RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 M0R2T5 61 aa4.4□□□□□ -1.7
USP54-215ENST00000497106 KRTAP4-5Q9BYR2 181 aa4.4□□□□□ -1.7
USP54-215ENST00000497106 KRTAP25-1Q3LHN0 102 aa4.37□□□□□ -1.71
USP54-215ENST00000497106 RYR1P21817 5038 aa4.36□□□□□ -1.71
USP54-215ENST00000497106 SRRM2Q9UQ35 2752 aaKnown RBP4.33□□□□□ -1.72
USP54-215ENST00000497106 VPS13BQ7Z7G8 4022 aa4.33□□□□□ -1.72
USP54-215ENST00000497106 FAT1Q14517 4588 aa4.32□□□□□ -1.72
USP54-215ENST00000497106 PKHD1L1Q86WI1 4243 aa4.31□□□□□ -1.72
USP54-215ENST00000497106 HSPG2P98160 4391 aa4.28□□□□□ -1.72
USP54-215ENST00000497106 RYR3Q15413 4870 aa4.28□□□□□ -1.72
USP54-215ENST00000497106 KRTAP17-1Q9BYP8 105 aa4.28□□□□□ -1.72
USP54-215ENST00000497106 KMT2CQ8NEZ4 4911 aaKnown RBP4.28□□□□□ -1.72
USP54-215ENST00000497106 A0A1B0GU33 70 aa4.27□□□□□ -1.73
USP54-215ENST00000497106 P0C880 135 aa4.27□□□□□ -1.73
USP54-215ENST00000497106 BIRC6Q9NR09 4857 aa4.26□□□□□ -1.73
USP54-215ENST00000497106 PKHD1P08F94 4074 aa4.25□□□□□ -1.73
USP54-215ENST00000497106 SPINT4Q6UDR6 99 aa4.23□□□□□ -1.73
USP54-215ENST00000497106 KIAA1109Q2LD37 5005 aa4.22□□□□□ -1.73
USP54-215ENST00000497106 LUZP6Q538Z0 58 aa4.2□□□□□ -1.74
USP54-215ENST00000497106 NDUFAF8A1L188 74 aa4.19□□□□□ -1.74
USP54-215ENST00000497106 KRTAP3-1Q9BYR8 98 aa4.19□□□□□ -1.74
USP54-215ENST00000497106 CRIPTQ9P021 101 aa4.18□□□□□ -1.74
USP54-215ENST00000497106 M0QZ58 72 aa4.17□□□□□ -1.74
USP54-215ENST00000497106 FAT3Q8TDW7 4589 aa4.16□□□□□ -1.74
USP54-215ENST00000497106 R4GN34 69 aa4.16□□□□□ -1.74
USP54-215ENST00000497106 H0YAA0 97 aa4.14□□□□□ -1.75
USP54-215ENST00000497106 CAMK2N1Q7Z7J9 78 aa4.12□□□□□ -1.75
USP54-215ENST00000497106 HERC2O95714 4834 aa4.11□□□□□ -1.75
USP54-215ENST00000497106 TNXBP22105 4242 aa4.11□□□□□ -1.75
USP54-215ENST00000497106 A0A0D9SG42 100 aa4.09□□□□□ -1.75
USP54-215ENST00000497106 EPPK1P58107 5090 aaKnown RBP4.09□□□□□ -1.76
USP54-215ENST00000497106 LRP1Q07954 4544 aaKnown RBP4.07□□□□□ -1.76
USP54-215ENST00000497106 KRTAP15-1Q3LI76 137 aa4.06□□□□□ -1.76
USP54-215ENST00000497106 PLAC4Q8WY50 150 aa4.06□□□□□ -1.76
USP54-215ENST00000497106 MYCBP2O75592 4640 aa4.04□□□□□ -1.76
USP54-215ENST00000497106 KRTAP3-3Q9BYR6 98 aa4.03□□□□□ -1.76
USP54-215ENST00000497106 KRTAP4-1Q9BYQ7 146 aa3.99□□□□□ -1.77
USP54-215ENST00000497106 KRTAP10-6P60371 365 aaPredicted RBP3.95□□□□□ -1.78
USP54-215ENST00000497106 ABCA13Q86UQ4 5058 aa3.94□□□□□ -1.78
USP54-215ENST00000497106 KRTAP10-10P60014 251 aa3.93□□□□□ -1.78
USP54-215ENST00000497106 MUC17Q685J3 4493 aa3.93□□□□□ -1.78
USP54-215ENST00000497106 KRTAP3-2Q9BYR7 98 aa3.92□□□□□ -1.78
USP54-215ENST00000497106 HERC1Q15751 4861 aa3.88□□□□□ -1.79
USP54-215ENST00000497106 PCLOQ9Y6V0 5065 aa3.88□□□□□ -1.79
USP54-215ENST00000497106 MT1HP80294 61 aa3.85□□□□□ -1.79
USP54-215ENST00000497106 KRTAP13-4Q3LI77 160 aa3.81□□□□□ -1.8
USP54-215ENST00000497106 KRTAP12-1P59990 96 aa3.8□□□□□ -1.8
USP54-215ENST00000497106 C10orf95Q9H7T3 257 aa3.79□□□□□ -1.8
USP54-215ENST00000497106 KRTAP19-2Q3LHN2 52 aa3.78□□□□□ -1.8
USP54-215ENST00000497106 PRO2289Q9P1D8 64 aa3.77□□□□□ -1.81
USP54-215ENST00000497106 LRP2P98164 4655 aa3.77□□□□□ -1.81
USP54-215ENST00000497106 KRTAP12-2P59991 146 aa3.77□□□□□ -1.81
USP54-215ENST00000497106 TNP1P09430 55 aa3.76□□□□□ -1.81
USP54-215ENST00000497106 LCE2CQ5TA81 110 aa3.76□□□□□ -1.81
USP54-215ENST00000497106 LPAP08519 4548 aa3.74□□□□□ -1.81
USP54-215ENST00000497106 HMCN2Q8NDA2 5059 aa3.73□□□□□ -1.81
USP54-215ENST00000497106 PP632Q6XCG6 107 aa3.72□□□□□ -1.81
USP54-215ENST00000497106 MT2AP02795 61 aa3.71□□□□□ -1.81
USP54-215ENST00000497106 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
USP54-215ENST00000497106 LORP23490 312 aaPredicted RBP3.68□□□□□ -1.82
USP54-215ENST00000497106 MT1FP04733 61 aa3.65□□□□□ -1.83
USP54-215ENST00000497106 FLGP20930 4061 aaPredicted RBP3.63□□□□□ -1.83
USP54-215ENST00000497106 KRTAP9-8Q9BYQ0 159 aa3.61□□□□□ -1.83
USP54-215ENST00000497106 KRTAP19-8Q3LI54 63 aa3.58□□□□□ -1.84
USP54-215ENST00000497106 KRTAP19-1Q8IUB9 90 aa3.56□□□□□ -1.84
USP54-215ENST00000497106 RNF213Q63HN8 5207 aa3.56□□□□□ -1.84
USP54-215ENST00000497106 KRTAP23-1A1A580 65 aa3.55□□□□□ -1.84
USP54-215ENST00000497106 LCE2AQ5TA79 106 aaPredicted RBP3.54□□□□□ -1.84
USP54-215ENST00000497106 KRTAP9-3Q9BYQ3 159 aa3.51□□□□□ -1.85
USP54-215ENST00000497106 INE1O15225 51 aa3.48□□□□□ -1.85
USP54-215ENST00000497106 FAT4Q6V0I7 4981 aa3.47□□□□□ -1.85
USP54-215ENST00000497106 MT1BP07438 61 aa3.44□□□□□ -1.86
USP54-215ENST00000497106 KRTAP10-12P60413 245 aa3.44□□□□□ -1.86
USP54-215ENST00000497106 UBR4Q5T4S7 5183 aa3.42□□□□□ -1.86
USP54-215ENST00000497106 KRTAP10-5P60370 271 aa3.38□□□□□ -1.87
USP54-215ENST00000497106 LCE2DQ5TA82 110 aaPredicted RBP3.38□□□□□ -1.87
USP54-215ENST00000497106 MT1XP80297 61 aa3.35□□□□□ -1.87
USP54-215ENST00000497106 LCE2BO14633 110 aa3.35□□□□□ -1.87
USP54-215ENST00000497106 LCE3AQ5TA76 89 aa3.33□□□□□ -1.88
USP54-215ENST00000497106 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
USP54-215ENST00000497106 MUC2Q02817 5179 aa3.28□□□□□ -1.88
USP54-215ENST00000497106 KRTAP19-6Q3LI70 58 aa3.27□□□□□ -1.89
USP54-215ENST00000497106 SPRR5A0A1B0GTR4 108 aa3.26□□□□□ -1.89
USP54-215ENST00000497106 KRTAP8-1Q8IUC2 63 aa3.25□□□□□ -1.89
USP54-215ENST00000497106 KRTAP19-4Q3LI73 84 aa3.25□□□□□ -1.89
USP54-215ENST00000497106 KRTAP10-7P60409 375 aaPredicted RBP3.22□□□□□ -1.89
USP54-215ENST00000497106 KRTAP9-2Q9BYQ4 174 aa3.17□□□□□ -1.9
USP54-215ENST00000497106 CRCT1Q9UGL9 99 aa3.15□□□□□ -1.91
USP54-215ENST00000497106 KRTAP19-5Q3LI72 72 aa3.14□□□□□ -1.91
USP54-215ENST00000497106 SPRR2FQ96RM1 72 aa3.04□□□□□ -1.92
USP54-215ENST00000497106 KRTAP4-8A0A0G2JLE6 195 aa3.03□□□□□ -1.92
USP54-215ENST00000497106 KRTAP4-8Q9BYQ9 185 aa3.03□□□□□ -1.92
USP54-215ENST00000497106 LCE3CQ5T5A8 94 aa3.02□□□□□ -1.93
USP54-215ENST00000497106 USH2AO75445 5202 aa3□□□□□ -1.93
USP54-215ENST00000497106 MT1EP04732 61 aa2.99□□□□□ -1.93
USP54-215ENST00000497106 KRTAP9-6A0A140TA67 174 aa2.99□□□□□ -1.93
USP54-215ENST00000497106 MT1GP13640 62 aa2.97□□□□□ -1.93
USP54-215ENST00000497106 KRTAP19-7Q3SYF9 63 aa2.94□□□□□ -1.94
USP54-215ENST00000497106 MT1LQ93083 61 aa2.94□□□□□ -1.94
USP54-215ENST00000497106 KRTAP19-3Q7Z4W3 81 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms