RNA–Protein interactions for RNA: ENST00000494248.1

PTPN12-212, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 470 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-212ENST00000494248 DEFB136Q30KP8 78 aa0.37□□□□□ -2.35
PTPN12-212ENST00000494248 KRTAP6-2Q3LI66 62 aa0.37□□□□□ -2.35
PTPN12-212ENST00000494248 FLNCQ14315 2725 aa0.37□□□□□ -2.35
PTPN12-212ENST00000494248 DMBT1Q9UGM3 2413 aaPredicted RBP0.37□□□□□ -2.35
PTPN12-212ENST00000494248 KMT2CQ8NEZ4 4911 aaKnown RBP0.37□□□□□ -2.35
PTPN12-212ENST00000494248 HYDINQ4G0P3 5121 aa0.37□□□□□ -2.35
PTPN12-212ENST00000494248 CENPFP49454 3210 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 PLECQ15149 4684 aaKnown RBP0.36□□□□□ -2.35
PTPN12-212ENST00000494248 NSD1Q96L73 2696 aaPredicted RBP0.36□□□□□ -2.35
PTPN12-212ENST00000494248 DNAH7Q8WXX0 4024 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 DMXL1Q9Y485 3027 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 ACANP16112 2415 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 GCN1Q92616 2671 aaKnown RBP0.36□□□□□ -2.35
PTPN12-212ENST00000494248 DCHS2Q6V1P9 2916 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 LAMA3Q16787 3333 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 COL12A1Q99715 3063 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 APC2O95996 2303 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 ZZEF1O43149 2961 aa0.36□□□□□ -2.35
PTPN12-212ENST00000494248 LAMA2P24043 3122 aaKnown RBP0.35□□□□□ -2.35
PTPN12-212ENST00000494248 MGAQ8IWI9 3026 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 HIVEP3Q5T1R4 2406 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 KRTAP19-5Q3LI72 72 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 COL7A1Q02388 2944 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 BOD1L1Q8NFC6 3051 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 VCANP13611 3396 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 HERC1Q15751 4861 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 MUC3AQ02505 3323 aa0.35□□□□□ -2.35
PTPN12-212ENST00000494248 FLGP20930 4061 aaPredicted RBP0.34□□□□□ -2.35
PTPN12-212ENST00000494248 DYNC1H1Q14204 4646 aaKnown RBP0.34□□□□□ -2.35
PTPN12-212ENST00000494248 FAT4Q6V0I7 4981 aa0.34□□□□□ -2.35
PTPN12-212ENST00000494248 MAP1BP46821 2468 aaKnown RBP0.34□□□□□ -2.36
PTPN12-212ENST00000494248 PTPN13Q12923 2485 aa0.34□□□□□ -2.36
PTPN12-212ENST00000494248 SPRR2FQ96RM1 72 aa0.34□□□□□ -2.36
PTPN12-212ENST00000494248 CSMD1Q96PZ7 3565 aa0.34□□□□□ -2.36
PTPN12-212ENST00000494248 ITPR3Q14573 2671 aa0.34□□□□□ -2.36
PTPN12-212ENST00000494248 SETXQ7Z333 2677 aaKnown RBP0.34□□□□□ -2.36
PTPN12-212ENST00000494248 NBASA2RRP1 2371 aa0.34□□□□□ -2.36
PTPN12-212ENST00000494248 RYR2Q92736 4967 aa0.34□□□□□ -2.36
PTPN12-212ENST00000494248 CCDC168Q8NDH2 2452 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 SPTBN4Q9H254 2564 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 CFAP54Q96N23 3096 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 SSPOA2VEC9 5147 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 SPRR2EP22531 72 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 RPS29P62273 56 aaKnown RBP0.33□□□□□ -2.36
PTPN12-212ENST00000494248 SZT2Q5T011 3432 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 SPEGQ15772 3267 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 USP34Q70CQ2 3546 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 HERC2O95714 4834 aa0.33□□□□□ -2.36
PTPN12-212ENST00000494248 DNAH17Q9UFH2 4485 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 ABCA13Q86UQ4 5058 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 HRNRQ86YZ3 2850 aaPredicted RBP0.32□□□□□ -2.36
PTPN12-212ENST00000494248 ACACAQ13085 2346 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 MKI67P46013 3256 aaKnown RBP0.32□□□□□ -2.36
PTPN12-212ENST00000494248 BIRC6Q9NR09 4857 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 WDFY4Q6ZS81 3184 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 DEFB133Q30KQ1 61 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 HTTP42858 3142 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 MTORP42345 2549 aa0.32□□□□□ -2.36
PTPN12-212ENST00000494248 SMG1Q96Q15 3661 aaKnown RBP0.32□□□□□ -2.36
PTPN12-212ENST00000494248 SONP18583 2426 aaKnown RBP0.32□□□□□ -2.36
PTPN12-212ENST00000494248 ANKRD11Q6UB99 2663 aaPredicted RBP0.31□□□□□ -2.36
PTPN12-212ENST00000494248 SYNE2Q8WXH0 6885 aaKnown RBP0.31□□□□□ -2.36
PTPN12-212ENST00000494248 PKHD1P08F94 4074 aa0.31□□□□□ -2.36
PTPN12-212ENST00000494248 USP9YO00507 2555 aaPredicted RBP0.31□□□□□ -2.36
PTPN12-212ENST00000494248 SVEP1Q4LDE5 3571 aa0.31□□□□□ -2.36
PTPN12-212ENST00000494248 CMYA5Q8N3K9 4069 aa0.31□□□□□ -2.36
PTPN12-212ENST00000494248 GOLGB1Q14789 3259 aaKnown RBP0.31□□□□□ -2.36
PTPN12-212ENST00000494248 NIPBLQ6KC79 2804 aaeCLIP0.31□□□□□ -2.36
PTPN12-212ENST00000494248 FLNBO75369 2602 aaKnown RBP0.31□□□□□ -2.36
PTPN12-212ENST00000494248 KALRNO60229 2985 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 UNC80Q8N2C7 3258 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 DNAH5Q8TE73 4624 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 CFAP47Q6ZTR5 3102 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 Q9Y3F1 56 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 DMXL2Q8TDJ6 3036 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 ZFYVE26Q68DK2 2539 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 ZANQ9Y493 2812 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 UTRNP46939 3433 aa0.3□□□□□ -2.36
PTPN12-212ENST00000494248 FRYLO94915 3013 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 HIVEP1P15822 2718 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 STATHP02808 62 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 LINC01556Q5JQF7 62 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 ACACBO00763 2458 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 EPG5Q9HCE0 2579 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 BRCA2P51587 3418 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 MAST4O15021 2626 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 ASPMQ8IZT6 3477 aa0.29□□□□□ -2.36
PTPN12-212ENST00000494248 HMCN2Q8NDA2 5059 aa0.28□□□□□ -2.36
PTPN12-212ENST00000494248 TRRAPQ9Y4A5 3859 aa0.28□□□□□ -2.36
PTPN12-212ENST00000494248 PRUNE2Q8WUY3 3088 aa0.28□□□□□ -2.36
PTPN12-212ENST00000494248 DCHS1Q96JQ0 3298 aa0.28□□□□□ -2.36
PTPN12-212ENST00000494248 UTP20O75691 2785 aaKnown RBP0.28□□□□□ -2.36
PTPN12-212ENST00000494248 NBEAQ8NFP9 2946 aa0.28□□□□□ -2.36
PTPN12-212ENST00000494248 FSIP2Q5CZC0 6907 aa0.28□□□□□ -2.36
PTPN12-212ENST00000494248 EP400Q96L91 3159 aa0.28□□□□□ -2.37
PTPN12-212ENST00000494248 NEBP20929 6669 aa0.28□□□□□ -2.37
PTPN12-212ENST00000494248 NBEAL2Q6ZNJ1 2754 aa0.28□□□□□ -2.37
PTPN12-212ENST00000494248 WDFY3Q8IZQ1 3526 aa0.27□□□□□ -2.37
PTPN12-212ENST00000494248 FAM186AA6NE01 2351 aa0.27□□□□□ -2.37
PTPN12-212ENST00000494248 ATMQ13315 3056 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms