RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 VPS13BQ7Z7G8 4022 aa8.5□□□□□ -1.05
SCLT1-208ENST00000506368 RPL37P61927 97 aaKnown RBP8.47□□□□□ -1.05
SCLT1-208ENST00000506368 P0C880 135 aa8.46□□□□□ -1.05
SCLT1-208ENST00000506368 HERC2O95714 4834 aa8.44□□□□□ -1.06
SCLT1-208ENST00000506368 KRTAP4-5Q9BYR2 181 aa8.41□□□□□ -1.06
SCLT1-208ENST00000506368 Q5VSD8 79 aa8.38□□□□□ -1.07
SCLT1-208ENST00000506368 CRIPTQ9P021 101 aa8.37□□□□□ -1.07
SCLT1-208ENST00000506368 KRTAP10-4P60372 401 aaPredicted RBP8.36□□□□□ -1.07
SCLT1-208ENST00000506368 SPINT4Q6UDR6 99 aa8.36□□□□□ -1.07
SCLT1-208ENST00000506368 ABCA13Q86UQ4 5058 aa8.34□□□□□ -1.07
SCLT1-208ENST00000506368 C9orf92A6NGG3 77 aa8.33□□□□□ -1.08
SCLT1-208ENST00000506368 KRTAP10-6P60371 365 aaPredicted RBP8.28□□□□□ -1.08
SCLT1-208ENST00000506368 MYCBP2O75592 4640 aa8.27□□□□□ -1.08
SCLT1-208ENST00000506368 PCLOQ9Y6V0 5065 aa8.27□□□□□ -1.09
SCLT1-208ENST00000506368 TPRXLQ17RH7 258 aa8.27□□□□□ -1.09
SCLT1-208ENST00000506368 FLG2Q5D862 2391 aaPredicted RBP8.27□□□□□ -1.09
SCLT1-208ENST00000506368 PKHD1L1Q86WI1 4243 aa8.26□□□□□ -1.09
SCLT1-208ENST00000506368 LRP1Q07954 4544 aaKnown RBP8.26□□□□□ -1.09
SCLT1-208ENST00000506368 KRTAP15-1Q3LI76 137 aa8.23□□□□□ -1.09
SCLT1-208ENST00000506368 FAT3Q8TDW7 4589 aa8.18□□□□□ -1.1
SCLT1-208ENST00000506368 KRTAP13-4Q3LI77 160 aa8.18□□□□□ -1.1
SCLT1-208ENST00000506368 KRTAP3-3Q9BYR6 98 aa8.18□□□□□ -1.1
SCLT1-208ENST00000506368 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
SCLT1-208ENST00000506368 A0A0D9SG42 100 aa8.14□□□□□ -1.11
SCLT1-208ENST00000506368 S4R3F8 94 aa8.13□□□□□ -1.11
SCLT1-208ENST00000506368 NDUFAF8A1L188 74 aa8.11□□□□□ -1.11
SCLT1-208ENST00000506368 TNXBP22105 4242 aa8.08□□□□□ -1.12
SCLT1-208ENST00000506368 C10orf95Q9H7T3 257 aa8.07□□□□□ -1.12
SCLT1-208ENST00000506368 MT1HL1P0DM35 61 aa8.01□□□□□ -1.13
SCLT1-208ENST00000506368 XP32Q5T750 250 aa8.01□□□□□ -1.13
SCLT1-208ENST00000506368 KRTAP12-2P59991 146 aa7.99□□□□□ -1.13
SCLT1-208ENST00000506368 DMBT1Q9UGM3 2413 aaPredicted RBP7.97□□□□□ -1.13
SCLT1-208ENST00000506368 HERC1Q15751 4861 aa7.97□□□□□ -1.13
SCLT1-208ENST00000506368 KRTAP12-1P59990 96 aa7.97□□□□□ -1.13
SCLT1-208ENST00000506368 M0QZ58 72 aa7.96□□□□□ -1.13
SCLT1-208ENST00000506368 KRTAP10-8P60410 259 aa7.96□□□□□ -1.13
SCLT1-208ENST00000506368 J3QL48 77 aa7.96□□□□□ -1.14
SCLT1-208ENST00000506368 LPAP08519 4548 aa7.72□□□□□ -1.17
SCLT1-208ENST00000506368 HMCN2Q8NDA2 5059 aa7.72□□□□□ -1.17
SCLT1-208ENST00000506368 PLAC4Q8WY50 150 aa7.67□□□□□ -1.18
SCLT1-208ENST00000506368 LRP2P98164 4655 aa7.63□□□□□ -1.19
SCLT1-208ENST00000506368 LUZP6Q538Z0 58 aa7.59□□□□□ -1.19
SCLT1-208ENST00000506368 A0A0A0MQY5 61 aa7.58□□□□□ -1.2
SCLT1-208ENST00000506368 PP632Q6XCG6 107 aa7.58□□□□□ -1.2
SCLT1-208ENST00000506368 R4GN34 69 aa7.55□□□□□ -1.2
SCLT1-208ENST00000506368 UBR4Q5T4S7 5183 aa7.52□□□□□ -1.21
SCLT1-208ENST00000506368 RNF213Q63HN8 5207 aa7.37□□□□□ -1.23
SCLT1-208ENST00000506368 MUC2Q02817 5179 aa7.36□□□□□ -1.23
SCLT1-208ENST00000506368 MUC17Q685J3 4493 aa7.29□□□□□ -1.24
SCLT1-208ENST00000506368 KRTAP23-1A1A580 65 aa7.26□□□□□ -1.25
SCLT1-208ENST00000506368 CAMK2N1Q7Z7J9 78 aa7.21□□□□□ -1.26
SCLT1-208ENST00000506368 KRTAP4-1Q9BYQ7 146 aa7.21□□□□□ -1.26
SCLT1-208ENST00000506368 SEC61BP60468 96 aaKnown RBP7.18□□□□□ -1.26
SCLT1-208ENST00000506368 LORP23490 312 aaPredicted RBP7.16□□□□□ -1.26
SCLT1-208ENST00000506368 SPRR5A0A1B0GTR4 108 aa7.14□□□□□ -1.27
SCLT1-208ENST00000506368 TNP1P09430 55 aa7.08□□□□□ -1.28
SCLT1-208ENST00000506368 FAT4Q6V0I7 4981 aa7.06□□□□□ -1.28
SCLT1-208ENST00000506368 KRTAP19-2Q3LHN2 52 aa6.95□□□□□ -1.3
SCLT1-208ENST00000506368 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
SCLT1-208ENST00000506368 PRO2289Q9P1D8 64 aa6.85□□□□□ -1.31
SCLT1-208ENST00000506368 FLGP20930 4061 aaPredicted RBP6.83□□□□□ -1.32
SCLT1-208ENST00000506368 MT1HP80294 61 aa6.78□□□□□ -1.32
SCLT1-208ENST00000506368 LCE2AQ5TA79 106 aaPredicted RBP6.78□□□□□ -1.32
SCLT1-208ENST00000506368 INE1O15225 51 aa6.77□□□□□ -1.33
SCLT1-208ENST00000506368 M0R2T5 61 aa6.67□□□□□ -1.34
SCLT1-208ENST00000506368 LCE2DQ5TA82 110 aaPredicted RBP6.59□□□□□ -1.35
SCLT1-208ENST00000506368 SPRR2GQ9BYE4 73 aa6.57□□□□□ -1.36
SCLT1-208ENST00000506368 LCE3AQ5TA76 89 aa6.5□□□□□ -1.37
SCLT1-208ENST00000506368 KRTAP8-1Q8IUC2 63 aa6.48□□□□□ -1.37
SCLT1-208ENST00000506368 KRTAP9-8Q9BYQ0 159 aa6.48□□□□□ -1.37
SCLT1-208ENST00000506368 MT2AP02795 61 aa6.41□□□□□ -1.38
SCLT1-208ENST00000506368 KRTAP19-1Q8IUB9 90 aa6.4□□□□□ -1.38
SCLT1-208ENST00000506368 MT1FP04733 61 aa6.39□□□□□ -1.39
SCLT1-208ENST00000506368 KRTAP10-10P60014 251 aa6.34□□□□□ -1.4
SCLT1-208ENST00000506368 KRTAP9-2Q9BYQ4 174 aa6.3□□□□□ -1.4
SCLT1-208ENST00000506368 FSIP2Q5CZC0 6907 aa6.3□□□□□ -1.4
SCLT1-208ENST00000506368 KRTAP9-3Q9BYQ3 159 aa6.25□□□□□ -1.41
SCLT1-208ENST00000506368 KRTAP12-3P60328 96 aa6.24□□□□□ -1.41
SCLT1-208ENST00000506368 LOC100996750A0A140TA64 210 aa6.21□□□□□ -1.41
SCLT1-208ENST00000506368 KRTAP19-8Q3LI54 63 aa6.21□□□□□ -1.41
SCLT1-208ENST00000506368 KRTAP4-6Q9BYQ5 205 aa6.21□□□□□ -1.41
SCLT1-208ENST00000506368 USH2AO75445 5202 aa6.19□□□□□ -1.42
SCLT1-208ENST00000506368 LCE2BO14633 110 aa6.18□□□□□ -1.42
SCLT1-208ENST00000506368 KRTAP10-12P60413 245 aa6.18□□□□□ -1.42
SCLT1-208ENST00000506368 KRTAP10-5P60370 271 aa6.1□□□□□ -1.43
SCLT1-208ENST00000506368 MT1XP80297 61 aa6.07□□□□□ -1.44
SCLT1-208ENST00000506368 SSPOA2VEC9 5147 aa6.05□□□□□ -1.44
SCLT1-208ENST00000506368 MT1BP07438 61 aa6.01□□□□□ -1.45
SCLT1-208ENST00000506368 CRCT1Q9UGL9 99 aa5.98□□□□□ -1.45
SCLT1-208ENST00000506368 KRTAP9-6A0A140TA67 174 aa5.93□□□□□ -1.46
SCLT1-208ENST00000506368 LCE3CQ5T5A8 94 aa5.91□□□□□ -1.46
SCLT1-208ENST00000506368 KRTAP10-7P60409 375 aaPredicted RBP5.88□□□□□ -1.47
SCLT1-208ENST00000506368 FCGBPQ9Y6R7 5405 aaPredicted RBP5.84□□□□□ -1.48
SCLT1-208ENST00000506368 KRTAP19-6Q3LI70 58 aa5.82□□□□□ -1.48
SCLT1-208ENST00000506368 KRTAP19-4Q3LI73 84 aa5.79□□□□□ -1.48
SCLT1-208ENST00000506368 KRTAP19-5Q3LI72 72 aa5.75□□□□□ -1.49
SCLT1-208ENST00000506368 KRTAP2-3P0C7H8 128 aa5.74□□□□□ -1.49
SCLT1-208ENST00000506368 KRTAP2-4Q9BYR9 128 aa5.74□□□□□ -1.49
SCLT1-208ENST00000506368 KRTAP2-1Q9BYU5 128 aa5.74□□□□□ -1.49
SCLT1-208ENST00000506368 MACF1Q9UPN3 7388 aaKnown RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms