RNA–Protein interactions for RNA: ENST00000505625.5

MATR3-211, Transcript of matrin 3, humanhuman

TSL 1 (best)

Gene MATR3, Length 7,306 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-211ENST00000505625 KRTAP13-4Q3LI77 160 aa2.4□□□□□ -2.03
MATR3-211ENST00000505625 KRTAP17-1Q9BYP8 105 aa2.37□□□□□ -2.03
MATR3-211ENST00000505625 DNAH1Q9P2D7 4330 aa2.37□□□□□ -2.03
MATR3-211ENST00000505625 SPRR2FQ96RM1 72 aa2.36□□□□□ -2.03
MATR3-211ENST00000505625 VWFP04275 2813 aa2.34□□□□□ -2.03
MATR3-211ENST00000505625 SPRR2EP22531 72 aa2.34□□□□□ -2.03
MATR3-211ENST00000505625 SPRR2BP35325 72 aa2.34□□□□□ -2.03
MATR3-211ENST00000505625 SPRR2AP35326 72 aa2.34□□□□□ -2.03
MATR3-211ENST00000505625 LCE2DQ5TA82 110 aaPredicted RBP2.34□□□□□ -2.03
MATR3-211ENST00000505625 SPRR5A0A1B0GTR4 108 aa2.33□□□□□ -2.04
MATR3-211ENST00000505625 PKD1L1Q8TDX9 2849 aa2.33□□□□□ -2.04
MATR3-211ENST00000505625 PCLOQ9Y6V0 5065 aa2.32□□□□□ -2.04
MATR3-211ENST00000505625 KRTAP10-7P60409 375 aaPredicted RBP2.32□□□□□ -2.04
MATR3-211ENST00000505625 MEGF8Q7Z7M0 2845 aa2.32□□□□□ -2.04
MATR3-211ENST00000505625 HECTD4Q9Y4D8 3996 aa2.32□□□□□ -2.04
MATR3-211ENST00000505625 DYNC2H1Q8NCM8 4307 aaKnown RBP2.32□□□□□ -2.04
MATR3-211ENST00000505625 STARD9Q9P2P6 4700 aa2.31□□□□□ -2.04
MATR3-211ENST00000505625 VPS13DQ5THJ4 4388 aa2.31□□□□□ -2.04
MATR3-211ENST00000505625 DNAH6Q9C0G6 4158 aa2.31□□□□□ -2.04
MATR3-211ENST00000505625 KRTAP12-1P59990 96 aa2.31□□□□□ -2.04
MATR3-211ENST00000505625 VPS13BQ7Z7G8 4022 aa2.29□□□□□ -2.04
MATR3-211ENST00000505625 COL7A1Q02388 2944 aa2.29□□□□□ -2.04
MATR3-211ENST00000505625 PLECQ15149 4684 aaKnown RBP2.29□□□□□ -2.04
MATR3-211ENST00000505625 FAT2Q9NYQ8 4349 aa2.28□□□□□ -2.04
MATR3-211ENST00000505625 TENM3Q9P273 2699 aa2.27□□□□□ -2.05
MATR3-211ENST00000505625 LCE3AQ5TA76 89 aa2.27□□□□□ -2.05
MATR3-211ENST00000505625 DNAH11Q96DT5 4516 aa2.26□□□□□ -2.05
MATR3-211ENST00000505625 DNAH2Q9P225 4427 aa2.26□□□□□ -2.05
MATR3-211ENST00000505625 SPRR2DP22532 72 aa2.25□□□□□ -2.05
MATR3-211ENST00000505625 KRTAP12-3P60328 96 aa2.25□□□□□ -2.05
MATR3-211ENST00000505625 DNAH17Q9UFH2 4485 aa2.24□□□□□ -2.05
MATR3-211ENST00000505625 TGP01266 2768 aa2.23□□□□□ -2.05
MATR3-211ENST00000505625 KRTAP23-1A1A580 65 aa2.22□□□□□ -2.05
MATR3-211ENST00000505625 MT1HL1P0DM35 61 aa2.22□□□□□ -2.05
MATR3-211ENST00000505625 LCE2CQ5TA81 110 aa2.16□□□□□ -2.06
MATR3-211ENST00000505625 DNAH8Q96JB1 4490 aa2.16□□□□□ -2.06
MATR3-211ENST00000505625 LCE2BO14633 110 aa2.15□□□□□ -2.06
MATR3-211ENST00000505625 PKHD1P08F94 4074 aa2.15□□□□□ -2.06
MATR3-211ENST00000505625 KRTAP10-4P60372 401 aaPredicted RBP2.15□□□□□ -2.07
MATR3-211ENST00000505625 KRTAP3-1Q9BYR8 98 aa2.15□□□□□ -2.07
MATR3-211ENST00000505625 LRP1BQ9NZR2 4599 aa2.15□□□□□ -2.07
MATR3-211ENST00000505625 HYDINQ4G0P3 5121 aa2.14□□□□□ -2.07
MATR3-211ENST00000505625 LPAP08519 4548 aa2.14□□□□□ -2.07
MATR3-211ENST00000505625 HSPG2P98160 4391 aa2.14□□□□□ -2.07
MATR3-211ENST00000505625 DNHD1Q96M86 4753 aa2.13□□□□□ -2.07
MATR3-211ENST00000505625 MT1HP80294 61 aa2.13□□□□□ -2.07
MATR3-211ENST00000505625 DNAH5Q8TE73 4624 aa2.13□□□□□ -2.07
MATR3-211ENST00000505625 SACSQ9NZJ4 4579 aa2.12□□□□□ -2.07
MATR3-211ENST00000505625 MT4P47944 62 aa2.1□□□□□ -2.07
MATR3-211ENST00000505625 PKHD1L1Q86WI1 4243 aa2.1□□□□□ -2.07
MATR3-211ENST00000505625 FBN3Q75N90 2809 aa2.1□□□□□ -2.07
MATR3-211ENST00000505625 LCE3BQ5TA77 95 aa2.1□□□□□ -2.07
MATR3-211ENST00000505625 PKD1P98161 4303 aa2.09□□□□□ -2.08
MATR3-211ENST00000505625 TNXBP22105 4242 aa2.08□□□□□ -2.08
MATR3-211ENST00000505625 INE1O15225 51 aa2.07□□□□□ -2.08
MATR3-211ENST00000505625 KRTAP19-5Q3LI72 72 aa2.05□□□□□ -2.08
MATR3-211ENST00000505625 KRTAP4-1Q9BYQ7 146 aa2.05□□□□□ -2.08
MATR3-211ENST00000505625 KRTAP12-4P60329 112 aa2.04□□□□□ -2.08
MATR3-211ENST00000505625 APOBP04114 4563 aaKnown RBP2.03□□□□□ -2.08
MATR3-211ENST00000505625 RYR3Q15413 4870 aa2.03□□□□□ -2.09
MATR3-211ENST00000505625 FAT1Q14517 4588 aa2.02□□□□□ -2.09
MATR3-211ENST00000505625 DYNC1H1Q14204 4646 aaKnown RBP2.02□□□□□ -2.09
MATR3-211ENST00000505625 SRRM2Q9UQ35 2752 aaKnown RBP2.01□□□□□ -2.09
MATR3-211ENST00000505625 MT1GP13640 62 aa1.98□□□□□ -2.09
MATR3-211ENST00000505625 MT2AP02795 61 aa1.97□□□□□ -2.09
MATR3-211ENST00000505625 LCE2AQ5TA79 106 aaPredicted RBP1.97□□□□□ -2.09
MATR3-211ENST00000505625 KRTAP9-6A0A140TA67 174 aa1.97□□□□□ -2.09
MATR3-211ENST00000505625 KRTAP19-1Q8IUB9 90 aa1.97□□□□□ -2.09
MATR3-211ENST00000505625 KRTAP9-2Q9BYQ4 174 aa1.96□□□□□ -2.1
MATR3-211ENST00000505625 FAT3Q8TDW7 4589 aa1.96□□□□□ -2.1
MATR3-211ENST00000505625 MT1FP04733 61 aa1.95□□□□□ -2.1
MATR3-211ENST00000505625 LRP1Q07954 4544 aaKnown RBP1.94□□□□□ -2.1
MATR3-211ENST00000505625 LCE1BQ5T7P3 118 aa1.93□□□□□ -2.1
MATR3-211ENST00000505625 KRTAP20-1Q3LI63 56 aa1.92□□□□□ -2.1
MATR3-211ENST00000505625 RYR2Q92736 4967 aa1.92□□□□□ -2.1
MATR3-211ENST00000505625 LCE3CQ5T5A8 94 aa1.91□□□□□ -2.1
MATR3-211ENST00000505625 FLGP20930 4061 aaPredicted RBP1.89□□□□□ -2.11
MATR3-211ENST00000505625 LCE1DQ5T752 114 aa1.89□□□□□ -2.11
MATR3-211ENST00000505625 EPPK1P58107 5090 aaKnown RBP1.88□□□□□ -2.11
MATR3-211ENST00000505625 MYCBP2O75592 4640 aa1.88□□□□□ -2.11
MATR3-211ENST00000505625 KMT2CQ8NEZ4 4911 aaKnown RBP1.88□□□□□ -2.11
MATR3-211ENST00000505625 UBR4Q5T4S7 5183 aa1.88□□□□□ -2.11
MATR3-211ENST00000505625 LCE5AQ5TCM9 118 aa1.87□□□□□ -2.11
MATR3-211ENST00000505625 MUC17Q685J3 4493 aa1.87□□□□□ -2.11
MATR3-211ENST00000505625 RYR1P21817 5038 aa1.87□□□□□ -2.11
MATR3-211ENST00000505625 LCE3EQ5T5B0 92 aa1.86□□□□□ -2.11
MATR3-211ENST00000505625 LCE1CQ5T751 118 aa1.84□□□□□ -2.12
MATR3-211ENST00000505625 LCE1EQ5T753 118 aa1.84□□□□□ -2.12
MATR3-211ENST00000505625 LCE1FQ5T754 118 aa1.84□□□□□ -2.12
MATR3-211ENST00000505625 LCE1AQ5T7P2 110 aa1.84□□□□□ -2.12
MATR3-211ENST00000505625 HERC2O95714 4834 aa1.83□□□□□ -2.12
MATR3-211ENST00000505625 KRTAP4-8A0A0G2JLE6 195 aa1.83□□□□□ -2.12
MATR3-211ENST00000505625 KRTAP19-4Q3LI73 84 aa1.83□□□□□ -2.12
MATR3-211ENST00000505625 KRTAP4-8Q9BYQ9 185 aa1.83□□□□□ -2.12
MATR3-211ENST00000505625 MUC2Q02817 5179 aa1.81□□□□□ -2.12
MATR3-211ENST00000505625 SPRR2GQ9BYE4 73 aa1.81□□□□□ -2.12
MATR3-211ENST00000505625 KRTAP9-7A8MTY7 169 aa1.81□□□□□ -2.12
MATR3-211ENST00000505625 KRTAP19-6Q3LI70 58 aa1.8□□□□□ -2.12
MATR3-211ENST00000505625 ABCA13Q86UQ4 5058 aa1.79□□□□□ -2.12
MATR3-211ENST00000505625 KRTAP4-9Q9BYQ8 210 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms