RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RYR1P21817 5038 aa7.64□□□□□ -1.19
NUP54-217ENST00000514987 DMBT1Q9UGM3 2413 aaPredicted RBP7.64□□□□□ -1.19
NUP54-217ENST00000514987 LRP1Q07954 4544 aaKnown RBP7.63□□□□□ -1.19
NUP54-217ENST00000514987 H0YAA0 97 aa7.62□□□□□ -1.19
NUP54-217ENST00000514987 TPRXLQ17RH7 258 aa7.62□□□□□ -1.19
NUP54-217ENST00000514987 S4R3F8 94 aa7.59□□□□□ -1.19
NUP54-217ENST00000514987 RBM12B-AS1Q9P1G2 102 aa7.56□□□□□ -1.2
NUP54-217ENST00000514987 RYR3Q15413 4870 aa7.54□□□□□ -1.2
NUP54-217ENST00000514987 K7ERS5 55 aa7.5□□□□□ -1.21
NUP54-217ENST00000514987 KRTAP10-6P60371 365 aaPredicted RBP7.46□□□□□ -1.22
NUP54-217ENST00000514987 KIAA1109Q2LD37 5005 aa7.45□□□□□ -1.22
NUP54-217ENST00000514987 PRAC1Q96KF2 57 aa7.43□□□□□ -1.22
NUP54-217ENST00000514987 ADM2Q7Z4H4 148 aa7.42□□□□□ -1.22
NUP54-217ENST00000514987 CSAG1Q6PB30 78 aa7.38□□□□□ -1.23
NUP54-217ENST00000514987 SEC61BP60468 96 aaKnown RBP7.37□□□□□ -1.23
NUP54-217ENST00000514987 MYCBP2O75592 4640 aa7.37□□□□□ -1.23
NUP54-217ENST00000514987 KRTAP4-5Q9BYR2 181 aa7.36□□□□□ -1.23
NUP54-217ENST00000514987 J3QL48 77 aa7.31□□□□□ -1.24
NUP54-217ENST00000514987 P0C880 135 aa7.3□□□□□ -1.24
NUP54-217ENST00000514987 KRTAP13-4Q3LI77 160 aa7.29□□□□□ -1.24
NUP54-217ENST00000514987 EPPK1P58107 5090 aaKnown RBP7.26□□□□□ -1.25
NUP54-217ENST00000514987 LINC01554Q52M75 96 aa7.25□□□□□ -1.25
NUP54-217ENST00000514987 A0A0D9SG42 100 aa7.24□□□□□ -1.25
NUP54-217ENST00000514987 M0QZ58 72 aa7.24□□□□□ -1.25
NUP54-217ENST00000514987 ROMO1P60602 79 aa7.22□□□□□ -1.25
NUP54-217ENST00000514987 KRTAP25-1Q3LHN0 102 aa7.2□□□□□ -1.26
NUP54-217ENST00000514987 LRP2P98164 4655 aa7.18□□□□□ -1.26
NUP54-217ENST00000514987 LPAP08519 4548 aa7.08□□□□□ -1.28
NUP54-217ENST00000514987 KRTAP12-1P59990 96 aa7.08□□□□□ -1.28
NUP54-217ENST00000514987 KRTAP12-2P59991 146 aa7.08□□□□□ -1.28
NUP54-217ENST00000514987 KRTAP4-1Q9BYQ7 146 aa7.07□□□□□ -1.28
NUP54-217ENST00000514987 ABCA13Q86UQ4 5058 aa7.06□□□□□ -1.28
NUP54-217ENST00000514987 SPINT4Q6UDR6 99 aa7.05□□□□□ -1.28
NUP54-217ENST00000514987 R4GN34 69 aa7.03□□□□□ -1.28
NUP54-217ENST00000514987 KRTAP19-2Q3LHN2 52 aa6.99□□□□□ -1.29
NUP54-217ENST00000514987 MUC17Q685J3 4493 aa6.97□□□□□ -1.29
NUP54-217ENST00000514987 CRIPTQ9P021 101 aa6.97□□□□□ -1.29
NUP54-217ENST00000514987 HERC2O95714 4834 aa6.93□□□□□ -1.3
NUP54-217ENST00000514987 BIRC6Q9NR09 4857 aa6.87□□□□□ -1.31
NUP54-217ENST00000514987 LORP23490 312 aaPredicted RBP6.82□□□□□ -1.32
NUP54-217ENST00000514987 C10orf95Q9H7T3 257 aa6.78□□□□□ -1.32
NUP54-217ENST00000514987 LCE2BO14633 110 aa6.78□□□□□ -1.32
NUP54-217ENST00000514987 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
NUP54-217ENST00000514987 CAMK2N1Q7Z7J9 78 aa6.65□□□□□ -1.34
NUP54-217ENST00000514987 LCE2CQ5TA81 110 aa6.63□□□□□ -1.35
NUP54-217ENST00000514987 HERC1Q15751 4861 aa6.57□□□□□ -1.36
NUP54-217ENST00000514987 HMCN2Q8NDA2 5059 aa6.56□□□□□ -1.36
NUP54-217ENST00000514987 PP632Q6XCG6 107 aa6.55□□□□□ -1.36
NUP54-217ENST00000514987 PCLOQ9Y6V0 5065 aa6.51□□□□□ -1.37
NUP54-217ENST00000514987 LOC100996750A0A140TA64 210 aa6.5□□□□□ -1.37
NUP54-217ENST00000514987 KRTAP4-6Q9BYQ5 205 aa6.5□□□□□ -1.37
NUP54-217ENST00000514987 M0R2T5 61 aa6.49□□□□□ -1.37
NUP54-217ENST00000514987 KRTAP15-1Q3LI76 137 aa6.49□□□□□ -1.37
NUP54-217ENST00000514987 SPRR2GQ9BYE4 73 aa6.49□□□□□ -1.37
NUP54-217ENST00000514987 MT1HP80294 61 aa6.47□□□□□ -1.37
NUP54-217ENST00000514987 MUC2Q02817 5179 aa6.46□□□□□ -1.38
NUP54-217ENST00000514987 TNP1P09430 55 aa6.43□□□□□ -1.38
NUP54-217ENST00000514987 PLAC4Q8WY50 150 aa6.43□□□□□ -1.38
NUP54-217ENST00000514987 KRTAP23-1A1A580 65 aa6.42□□□□□ -1.38
NUP54-217ENST00000514987 LCE2AQ5TA79 106 aaPredicted RBP6.39□□□□□ -1.39
NUP54-217ENST00000514987 KRTAP19-1Q8IUB9 90 aa6.39□□□□□ -1.39
NUP54-217ENST00000514987 MT2AP02795 61 aa6.34□□□□□ -1.39
NUP54-217ENST00000514987 KRTAP10-10P60014 251 aa6.33□□□□□ -1.4
NUP54-217ENST00000514987 MT1FP04733 61 aa6.3□□□□□ -1.4
NUP54-217ENST00000514987 KRTAP9-8Q9BYQ0 159 aa6.3□□□□□ -1.4
NUP54-217ENST00000514987 H3BS24 57 aa6.28□□□□□ -1.4
NUP54-217ENST00000514987 KRTAP19-8Q3LI54 63 aa6.24□□□□□ -1.41
NUP54-217ENST00000514987 RNF213Q63HN8 5207 aa6.23□□□□□ -1.41
NUP54-217ENST00000514987 NDUFAF8A1L188 74 aa6.21□□□□□ -1.42
NUP54-217ENST00000514987 FAT4Q6V0I7 4981 aa6.17□□□□□ -1.42
NUP54-217ENST00000514987 UBR4Q5T4S7 5183 aa6.13□□□□□ -1.43
NUP54-217ENST00000514987 MT1BP07438 61 aa6.08□□□□□ -1.44
NUP54-217ENST00000514987 LUZP6Q538Z0 58 aa6.06□□□□□ -1.44
NUP54-217ENST00000514987 KRTAP9-3Q9BYQ3 159 aa6.06□□□□□ -1.44
NUP54-217ENST00000514987 KRTAP10-5P60370 271 aa6.01□□□□□ -1.45
NUP54-217ENST00000514987 MT1XP80297 61 aa6□□□□□ -1.45
NUP54-217ENST00000514987 LCE3AQ5TA76 89 aa6□□□□□ -1.45
NUP54-217ENST00000514987 SPRR5A0A1B0GTR4 108 aa5.96□□□□□ -1.46
NUP54-217ENST00000514987 PRO2289Q9P1D8 64 aa5.96□□□□□ -1.46
NUP54-217ENST00000514987 KRTAP8-1Q8IUC2 63 aa5.94□□□□□ -1.46
NUP54-217ENST00000514987 KRTAP10-12P60413 245 aa5.88□□□□□ -1.47
NUP54-217ENST00000514987 KRTAP4-8Q9BYQ9 185 aa5.84□□□□□ -1.47
NUP54-217ENST00000514987 KRTAP12-3P60328 96 aa5.78□□□□□ -1.48
NUP54-217ENST00000514987 KRTAP10-7P60409 375 aaPredicted RBP5.77□□□□□ -1.49
NUP54-217ENST00000514987 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.76□□□□□ -1.49
NUP54-217ENST00000514987 KRTAP9-2Q9BYQ4 174 aa5.75□□□□□ -1.49
NUP54-217ENST00000514987 KRTAP9-6A0A140TA67 174 aa5.72□□□□□ -1.49
NUP54-217ENST00000514987 A0A0A0MQY5 61 aa5.64□□□□□ -1.51
NUP54-217ENST00000514987 KRTAP19-5Q3LI72 72 aa5.54□□□□□ -1.52
NUP54-217ENST00000514987 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
NUP54-217ENST00000514987 KRTAP4-12Q9BQ66 201 aa5.46□□□□□ -1.53
NUP54-217ENST00000514987 KRTAP9-9Q9BYP9 154 aa5.46□□□□□ -1.53
NUP54-217ENST00000514987 KRTAP9-4Q9BYQ2 154 aa5.46□□□□□ -1.53
NUP54-217ENST00000514987 KRTAP19-4Q3LI73 84 aa5.44□□□□□ -1.54
NUP54-217ENST00000514987 LCE3CQ5T5A8 94 aa5.44□□□□□ -1.54
NUP54-217ENST00000514987 KRTAP4-8A0A0G2JLE6 195 aa5.42□□□□□ -1.54
NUP54-217ENST00000514987 KRTAP19-6Q3LI70 58 aa5.35□□□□□ -1.55
NUP54-217ENST00000514987 USH2AO75445 5202 aa5.35□□□□□ -1.55
NUP54-217ENST00000514987 KRTAP19-7Q3SYF9 63 aa5.34□□□□□ -1.55
NUP54-217ENST00000514987 KRTAP4-7Q9BYR0 210 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms