685J3 4493 aa4.65□□□□□ -1.66
PCDHGA1-202ENST00000517417 INE1O15225 51 aa4.61□□□□□ -1.67
PCDHGA1-202ENST00000517417 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
PCDHGA1-202ENST00000517417 CRCT1Q9UGL9 99 aa4.57□□□□□ -1.68
PCDHGA1-202ENST00000517417 HMCN2Q8NDA2 5059 aa4.56□□□□□ -1.68
PCDHGA1-202ENST00000517417 KRTAP12-3P60328 96 aa4.56□□□□□ -1.68
PCDHGA1-202ENST00000517417 LCE3AQ5TA76 89 aa4.55□□□□□ -1.68
PCDHGA1-202ENST00000517417 RNF213Q63HN8 5207 aa4.54□□□□□ -1.68
PCDHGA1-202ENST00000517417 FAT4Q6V0I7 4981 aa4.53□□□□□ -1.68
PCDHGA1-202ENST00000517417 KRTAP19-2Q3LHN2 52 aa4.5□□□□□ -1.69
PCDHGA1-202ENST00000517417 UBR4Q5T4S7 5183 aa4.5□□□□□ -1.69
PCDHGA1-202ENST00000517417 FLGP20930 4061 aaPredicted RBP4.45□□□□□ -1.7
PCDHGA1-202ENST00000517417 MT1HP80294 61 aa4.44□□□□□ -1.7
PCDHGA1-202ENST00000517417 MT2AP02795 61 aa4.36□□□□□ -1.71
PCDHGA1-202ENST00000517417 SPRR2GQ9BYE4 73 aa4.36□□□□□ -1.71
PCDHGA1-202ENST00000517417 LCE2CQ5TA81 110 aa4.35□□□□□ -1.71
PCDHGA1-202ENST00000517417 MT1FP04733 61 aa4.3□□□□□ -1.72
PCDHGA1-202ENST00000517417 KRTAP8-1Q8IUC2 63 aa4.3□□□□□ -1.72
PCDHGA1-202ENST00000517417 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
PCDHGA1-202ENST00000517417 KRTAP19-1Q8IUB9 90 aa4.26□□□□□ -1.73
PCDHGA1-202ENST00000517417 KRTAP10-5P60370 271 aa4.19□□□□□ -1.74
PCDHGA1-202ENST00000517417 KRTAP9-8Q9BYQ0 159 aa4.13□□□□□ -1.75
PCDHGA1-202ENST00000517417 KRTAP19-5Q3LI72 72 aa4.11□□□□□ -1.75
PCDHGA1-202ENST00000517417 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
PCDHGA1-202ENST00000517417 MT1XP80297 61 aa4.07□□□□□ -1.76
PCDHGA1-202ENST00000517417 KRTAP10-7P60409 375 aaPredicted RBP4.06□□□□□ -1.76
PCDHGA1-202ENST00000517417 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
PCDHGA1-202ENST00000517417 SPRR2FQ96RM1 72 aa4.05□□□□□ -1.76
PCDHGA1-202ENST00000517417 MT1BP07438 61 aa4.04□□□□□ -1.76
PCDHGA1-202ENST00000517417 LCE3CQ5T5A8 94 aa3.99□□□□□ -1.77
PCDHGA1-202ENST00000517417 USH2AO75445 5202 aa3.99□□□□□ -1.77
PCDHGA1-202ENST00000517417 KRTAP9-2Q9BYQ4 174 aa3.98□□□□□ -1.77
PCDHGA1-202ENST00000517417 LCE2AQ5TA79 106 aaPredicted RBP3.97□□□□□ -1.77
PCDHGA1-202ENST00000517417 LCE2DQ5TA82 110 aaPredicted RBP3.96□□□□□ -1.78
PCDHGA1-202ENST00000517417 KRTAP9-3Q9BYQ3 159 aa3.96□□□□□ -1.78
PCDHGA1-202ENST00000517417 FSIP2Q5CZC0 6907 aa3.94□□□□□ -1.78
PCDHGA1-202ENST00000517417 KRTAP4-8A0A0G2JLE6 195 aa3.89□□□□□ -1.79
PCDHGA1-202ENST00000517417 KRTAP4-8Q9BYQ9 185 aa3.89□□□□□ -1.79
PCDHGA1-202ENST00000517417 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
PCDHGA1-202ENST00000517417 LCE2BO14633 110 aa3.87□□□□□ -1.79
PCDHGA1-202ENST00000517417 OBSCNQ5VST9 7968 aa3.86□□□□□ -1.79
PCDHGA1-202ENST00000517417 KRTAP19-4Q3LI73 84 aa3.85□□□□□ -1.79
PCDHGA1-202ENST00000517417 KMT2DO14686 5537 aa3.81□□□□□ -1.8
PCDHGA1-202ENST00000517417 MT1GP13640 62 aa3.75□□□□□ -1.81
PCDHGA1-202ENST00000517417 KRTAP19-6Q3LI70 58 aa3.75□□□□□ -1.81
PCDHGA1-202ENST00000517417 SPRR2EP22531 72 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms