RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 KIAA1109Q2LD37 5005 aa3.68□□□□□ -1.82
NIPBL-208ENST00000514335 DMBT1Q9UGM3 2413 aaPredicted RBP3.67□□□□□ -1.82
NIPBL-208ENST00000514335 UBR4Q5T4S7 5183 aa3.67□□□□□ -1.82
NIPBL-208ENST00000514335 ABCA13Q86UQ4 5058 aa3.67□□□□□ -1.82
NIPBL-208ENST00000514335 INE1O15225 51 aa3.66□□□□□ -1.82
NIPBL-208ENST00000514335 SPRR1AP35321 89 aa3.66□□□□□ -1.82
NIPBL-208ENST00000514335 UBE2DNLQ8IWF7 75 aa3.66□□□□□ -1.82
NIPBL-208ENST00000514335 COX6B2Q6YFQ2 88 aa3.64□□□□□ -1.83
NIPBL-208ENST00000514335 IGKV2-30P06310 120 aa3.63□□□□□ -1.83
NIPBL-208ENST00000514335 C10orf99Q6UWK7 81 aa3.63□□□□□ -1.83
NIPBL-208ENST00000514335 NOP10Q9NPE3 64 aaKnown RBP3.63□□□□□ -1.83
NIPBL-208ENST00000514335 IGKV2D-30A0A075B6S6 120 aa3.6□□□□□ -1.83
NIPBL-208ENST00000514335 STARD9Q9P2P6 4700 aa3.6□□□□□ -1.83
NIPBL-208ENST00000514335 LOC100996750A0A140TA64 210 aa3.6□□□□□ -1.83
NIPBL-208ENST00000514335 KRTAP4-6Q9BYQ5 205 aa3.6□□□□□ -1.83
NIPBL-208ENST00000514335 A0A096LPF7 62 aa3.59□□□□□ -1.84
NIPBL-208ENST00000514335 A0A096LNI7 61 aa3.57□□□□□ -1.84
NIPBL-208ENST00000514335 KRTAP19-4Q3LI73 84 aa3.57□□□□□ -1.84
NIPBL-208ENST00000514335 PKD1P98161 4303 aa3.57□□□□□ -1.84
NIPBL-208ENST00000514335 A0A0D9SG42 100 aa3.56□□□□□ -1.84
NIPBL-208ENST00000514335 SPART-AS1P0CW21 52 aa3.56□□□□□ -1.84
NIPBL-208ENST00000514335 DNAH8Q96JB1 4490 aa3.56□□□□□ -1.84
NIPBL-208ENST00000514335 HERC1Q15751 4861 aa3.55□□□□□ -1.84
NIPBL-208ENST00000514335 KRTAP12-2P59991 146 aa3.55□□□□□ -1.84
NIPBL-208ENST00000514335 KRTAP9-2Q9BYQ4 174 aa3.55□□□□□ -1.84
NIPBL-208ENST00000514335 KRTAP7-1Q8IUC3 87 aa3.54□□□□□ -1.84
NIPBL-208ENST00000514335 FAT1Q14517 4588 aa3.53□□□□□ -1.84
NIPBL-208ENST00000514335 KRTAP10-2P60368 255 aa3.53□□□□□ -1.84
NIPBL-208ENST00000514335 TNXBP22105 4242 aa3.53□□□□□ -1.85
NIPBL-208ENST00000514335 HSPG2P98160 4391 aa3.52□□□□□ -1.85
NIPBL-208ENST00000514335 S4R3F8 94 aa3.51□□□□□ -1.85
NIPBL-208ENST00000514335 FAT3Q8TDW7 4589 aa3.5□□□□□ -1.85
NIPBL-208ENST00000514335 SPRR1BP22528 89 aa3.5□□□□□ -1.85
NIPBL-208ENST00000514335 KRTAP13-4Q3LI77 160 aa3.5□□□□□ -1.85
NIPBL-208ENST00000514335 APOBP04114 4563 aaKnown RBP3.49□□□□□ -1.85
NIPBL-208ENST00000514335 KRTAP10-4P60372 401 aaPredicted RBP3.48□□□□□ -1.85
NIPBL-208ENST00000514335 Q5VSD8 79 aa3.47□□□□□ -1.85
NIPBL-208ENST00000514335 DEFB135Q30KP9 77 aa3.44□□□□□ -1.86
NIPBL-208ENST00000514335 DNAH5Q8TE73 4624 aa3.43□□□□□ -1.86
NIPBL-208ENST00000514335 LCE4AQ5TA78 99 aa3.42□□□□□ -1.86
NIPBL-208ENST00000514335 SPINK6Q6UWN8 80 aa3.42□□□□□ -1.86
NIPBL-208ENST00000514335 LINC01556Q5JQF7 62 aa3.41□□□□□ -1.86
NIPBL-208ENST00000514335 PP632Q6XCG6 107 aa3.41□□□□□ -1.86
NIPBL-208ENST00000514335 PRO0255Q9UI72 69 aa3.41□□□□□ -1.86
NIPBL-208ENST00000514335 MUC17Q685J3 4493 aa3.37□□□□□ -1.87
NIPBL-208ENST00000514335 MYCBP2O75592 4640 aa3.36□□□□□ -1.87
NIPBL-208ENST00000514335 KRTAP10-6P60371 365 aaPredicted RBP3.36□□□□□ -1.87
NIPBL-208ENST00000514335 SPRR5A0A1B0GTR4 108 aa3.36□□□□□ -1.87
NIPBL-208ENST00000514335 MT1HL1P0DM35 61 aa3.35□□□□□ -1.87
NIPBL-208ENST00000514335 KRTAP12-1P59990 96 aa3.34□□□□□ -1.87
NIPBL-208ENST00000514335 HMCN2Q8NDA2 5059 aa3.34□□□□□ -1.87
NIPBL-208ENST00000514335 KRTAP10-1P60331 282 aa3.33□□□□□ -1.88
NIPBL-208ENST00000514335 CRCT1Q9UGL9 99 aa3.33□□□□□ -1.88
NIPBL-208ENST00000514335 KRTAP13-2Q52LG2 175 aa3.31□□□□□ -1.88
NIPBL-208ENST00000514335 KRTAP4-8Q9BYQ9 185 aa3.3□□□□□ -1.88
NIPBL-208ENST00000514335 KRTAP9-7A8MTY7 169 aa3.3□□□□□ -1.88
NIPBL-208ENST00000514335 RNF213Q63HN8 5207 aa3.28□□□□□ -1.88
NIPBL-208ENST00000514335 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
NIPBL-208ENST00000514335 KRTAP1-5Q9BYS1 174 aa3.27□□□□□ -1.89
NIPBL-208ENST00000514335 KRTAP9-4Q9BYQ2 154 aa3.24□□□□□ -1.89
NIPBL-208ENST00000514335 KRTAP4-12Q9BQ66 201 aa3.22□□□□□ -1.89
NIPBL-208ENST00000514335 FAT4Q6V0I7 4981 aa3.22□□□□□ -1.89
NIPBL-208ENST00000514335 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
NIPBL-208ENST00000514335 KRTAP19-1Q8IUB9 90 aa3.21□□□□□ -1.9
NIPBL-208ENST00000514335 RPS29P62273 56 aaKnown RBP3.2□□□□□ -1.9
NIPBL-208ENST00000514335 SMR3BP02814 79 aaPredicted RBP3.2□□□□□ -1.9
NIPBL-208ENST00000514335 DEFB4AO15263 64 aa3.19□□□□□ -1.9
NIPBL-208ENST00000514335 HTN3P15516 51 aa3.18□□□□□ -1.9
NIPBL-208ENST00000514335 MUC2Q02817 5179 aa3.18□□□□□ -1.9
NIPBL-208ENST00000514335 KRTAP13-1Q8IUC0 172 aa3.17□□□□□ -1.9
NIPBL-208ENST00000514335 LCE3BQ5TA77 95 aa3.13□□□□□ -1.91
NIPBL-208ENST00000514335 KRTAP2-2Q9BYT5 123 aa3.12□□□□□ -1.91
NIPBL-208ENST00000514335 LRP2P98164 4655 aa3.09□□□□□ -1.91
NIPBL-208ENST00000514335 LCE5AQ5TCM9 118 aa3.05□□□□□ -1.92
NIPBL-208ENST00000514335 KRTAP4-8A0A0G2JLE6 195 aa3.03□□□□□ -1.92
NIPBL-208ENST00000514335 SSPOA2VEC9 5147 aa3.03□□□□□ -1.92
NIPBL-208ENST00000514335 LRP1Q07954 4544 aaKnown RBP3.02□□□□□ -1.93
NIPBL-208ENST00000514335 KRTAP9-3Q9BYQ3 159 aa3.02□□□□□ -1.93
NIPBL-208ENST00000514335 KRTAP1-4P0C5Y4 121 aa3□□□□□ -1.93
NIPBL-208ENST00000514335 KRTAP10-10P60014 251 aa2.99□□□□□ -1.93
NIPBL-208ENST00000514335 M0QZ58 72 aa2.98□□□□□ -1.93
NIPBL-208ENST00000514335 LCE1DQ5T752 114 aa2.96□□□□□ -1.94
NIPBL-208ENST00000514335 KRTAP6-3Q3LI67 103 aa2.95□□□□□ -1.94
NIPBL-208ENST00000514335 FSIP2Q5CZC0 6907 aa2.92□□□□□ -1.94
NIPBL-208ENST00000514335 LCE1AQ5T7P2 110 aa2.92□□□□□ -1.94
NIPBL-208ENST00000514335 KRTAP4-7Q9BYR0 210 aa2.92□□□□□ -1.94
NIPBL-208ENST00000514335 LCE1EQ5T753 118 aa2.9□□□□□ -1.94
NIPBL-208ENST00000514335 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
NIPBL-208ENST00000514335 KRTAP19-2Q3LHN2 52 aa2.89□□□□□ -1.95
NIPBL-208ENST00000514335 KRTAP20-1Q3LI63 56 aa2.89□□□□□ -1.95
NIPBL-208ENST00000514335 KRTAP4-9Q9BYQ8 210 aa2.89□□□□□ -1.95
NIPBL-208ENST00000514335 KRTAP9-8Q9BYQ0 159 aa2.87□□□□□ -1.95
NIPBL-208ENST00000514335 MT1HP80294 61 aa2.84□□□□□ -1.95
NIPBL-208ENST00000514335 KRTAP19-6Q3LI70 58 aa2.83□□□□□ -1.96
NIPBL-208ENST00000514335 LPAP08519 4548 aa2.82□□□□□ -1.96
NIPBL-208ENST00000514335 KRTAP4-2Q9BYR5 136 aa2.82□□□□□ -1.96
NIPBL-208ENST00000514335 C9orf92A6NGG3 77 aa2.81□□□□□ -1.96
NIPBL-208ENST00000514335 KRTAP5-3Q6L8H2 238 aa2.79□□□□□ -1.96
NIPBL-208ENST00000514335 KRTAP4-11Q9BYQ6 195 aa2.75□□□□□ -1.97
NIPBL-208ENST00000514335 KRTAP2-3P0C7H8 128 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms