RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 TENM1Q9UKZ4 2725 aa1.98□□□□□ -2.09
NEDD4-209ENST00000508871 APOBP04114 4563 aaKnown RBP1.98□□□□□ -2.09
NEDD4-209ENST00000508871 KRTAP10-4P60372 401 aaPredicted RBP1.98□□□□□ -2.09
NEDD4-209ENST00000508871 VWFP04275 2813 aa1.97□□□□□ -2.09
NEDD4-209ENST00000508871 HECTD1Q9ULT8 2610 aa1.97□□□□□ -2.09
NEDD4-209ENST00000508871 HSPG2P98160 4391 aa1.97□□□□□ -2.09
NEDD4-209ENST00000508871 TNXBP22105 4242 aa1.96□□□□□ -2.1
NEDD4-209ENST00000508871 MTORP42345 2549 aa1.95□□□□□ -2.1
NEDD4-209ENST00000508871 CCDC168Q8NDH2 2452 aa1.95□□□□□ -2.1
NEDD4-209ENST00000508871 FAT3Q8TDW7 4589 aa1.95□□□□□ -2.1
NEDD4-209ENST00000508871 PKD1L1Q8TDX9 2849 aa1.93□□□□□ -2.1
NEDD4-209ENST00000508871 FAT1Q14517 4588 aa1.93□□□□□ -2.1
NEDD4-209ENST00000508871 HYDINQ4G0P3 5121 aa1.93□□□□□ -2.1
NEDD4-209ENST00000508871 KRTAP13-3Q3SY46 172 aa1.92□□□□□ -2.1
NEDD4-209ENST00000508871 NBEAL1Q6ZS30 2694 aa1.92□□□□□ -2.1
NEDD4-209ENST00000508871 DNHD1Q96M86 4753 aa1.92□□□□□ -2.1
NEDD4-209ENST00000508871 ATRQ13535 2644 aa1.92□□□□□ -2.1
NEDD4-209ENST00000508871 LRP1BQ9NZR2 4599 aa1.92□□□□□ -2.1
NEDD4-209ENST00000508871 DMBT1Q9UGM3 2413 aaPredicted RBP1.92□□□□□ -2.1
NEDD4-209ENST00000508871 Q5VSD8 79 aa1.92□□□□□ -2.1
NEDD4-209ENST00000508871 TENM3Q9P273 2699 aa1.91□□□□□ -2.1
NEDD4-209ENST00000508871 COL7A1Q02388 2944 aa1.91□□□□□ -2.1
NEDD4-209ENST00000508871 FBN3Q75N90 2809 aa1.91□□□□□ -2.1
NEDD4-209ENST00000508871 KRTAP10-8P60410 259 aa1.91□□□□□ -2.1
NEDD4-209ENST00000508871 LCE4AQ5TA78 99 aa1.91□□□□□ -2.1
NEDD4-209ENST00000508871 RYR2Q92736 4967 aa1.91□□□□□ -2.1
NEDD4-209ENST00000508871 KRTAP12-1P59990 96 aa1.9□□□□□ -2.1
NEDD4-209ENST00000508871 MUC17Q685J3 4493 aa1.89□□□□□ -2.11
NEDD4-209ENST00000508871 FLNBO75369 2602 aaKnown RBP1.89□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP13-4Q3LI77 160 aa1.88□□□□□ -2.11
NEDD4-209ENST00000508871 SETD2Q9BYW2 2564 aaPredicted RBP1.88□□□□□ -2.11
NEDD4-209ENST00000508871 LCE3BQ5TA77 95 aa1.88□□□□□ -2.11
NEDD4-209ENST00000508871 SMR3BP02814 79 aaPredicted RBP1.88□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP5-3Q6L8H2 238 aa1.88□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP19-1Q8IUB9 90 aa1.87□□□□□ -2.11
NEDD4-209ENST00000508871 MEGF8Q7Z7M0 2845 aa1.87□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP12-2P59991 146 aa1.87□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP9-6A0A140TA67 174 aa1.87□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP9-7A8MTY7 169 aa1.87□□□□□ -2.11
NEDD4-209ENST00000508871 STAB1Q9NY15 2570 aa1.85□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP9-8Q9BYQ0 159 aa1.84□□□□□ -2.11
NEDD4-209ENST00000508871 NBEAL2Q6ZNJ1 2754 aa1.84□□□□□ -2.11
NEDD4-209ENST00000508871 MT1HL1P0DM35 61 aa1.84□□□□□ -2.11
NEDD4-209ENST00000508871 KRTAP9-2Q9BYQ4 174 aa1.82□□□□□ -2.12
NEDD4-209ENST00000508871 KRTAP4-8Q9BYQ9 185 aa1.82□□□□□ -2.12
NEDD4-209ENST00000508871 COL6A5A8TX70 2615 aa1.82□□□□□ -2.12
NEDD4-209ENST00000508871 KRTAP4-12Q9BQ66 201 aa1.82□□□□□ -2.12
NEDD4-209ENST00000508871 KRTAP9-4Q9BYQ2 154 aa1.81□□□□□ -2.12
NEDD4-209ENST00000508871 C9orf92A6NGG3 77 aa1.8□□□□□ -2.12
NEDD4-209ENST00000508871 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.8□□□□□ -2.12
NEDD4-209ENST00000508871 RYR1P21817 5038 aa1.78□□□□□ -2.12
NEDD4-209ENST00000508871 KRTAP5-9P26371 169 aa1.78□□□□□ -2.12
NEDD4-209ENST00000508871 TENM2Q9NT68 2774 aa1.78□□□□□ -2.12
NEDD4-209ENST00000508871 STAB2Q8WWQ8 2551 aa1.77□□□□□ -2.13
NEDD4-209ENST00000508871 RYR3Q15413 4870 aa1.77□□□□□ -2.13
NEDD4-209ENST00000508871 S4R3F8 94 aa1.76□□□□□ -2.13
NEDD4-209ENST00000508871 KRTAP9-9Q9BYP9 154 aa1.76□□□□□ -2.13
NEDD4-209ENST00000508871 H0YAA0 97 aa1.75□□□□□ -2.13
NEDD4-209ENST00000508871 NOTCH1P46531 2555 aa1.74□□□□□ -2.13
NEDD4-209ENST00000508871 KRTAP9-3Q9BYQ3 159 aa1.74□□□□□ -2.13
NEDD4-209ENST00000508871 LRP1Q07954 4544 aaKnown RBP1.74□□□□□ -2.13
NEDD4-209ENST00000508871 MGAM2Q2M2H8 2515 aa1.73□□□□□ -2.13
NEDD4-209ENST00000508871 MYCBP2O75592 4640 aa1.73□□□□□ -2.13
NEDD4-209ENST00000508871 KMT2CQ8NEZ4 4911 aaKnown RBP1.72□□□□□ -2.13
NEDD4-209ENST00000508871 LCE5AQ5TCM9 118 aa1.71□□□□□ -2.13
NEDD4-209ENST00000508871 TGP01266 2768 aa1.71□□□□□ -2.14
NEDD4-209ENST00000508871 PCLOQ9Y6V0 5065 aa1.71□□□□□ -2.14
NEDD4-209ENST00000508871 M0R2T5 61 aa1.7□□□□□ -2.14
NEDD4-209ENST00000508871 LCE1DQ5T752 114 aa1.7□□□□□ -2.14
NEDD4-209ENST00000508871 BIRC6Q9NR09 4857 aa1.7□□□□□ -2.14
NEDD4-209ENST00000508871 M0QZ58 72 aa1.69□□□□□ -2.14
NEDD4-209ENST00000508871 LCE3CQ5T5A8 94 aa1.69□□□□□ -2.14
NEDD4-209ENST00000508871 HERC2O95714 4834 aa1.68□□□□□ -2.14
NEDD4-209ENST00000508871 TNP1P09430 55 aa1.68□□□□□ -2.14
NEDD4-209ENST00000508871 SRRM2Q9UQ35 2752 aaKnown RBP1.67□□□□□ -2.14
NEDD4-209ENST00000508871 HERC1Q15751 4861 aa1.67□□□□□ -2.14
NEDD4-209ENST00000508871 KRTAP4-8A0A0G2JLE6 195 aa1.65□□□□□ -2.14
NEDD4-209ENST00000508871 KRTAP12-3P60328 96 aa1.65□□□□□ -2.15
NEDD4-209ENST00000508871 KRTAP19-2Q3LHN2 52 aa1.65□□□□□ -2.15
NEDD4-209ENST00000508871 FLGP20930 4061 aaPredicted RBP1.64□□□□□ -2.15
NEDD4-209ENST00000508871 EPPK1P58107 5090 aaKnown RBP1.64□□□□□ -2.15
NEDD4-209ENST00000508871 KRTAP10-6P60371 365 aaPredicted RBP1.64□□□□□ -2.15
NEDD4-209ENST00000508871 KRTAP4-1Q9BYQ7 146 aa1.63□□□□□ -2.15
NEDD4-209ENST00000508871 ABCA13Q86UQ4 5058 aa1.61□□□□□ -2.15
NEDD4-209ENST00000508871 KRTAP5-4Q6L8H1 288 aa1.59□□□□□ -2.15
NEDD4-209ENST00000508871 KRTAP10-12P60413 245 aa1.59□□□□□ -2.16
NEDD4-209ENST00000508871 LPAP08519 4548 aa1.58□□□□□ -2.16
NEDD4-209ENST00000508871 KRTAP4-11Q9BYQ6 195 aa1.57□□□□□ -2.16
NEDD4-209ENST00000508871 KRTAP10-7P60409 375 aaPredicted RBP1.57□□□□□ -2.16
NEDD4-209ENST00000508871 KRTAP4-9Q9BYQ8 210 aa1.57□□□□□ -2.16
NEDD4-209ENST00000508871 KRTAP4-2Q9BYR5 136 aa1.57□□□□□ -2.16
NEDD4-209ENST00000508871 MT1HP80294 61 aa1.56□□□□□ -2.16
NEDD4-209ENST00000508871 KRTAP4-7Q9BYR0 210 aa1.55□□□□□ -2.16
NEDD4-209ENST00000508871 KIAA1109Q2LD37 5005 aa1.55□□□□□ -2.16
NEDD4-209ENST00000508871 SPRR2GQ9BYE4 73 aa1.54□□□□□ -2.16
NEDD4-209ENST00000508871 LCE1FQ5T754 118 aa1.53□□□□□ -2.16
NEDD4-209ENST00000508871 KRTAP5-5Q701N2 237 aaPredicted RBP1.53□□□□□ -2.17
NEDD4-209ENST00000508871 LRP2P98164 4655 aa1.52□□□□□ -2.17
NEDD4-209ENST00000508871 LCE1AQ5T7P2 110 aa1.51□□□□□ -2.17
NEDD4-209ENST00000508871 HMCN2Q8NDA2 5059 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms