RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 TRAV22A0A0B4J277 110 aa5□□□□□ -1.61
LIMCH1-214ENST00000512228 SPRR2GQ9BYE4 73 aa5□□□□□ -1.61
LIMCH1-214ENST00000512228 ATOX1O00244 68 aa4.99□□□□□ -1.61
LIMCH1-214ENST00000512228 S4R3F8 94 aa4.99□□□□□ -1.61
LIMCH1-214ENST00000512228 NEBP20929 6669 aa4.99□□□□□ -1.61
LIMCH1-214ENST00000512228 FAM236AA0A1B0GUQ0 79 aa4.98□□□□□ -1.61
LIMCH1-214ENST00000512228 FAM236BA0A1B0GV22 79 aa4.98□□□□□ -1.61
LIMCH1-214ENST00000512228 A6NN06 94 aa4.98□□□□□ -1.61
LIMCH1-214ENST00000512228 SCGB1A1P11684 91 aa4.97□□□□□ -1.61
LIMCH1-214ENST00000512228 CSAG1Q6PB30 78 aa4.97□□□□□ -1.61
LIMCH1-214ENST00000512228 LOC101927531A0A1B0GV80 90 aa4.96□□□□□ -1.62
LIMCH1-214ENST00000512228 MT-ATP8P03928 68 aa4.95□□□□□ -1.62
LIMCH1-214ENST00000512228 Q5VV11 94 aa4.95□□□□□ -1.62
LIMCH1-214ENST00000512228 KRTAP10-5P60370 271 aa4.94□□□□□ -1.62
LIMCH1-214ENST00000512228 OCR1Q9BZK8 76 aa4.94□□□□□ -1.62
LIMCH1-214ENST00000512228 H0Y9P7 68 aa4.93□□□□□ -1.62
LIMCH1-214ENST00000512228 MP68P56378 58 aa4.93□□□□□ -1.62
LIMCH1-214ENST00000512228 SMIM20Q8N5G0 67 aa4.93□□□□□ -1.62
LIMCH1-214ENST00000512228 CYP4F30PQ9H0H9 118 aa4.92□□□□□ -1.62
LIMCH1-214ENST00000512228 H3BPC8 53 aa4.91□□□□□ -1.62
LIMCH1-214ENST00000512228 KLKP1Q107X0 134 aa4.91□□□□□ -1.62
LIMCH1-214ENST00000512228 MUC12Q9UKN1 5478 aa4.89□□□□□ -1.63
LIMCH1-214ENST00000512228 LINC00208Q96KT6 92 aa4.87□□□□□ -1.63
LIMCH1-214ENST00000512228 TRAV7A0A075B6U4 112 aa4.85□□□□□ -1.63
LIMCH1-214ENST00000512228 KRTAP5-9P26371 169 aa4.85□□□□□ -1.63
LIMCH1-214ENST00000512228 A8MUN3 132 aa4.81□□□□□ -1.64
LIMCH1-214ENST00000512228 KRTAP20-1Q3LI63 56 aa4.78□□□□□ -1.64
LIMCH1-214ENST00000512228 SERP2Q8N6R1 65 aa4.77□□□□□ -1.65
LIMCH1-214ENST00000512228 CRIPTQ9P021 101 aa4.77□□□□□ -1.65
LIMCH1-214ENST00000512228 KMT2DO14686 5537 aa4.74□□□□□ -1.65
LIMCH1-214ENST00000512228 MT1XP80297 61 aa4.73□□□□□ -1.65
LIMCH1-214ENST00000512228 ADM2Q7Z4H4 148 aa4.72□□□□□ -1.65
LIMCH1-214ENST00000512228 H0YAA0 97 aa4.71□□□□□ -1.66
LIMCH1-214ENST00000512228 NDUFC1O43677 76 aa4.71□□□□□ -1.66
LIMCH1-214ENST00000512228 C20orf197Q8N268 126 aa4.7□□□□□ -1.66
LIMCH1-214ENST00000512228 DMAC1Q96GE9 116 aa4.7□□□□□ -1.66
LIMCH1-214ENST00000512228 COX7CP15954 63 aa4.69□□□□□ -1.66
LIMCH1-214ENST00000512228 SNURFQ9Y675 71 aa4.68□□□□□ -1.66
LIMCH1-214ENST00000512228 ACYP2P14621 99 aa4.66□□□□□ -1.66
LIMCH1-214ENST00000512228 SPANXA2-OT1Q8N9U9 137 aa4.66□□□□□ -1.66
LIMCH1-214ENST00000512228 SPRR2FQ96RM1 72 aa4.66□□□□□ -1.66
LIMCH1-214ENST00000512228 MDN1Q9NU22 5596 aa4.65□□□□□ -1.67
LIMCH1-214ENST00000512228 KRTAP2-3P0C7H8 128 aa4.64□□□□□ -1.67
LIMCH1-214ENST00000512228 P0C880 135 aa4.64□□□□□ -1.67
LIMCH1-214ENST00000512228 ANAPC13Q9BS18 74 aa4.64□□□□□ -1.67
LIMCH1-214ENST00000512228 KRTAP2-4Q9BYR9 128 aa4.64□□□□□ -1.67
LIMCH1-214ENST00000512228 KRTAP4-8A0A0G2JLE6 195 aa4.63□□□□□ -1.67
LIMCH1-214ENST00000512228 KRTAP4-8Q9BYQ9 185 aa4.63□□□□□ -1.67
LIMCH1-214ENST00000512228 SPRR2EP22531 72 aa4.62□□□□□ -1.67
LIMCH1-214ENST00000512228 SPRR2BP35325 72 aa4.62□□□□□ -1.67
LIMCH1-214ENST00000512228 SPRR2AP35326 72 aa4.62□□□□□ -1.67
LIMCH1-214ENST00000512228 SPTSSBQ8NFR3 76 aa4.6□□□□□ -1.67
LIMCH1-214ENST00000512228 LCE1AQ5T7P2 110 aa4.59□□□□□ -1.67
LIMCH1-214ENST00000512228 KRTAP8-1Q8IUC2 63 aa4.58□□□□□ -1.68
LIMCH1-214ENST00000512228 PLAC4Q8WY50 150 aa4.58□□□□□ -1.68
LIMCH1-214ENST00000512228 CHKB-CPT1BH3BT56 60 aa4.57□□□□□ -1.68
LIMCH1-214ENST00000512228 PRO2289Q9P1D8 64 aa4.57□□□□□ -1.68
LIMCH1-214ENST00000512228 KRTAP12-2P59991 146 aa4.56□□□□□ -1.68
LIMCH1-214ENST00000512228 H7BZZ5 65 aa4.55□□□□□ -1.68
LIMCH1-214ENST00000512228 R4GN34 69 aa4.54□□□□□ -1.68
LIMCH1-214ENST00000512228 M0QZ58 72 aa4.53□□□□□ -1.68
LIMCH1-214ENST00000512228 KRTAP10-7P60409 375 aaPredicted RBP4.53□□□□□ -1.68
LIMCH1-214ENST00000512228 CCDC179H3BU77 68 aa4.49□□□□□ -1.69
LIMCH1-214ENST00000512228 LINC01554Q52M75 96 aa4.49□□□□□ -1.69
LIMCH1-214ENST00000512228 ATP5EP56381 51 aaPredicted RBP4.48□□□□□ -1.69
LIMCH1-214ENST00000512228 KRTAP2-2Q9BYT5 123 aa4.48□□□□□ -1.69
LIMCH1-214ENST00000512228 KRTAP2-1Q9BYU5 128 aa4.48□□□□□ -1.69
LIMCH1-214ENST00000512228 CYSTM1Q9H1C7 97 aa4.48□□□□□ -1.69
LIMCH1-214ENST00000512228 COA5Q86WW8 74 aa4.47□□□□□ -1.69
LIMCH1-214ENST00000512228 KRTAP10-12P60413 245 aa4.46□□□□□ -1.7
LIMCH1-214ENST00000512228 SPRR2DP22532 72 aa4.45□□□□□ -1.7
LIMCH1-214ENST00000512228 TMEM258P61165 79 aa4.41□□□□□ -1.7
LIMCH1-214ENST00000512228 SEC61GP60059 68 aa4.39□□□□□ -1.71
LIMCH1-214ENST00000512228 LCE3BQ5TA77 95 aa4.37□□□□□ -1.71
LIMCH1-214ENST00000512228 SERP1Q9Y6X1 66 aa4.36□□□□□ -1.71
LIMCH1-214ENST00000512228 KRTAP13-4Q3LI77 160 aa4.32□□□□□ -1.72
LIMCH1-214ENST00000512228 KRTAP4-12Q9BQ66 201 aa4.31□□□□□ -1.72
LIMCH1-214ENST00000512228 A0A1B0GU69 56 aa4.27□□□□□ -1.73
LIMCH1-214ENST00000512228 PRR15LQ9BU68 103 aa4.26□□□□□ -1.73
LIMCH1-214ENST00000512228 KRTAP9-9Q9BYP9 154 aa4.26□□□□□ -1.73
LIMCH1-214ENST00000512228 KRTAP9-4Q9BYQ2 154 aa4.26□□□□□ -1.73
LIMCH1-214ENST00000512228 PCP4P48539 62 aa4.25□□□□□ -1.73
LIMCH1-214ENST00000512228 KRTAP19-7Q3SYF9 63 aa4.24□□□□□ -1.73
LIMCH1-214ENST00000512228 A0A1B0GU33 70 aa4.23□□□□□ -1.73
LIMCH1-214ENST00000512228 LINC01558Q9Y6Z2 57 aa4.22□□□□□ -1.73
LIMCH1-214ENST00000512228 LCE5AQ5TCM9 118 aa4.2□□□□□ -1.74
LIMCH1-214ENST00000512228 V9GYY9 64 aa4.18□□□□□ -1.74
LIMCH1-214ENST00000512228 MT1EP04732 61 aa4.17□□□□□ -1.74
LIMCH1-214ENST00000512228 KRTAP4-9Q9BYQ8 210 aa4.17□□□□□ -1.74
LIMCH1-214ENST00000512228 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
LIMCH1-214ENST00000512228 SMIM26A0A096LP01 95 aa4.15□□□□□ -1.75
LIMCH1-214ENST00000512228 KRTAP19-3Q7Z4W3 81 aa4.14□□□□□ -1.75
LIMCH1-214ENST00000512228 CAMK2N1Q7Z7J9 78 aa4.14□□□□□ -1.75
LIMCH1-214ENST00000512228 H3BS24 57 aa4.13□□□□□ -1.75
LIMCH1-214ENST00000512228 SPATA8Q6RVD6 105 aa4.13□□□□□ -1.75
LIMCH1-214ENST00000512228 RPS28P62857 69 aaKnown RBP4.12□□□□□ -1.75
LIMCH1-214ENST00000512228 KRTAP4-7Q9BYR0 210 aa4.12□□□□□ -1.75
LIMCH1-214ENST00000512228 Q1T7F1 81 aa4.11□□□□□ -1.75
LIMCH1-214ENST00000512228 UQCR11O14957 56 aa4.1□□□□□ -1.75
LIMCH1-214ENST00000512228 A0A0D9SG42 100 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms