RNA–Protein interactions for RNA: ENST00000494248.1

PTPN12-212, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 470 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-212ENST00000494248 AEBP2Q6ZN18 517 aaPredicted RBP22.34■■□□□ 1.17
PTPN12-212ENST00000494248 CHIC1Q5VXU3 224 aa20.81■□□□□ 0.92
PTPN12-212ENST00000494248 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
PTPN12-212ENST00000494248 SENP3Q9H4L4 574 aaPredicted RBP19.26■□□□□ 0.67
PTPN12-212ENST00000494248 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
PTPN12-212ENST00000494248 FOXD1Q16676 465 aa18.13■□□□□ 0.49
PTPN12-212ENST00000494248 MSH5O43196 834 aa17.51■□□□□ 0.39
PTPN12-212ENST00000494248 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
PTPN12-212ENST00000494248 CACNB1Q02641 598 aaPredicted RBP15.89■□□□□ 0.13
PTPN12-212ENST00000494248 PPP6R1Q9UPN7 881 aa15.85■□□□□ 0.13
PTPN12-212ENST00000494248 ADRA2BP18089 450 aa15.69■□□□□ 0.1
PTPN12-212ENST00000494248 PLPPR3Q6T4P5 718 aa15.15■□□□□ 0.02
PTPN12-212ENST00000494248 DMRT2Q9Y5R5 561 aa15.06■□□□□ 0
PTPN12-212ENST00000494248 POTEHQ6S545 545 aa15.03■□□□□ -0
PTPN12-212ENST00000494248 MAPK8IP2Q13387 824 aaPredicted RBP14.85□□□□□ -0.03
PTPN12-212ENST00000494248 RNF39Q9H2S5 420 aa14.83□□□□□ -0.04
PTPN12-212ENST00000494248 C1QBPQ07021 282 aaKnown RBP14.5□□□□□ -0.09
PTPN12-212ENST00000494248 DCAF8L1A6NGE4 600 aa14.46□□□□□ -0.09
PTPN12-212ENST00000494248 SCAF1Q9H7N4 1312 aaKnown RBP14.34□□□□□ -0.11
PTPN12-212ENST00000494248 HOXD11P31277 338 aaPredicted RBP13.94□□□□□ -0.18
PTPN12-212ENST00000494248 DNAJC5BQ9UF47 199 aa13.75□□□□□ -0.21
PTPN12-212ENST00000494248 RNF216Q9NWF9 866 aaPredicted RBP13.44□□□□□ -0.26
PTPN12-212ENST00000494248 SP7Q8TDD2 431 aaPredicted RBP13.42□□□□□ -0.26
PTPN12-212ENST00000494248 DSG3P32926 999 aa13.39□□□□□ -0.27
PTPN12-212ENST00000494248 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.24□□□□□ -0.291e-6■□□□□ 10.5
PTPN12-212ENST00000494248 CNKSR2Q8WXI2 1034 aa13.18□□□□□ -0.3
PTPN12-212ENST00000494248 CAPN15O75808 1086 aa13.1□□□□□ -0.31
PTPN12-212ENST00000494248 CHRDL2Q6WN34 429 aa13.1□□□□□ -0.31
PTPN12-212ENST00000494248 PPP4R3CPQ6ZMV5 832 aa13.1□□□□□ -0.31
PTPN12-212ENST00000494248 SPINK5Q9NQ38 1064 aaPredicted RBP13.08□□□□□ -0.32
PTPN12-212ENST00000494248 PLSCR2Q9NRY7 297 aa12.96□□□□□ -0.33
PTPN12-212ENST00000494248 U3KPZ7 1027 aaPredicted RBP12.84□□□□□ -0.35
PTPN12-212ENST00000494248 RBM42Q9BTD8 480 aaKnown RBP12.8□□□□□ -0.36
PTPN12-212ENST00000494248 ABCB7O75027 752 aa12.68□□□□□ -0.38
PTPN12-212ENST00000494248 HAX1O00165 279 aa12.61□□□□□ -0.39
PTPN12-212ENST00000494248 LHX8Q68G74 356 aa12.54□□□□□ -0.4
PTPN12-212ENST00000494248 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
PTPN12-212ENST00000494248 PIP4P2Q8N4L2 257 aa12.49□□□□□ -0.41
PTPN12-212ENST00000494248 ZNF219Q9P2Y4 722 aaPredicted RBP12.48□□□□□ -0.41
PTPN12-212ENST00000494248 EVX2Q03828 476 aa12.38□□□□□ -0.43
PTPN12-212ENST00000494248 NCBP3Q53F19 620 aaKnown RBP12.33□□□□□ -0.44
PTPN12-212ENST00000494248 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
PTPN12-212ENST00000494248 APLP2Q06481 763 aa12.29□□□□□ -0.44
PTPN12-212ENST00000494248 AKT1S1Q96B36 256 aa12.2□□□□□ -0.46
PTPN12-212ENST00000494248 FXR2P51116 673 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPN12-212ENST00000494248 REM2Q8IYK8 340 aaPredicted RBP12.09□□□□□ -0.47
PTPN12-212ENST00000494248 GABBR2O75899 941 aa12.01□□□□□ -0.49
PTPN12-212ENST00000494248 PITPNM1O00562 1244 aa12□□□□□ -0.49
PTPN12-212ENST00000494248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.93□□□□□ -0.5
PTPN12-212ENST00000494248 HNRNPUL2Q1KMD3 747 aaKnown RBP11.93□□□□□ -0.5
PTPN12-212ENST00000494248 POTEMA6NI47 508 aa11.91□□□□□ -0.5
PTPN12-212ENST00000494248 SLC4A2P04920 1241 aa11.91□□□□□ -0.5
PTPN12-212ENST00000494248 POLA2Q14181 598 aa11.88□□□□□ -0.51
PTPN12-212ENST00000494248 C19orf67A6NJJ6 358 aa11.85□□□□□ -0.51
PTPN12-212ENST00000494248 SAMD1Q6SPF0 538 aaPredicted RBP11.82□□□□□ -0.52
PTPN12-212ENST00000494248 POTEGQ6S5H5 508 aa11.81□□□□□ -0.52
PTPN12-212ENST00000494248 POTEIP0CG38 1075 aa11.77□□□□□ -0.53
PTPN12-212ENST00000494248 PCDH10Q9P2E7 1040 aa11.77□□□□□ -0.53
PTPN12-212ENST00000494248 KCNA4P22459 653 aa11.71□□□□□ -0.53
PTPN12-212ENST00000494248 PRKAR2AP13861 404 aaKnown RBP11.65□□□□□ -0.54
PTPN12-212ENST00000494248 OTUD5Q96G74 571 aa11.6□□□□□ -0.55
PTPN12-212ENST00000494248 OSCARQ8IYS5 282 aa11.59□□□□□ -0.55
PTPN12-212ENST00000494248 ZBTB12Q9Y330 459 aaPredicted RBP11.53□□□□□ -0.56
PTPN12-212ENST00000494248 DCBLD2Q96PD2 775 aa11.36□□□□□ -0.59
PTPN12-212ENST00000494248 POTEB2H3BUK9 544 aa11.35□□□□□ -0.59
PTPN12-212ENST00000494248 CLCN6P51797 869 aa11.31□□□□□ -0.6
PTPN12-212ENST00000494248 MYCNP04198 464 aaPredicted RBP11.29□□□□□ -0.6
PTPN12-212ENST00000494248 LCE2DQ5TA82 110 aaPredicted RBP11.29□□□□□ -0.6
PTPN12-212ENST00000494248 CLEC11AQ9Y240 323 aa11.25□□□□□ -0.61
PTPN12-212ENST00000494248 ATF5Q9Y2D1 282 aaPredicted RBP11.24□□□□□ -0.61
PTPN12-212ENST00000494248 CHADLQ6NUI6 762 aa11.22□□□□□ -0.61
PTPN12-212ENST00000494248 SPDYE1Q8NFV5 336 aaPredicted RBP11.21□□□□□ -0.61
PTPN12-212ENST00000494248 CD44P16070 742 aaKnown RBP11.2□□□□□ -0.62
PTPN12-212ENST00000494248 FAM163AQ96GL9 167 aaPredicted RBP11.08□□□□□ -0.64
PTPN12-212ENST00000494248 SPDYE2BA6NHP3 402 aa11.07□□□□□ -0.64
PTPN12-212ENST00000494248 SPDYE6P0CI01 402 aa11.07□□□□□ -0.64
PTPN12-212ENST00000494248 SPDYE2Q495Y8 402 aa11.07□□□□□ -0.64
PTPN12-212ENST00000494248 CDAN1Q8IWY9 1227 aa11.05□□□□□ -0.64
PTPN12-212ENST00000494248 ZNF579Q8NAF0 562 aaKnown RBP10.98□□□□□ -0.65
PTPN12-212ENST00000494248 FOXD4L1Q9NU39 408 aa10.97□□□□□ -0.65
PTPN12-212ENST00000494248 POTEJP0CG39 1038 aa10.95□□□□□ -0.66
PTPN12-212ENST00000494248 MMRN1Q13201 1228 aa10.95□□□□□ -0.66
PTPN12-212ENST00000494248 GALR2O43603 387 aaPredicted RBP10.94□□□□□ -0.66
PTPN12-212ENST00000494248 MAMSTRQ6ZN01 415 aa10.91□□□□□ -0.66
PTPN12-212ENST00000494248 FARP1Q9Y4F1 1045 aaPredicted RBP10.9□□□□□ -0.66
PTPN12-212ENST00000494248 SLC4A1APQ9BWU0 796 aaKnown RBP10.88□□□□□ -0.67
PTPN12-212ENST00000494248 PRR29P0C7W0 189 aa10.86□□□□□ -0.67
PTPN12-212ENST00000494248 PELP1Q8IZL8 1130 aaKnown RBP10.86□□□□□ -0.67
PTPN12-212ENST00000494248 ZBTB22O15209 634 aa10.83□□□□□ -0.68
PTPN12-212ENST00000494248 SPNS2Q8IVW8 549 aa10.82□□□□□ -0.68
PTPN12-212ENST00000494248 ZRANB1Q9UGI0 708 aa10.81□□□□□ -0.68
PTPN12-212ENST00000494248 METRNQ9UJH8 293 aa10.8□□□□□ -0.68
PTPN12-212ENST00000494248 SSUH2Q9Y2M2 353 aa10.78□□□□□ -0.68
PTPN12-212ENST00000494248 SCUBE2Q9NQ36 999 aa10.77□□□□□ -0.69
PTPN12-212ENST00000494248 C7P10643 843 aa10.69□□□□□ -0.7
PTPN12-212ENST00000494248 SLC39A7Q92504 469 aa10.69□□□□□ -0.7
PTPN12-212ENST00000494248 MKRN4PQ13434 485 aaPredicted RBP10.68□□□□□ -0.7
PTPN12-212ENST00000494248 ZNF692Q9BU19 519 aaPredicted RBP10.67□□□□□ -0.7
PTPN12-212ENST00000494248 ATXN8OSP0DMR3 200 aa10.63□□□□□ -0.71
PTPN12-212ENST00000494248 FBLN2P98095 1184 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms