RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 VPS13BQ7Z7G8 4022 aa5.99□□□□□ -1.45
LIMCH1-213ENST00000511496 KRTAP10-1P60331 282 aa5.96□□□□□ -1.45
LIMCH1-213ENST00000511496 DNAH5Q8TE73 4624 aa5.95□□□□□ -1.46
LIMCH1-213ENST00000511496 RPS29P62273 56 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-213ENST00000511496 PRKDCP78527 4128 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-213ENST00000511496 FAT2Q9NYQ8 4349 aa5.85□□□□□ -1.47
LIMCH1-213ENST00000511496 M0QZ58 72 aa5.83□□□□□ -1.48
LIMCH1-213ENST00000511496 SMR3BP02814 79 aaPredicted RBP5.8□□□□□ -1.48
LIMCH1-213ENST00000511496 APOBP04114 4563 aaKnown RBP5.79□□□□□ -1.48
LIMCH1-213ENST00000511496 CAMK2N1Q7Z7J9 78 aa5.76□□□□□ -1.49
LIMCH1-213ENST00000511496 PKHD1P08F94 4074 aa5.74□□□□□ -1.49
LIMCH1-213ENST00000511496 R4GN34 69 aa5.71□□□□□ -1.49
LIMCH1-213ENST00000511496 HSPG2P98160 4391 aa5.68□□□□□ -1.5
LIMCH1-213ENST00000511496 MYCBP2O75592 4640 aa5.67□□□□□ -1.5
LIMCH1-213ENST00000511496 SACSQ9NZJ4 4579 aa5.65□□□□□ -1.5
LIMCH1-213ENST00000511496 PKD1P98161 4303 aa5.65□□□□□ -1.51
LIMCH1-213ENST00000511496 FAT1Q14517 4588 aa5.64□□□□□ -1.51
LIMCH1-213ENST00000511496 PRO2289Q9P1D8 64 aa5.64□□□□□ -1.51
LIMCH1-213ENST00000511496 PP632Q6XCG6 107 aa5.61□□□□□ -1.51
LIMCH1-213ENST00000511496 DYNC1H1Q14204 4646 aaKnown RBP5.59□□□□□ -1.51
LIMCH1-213ENST00000511496 LRP1Q07954 4544 aaKnown RBP5.59□□□□□ -1.52
LIMCH1-213ENST00000511496 HYDINQ4G0P3 5121 aa5.55□□□□□ -1.52
LIMCH1-213ENST00000511496 PKHD1L1Q86WI1 4243 aa5.54□□□□□ -1.52
LIMCH1-213ENST00000511496 LORP23490 312 aaPredicted RBP5.5□□□□□ -1.53
LIMCH1-213ENST00000511496 FAT3Q8TDW7 4589 aa5.49□□□□□ -1.53
LIMCH1-213ENST00000511496 LPAP08519 4548 aa5.47□□□□□ -1.53
LIMCH1-213ENST00000511496 J3QL48 77 aa5.46□□□□□ -1.54
LIMCH1-213ENST00000511496 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
LIMCH1-213ENST00000511496 KRTAP10-4P60372 401 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-213ENST00000511496 INE1O15225 51 aa5.35□□□□□ -1.55
LIMCH1-213ENST00000511496 TNP1P09430 55 aa5.32□□□□□ -1.56
LIMCH1-213ENST00000511496 TNXBP22105 4242 aa5.31□□□□□ -1.56
LIMCH1-213ENST00000511496 LRP2P98164 4655 aa5.31□□□□□ -1.56
LIMCH1-213ENST00000511496 KMT2CQ8NEZ4 4911 aaKnown RBP5.24□□□□□ -1.57
LIMCH1-213ENST00000511496 KRTAP23-1A1A580 65 aa5.11□□□□□ -1.59
LIMCH1-213ENST00000511496 Q5VSD8 79 aa5.06□□□□□ -1.6
LIMCH1-213ENST00000511496 DNHD1Q96M86 4753 aa5.06□□□□□ -1.6
LIMCH1-213ENST00000511496 A0A1B0GVY2 172 aa5.03□□□□□ -1.6
LIMCH1-213ENST00000511496 RYR1P21817 5038 aa4.99□□□□□ -1.61
LIMCH1-213ENST00000511496 LCE3AQ5TA76 89 aa4.98□□□□□ -1.61
LIMCH1-213ENST00000511496 MT1HL1P0DM35 61 aa4.91□□□□□ -1.62
LIMCH1-213ENST00000511496 KRTAP4-1Q9BYQ7 146 aa4.86□□□□□ -1.63
LIMCH1-213ENST00000511496 MUC17Q685J3 4493 aa4.85□□□□□ -1.63
LIMCH1-213ENST00000511496 ABCA13Q86UQ4 5058 aa4.81□□□□□ -1.64
LIMCH1-213ENST00000511496 KRTAP17-1Q9BYP8 105 aa4.8□□□□□ -1.64
LIMCH1-213ENST00000511496 KRTAP21-3Q3LHN1 58 aa4.76□□□□□ -1.65
LIMCH1-213ENST00000511496 MUC2Q02817 5179 aa4.76□□□□□ -1.65
LIMCH1-213ENST00000511496 FLGP20930 4061 aaPredicted RBP4.74□□□□□ -1.65
LIMCH1-213ENST00000511496 KIAA1109Q2LD37 5005 aa4.72□□□□□ -1.65
LIMCH1-213ENST00000511496 KRTAP10-10P60014 251 aa4.72□□□□□ -1.65
LIMCH1-213ENST00000511496 KRTAP8-1Q8IUC2 63 aa4.71□□□□□ -1.66
LIMCH1-213ENST00000511496 KRTAP19-2Q3LHN2 52 aa4.69□□□□□ -1.66
LIMCH1-213ENST00000511496 KRTAP12-3P60328 96 aa4.68□□□□□ -1.66
LIMCH1-213ENST00000511496 KRTAP10-12P60413 245 aa4.68□□□□□ -1.66
LIMCH1-213ENST00000511496 RYR2Q92736 4967 aa4.67□□□□□ -1.66
LIMCH1-213ENST00000511496 RYR3Q15413 4870 aa4.62□□□□□ -1.67
LIMCH1-213ENST00000511496 PCLOQ9Y6V0 5065 aa4.6□□□□□ -1.67
LIMCH1-213ENST00000511496 HERC1Q15751 4861 aa4.58□□□□□ -1.68
LIMCH1-213ENST00000511496 EPPK1P58107 5090 aaKnown RBP4.55□□□□□ -1.68
LIMCH1-213ENST00000511496 KRTAP19-1Q8IUB9 90 aa4.55□□□□□ -1.68
LIMCH1-213ENST00000511496 SPRR2GQ9BYE4 73 aa4.53□□□□□ -1.68
LIMCH1-213ENST00000511496 FAT4Q6V0I7 4981 aa4.48□□□□□ -1.69
LIMCH1-213ENST00000511496 KRTAP10-5P60370 271 aa4.45□□□□□ -1.7
LIMCH1-213ENST00000511496 HMCN2Q8NDA2 5059 aa4.44□□□□□ -1.7
LIMCH1-213ENST00000511496 M0R2T5 61 aa4.43□□□□□ -1.7
LIMCH1-213ENST00000511496 UBR4Q5T4S7 5183 aa4.41□□□□□ -1.7
LIMCH1-213ENST00000511496 LCE3CQ5T5A8 94 aa4.4□□□□□ -1.71
LIMCH1-213ENST00000511496 KRTAP4-5Q9BYR2 181 aa4.4□□□□□ -1.71
LIMCH1-213ENST00000511496 KRTAP10-7P60409 375 aaPredicted RBP4.37□□□□□ -1.71
LIMCH1-213ENST00000511496 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
LIMCH1-213ENST00000511496 HERC2O95714 4834 aa4.35□□□□□ -1.71
LIMCH1-213ENST00000511496 MT1XP80297 61 aa4.34□□□□□ -1.72
LIMCH1-213ENST00000511496 KRTAP2-3P0C7H8 128 aa4.3□□□□□ -1.72
LIMCH1-213ENST00000511496 KRTAP2-4Q9BYR9 128 aa4.3□□□□□ -1.72
LIMCH1-213ENST00000511496 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
LIMCH1-213ENST00000511496 KRTAP19-5Q3LI72 72 aa4.29□□□□□ -1.72
LIMCH1-213ENST00000511496 MT1FP04733 61 aa4.25□□□□□ -1.73
LIMCH1-213ENST00000511496 KMT2DO14686 5537 aa4.24□□□□□ -1.73
LIMCH1-213ENST00000511496 MT1BP07438 61 aa4.2□□□□□ -1.74
LIMCH1-213ENST00000511496 KRTAP4-7Q9BYR0 210 aa4.2□□□□□ -1.74
LIMCH1-213ENST00000511496 MT2AP02795 61 aa4.19□□□□□ -1.74
LIMCH1-213ENST00000511496 LCE2CQ5TA81 110 aa4.18□□□□□ -1.74
LIMCH1-213ENST00000511496 RNF213Q63HN8 5207 aa4.18□□□□□ -1.74
LIMCH1-213ENST00000511496 KRTAP19-8Q3LI54 63 aa4.17□□□□□ -1.74
LIMCH1-213ENST00000511496 BIRC6Q9NR09 4857 aa4.14□□□□□ -1.75
LIMCH1-213ENST00000511496 KRTAP12-4P60329 112 aa4.14□□□□□ -1.75
LIMCH1-213ENST00000511496 MT1HP80294 61 aa4.07□□□□□ -1.76
LIMCH1-213ENST00000511496 KRTAP9-8Q9BYQ0 159 aa4.05□□□□□ -1.76
LIMCH1-213ENST00000511496 KRTAP4-8A0A0G2JLE6 195 aa4.04□□□□□ -1.76
LIMCH1-213ENST00000511496 KRTAP4-8Q9BYQ9 185 aa4.04□□□□□ -1.76
LIMCH1-213ENST00000511496 USH2AO75445 5202 aa3.94□□□□□ -1.78
LIMCH1-213ENST00000511496 LOC100996750A0A140TA64 210 aa3.87□□□□□ -1.79
LIMCH1-213ENST00000511496 CRCT1Q9UGL9 99 aa3.86□□□□□ -1.79
LIMCH1-213ENST00000511496 KRTAP19-7Q3SYF9 63 aa3.85□□□□□ -1.79
LIMCH1-213ENST00000511496 SYNE1Q8NF91 8797 aaKnown RBP3.85□□□□□ -1.79
LIMCH1-213ENST00000511496 KRTAP9-3Q9BYQ3 159 aa3.83□□□□□ -1.8
LIMCH1-213ENST00000511496 MT1LQ93083 61 aa3.79□□□□□ -1.8
LIMCH1-213ENST00000511496 PRM1P04553 51 aa3.75□□□□□ -1.81
LIMCH1-213ENST00000511496 MT1GP13640 62 aa3.75□□□□□ -1.81
LIMCH1-213ENST00000511496 KRTAP4-9Q9BYQ8 210 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms