RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 A6NN06 94 aa5.33□□□□□ -1.56
COL6A3-213ENST00000493475 C5orf47Q569G3 176 aa5.33□□□□□ -1.56
COL6A3-213ENST00000493475 Q5W150 140 aa5.33□□□□□ -1.56
COL6A3-213ENST00000493475 CSAG1Q6PB30 78 aa5.33□□□□□ -1.56
COL6A3-213ENST00000493475 NEBP20929 6669 aa5.33□□□□□ -1.56
COL6A3-213ENST00000493475 S4R3F8 94 aa5.32□□□□□ -1.56
COL6A3-213ENST00000493475 Q5VV11 94 aa5.31□□□□□ -1.56
COL6A3-213ENST00000493475 UBL5Q9BZL1 73 aa5.31□□□□□ -1.56
COL6A3-213ENST00000493475 Q8N9L7 120 aa5.29□□□□□ -1.56
COL6A3-213ENST00000493475 C1orf64Q8NEQ6 169 aa5.27□□□□□ -1.57
COL6A3-213ENST00000493475 TP53AIP1Q9HCN2 124 aa5.26□□□□□ -1.57
COL6A3-213ENST00000493475 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.22□□□□□ -1.57
COL6A3-213ENST00000493475 LCA10Q71F78 164 aa5.22□□□□□ -1.57
COL6A3-213ENST00000493475 SPRR2GQ9BYE4 73 aa5.22□□□□□ -1.57
COL6A3-213ENST00000493475 IMUPQ9GZP8 106 aa5.22□□□□□ -1.57
COL6A3-213ENST00000493475 ACYP1P07311 99 aa5.21□□□□□ -1.58
COL6A3-213ENST00000493475 KLKP1Q107X0 134 aa5.2□□□□□ -1.58
COL6A3-213ENST00000493475 CRIPTQ9P021 101 aa5.2□□□□□ -1.58
COL6A3-213ENST00000493475 FAM240AA0A1B0GVK7 77 aa5.19□□□□□ -1.58
COL6A3-213ENST00000493475 KRTAP19-8Q3LI54 63 aa5.19□□□□□ -1.58
COL6A3-213ENST00000493475 J3QR89 54 aa5.17□□□□□ -1.58
COL6A3-213ENST00000493475 K7ERU9 68 aa5.17□□□□□ -1.58
COL6A3-213ENST00000493475 MT1BP07438 61 aa5.17□□□□□ -1.58
COL6A3-213ENST00000493475 KRTAP10-5P60370 271 aa5.15□□□□□ -1.59
COL6A3-213ENST00000493475 MUC12Q9UKN1 5478 aa5.14□□□□□ -1.59
COL6A3-213ENST00000493475 KRTAP20-1Q3LI63 56 aa5.13□□□□□ -1.59
COL6A3-213ENST00000493475 LOC101927531A0A1B0GV80 90 aa5.11□□□□□ -1.59
COL6A3-213ENST00000493475 LINC00643Q86TS7 51 aa5.09□□□□□ -1.59
COL6A3-213ENST00000493475 CYP4F30PQ9H0H9 118 aa5.09□□□□□ -1.59
COL6A3-213ENST00000493475 TRAV22A0A0B4J277 110 aa5.08□□□□□ -1.6
COL6A3-213ENST00000493475 NDUFC1O43677 76 aa5.08□□□□□ -1.6
COL6A3-213ENST00000493475 ATP5EP2Q5VTU8 51 aa5.08□□□□□ -1.6
COL6A3-213ENST00000493475 KRTAP5-9P26371 169 aa5.07□□□□□ -1.6
COL6A3-213ENST00000493475 KRTAP23-1A1A580 65 aa5.06□□□□□ -1.6
COL6A3-213ENST00000493475 KRTAP5-11Q6L8G4 156 aa5.06□□□□□ -1.6
COL6A3-213ENST00000493475 PRO2289Q9P1D8 64 aa5.06□□□□□ -1.6
COL6A3-213ENST00000493475 ATOX1O00244 68 aa5.04□□□□□ -1.6
COL6A3-213ENST00000493475 HIST1H4AP62805 103 aaKnown RBP5.04□□□□□ -1.6
COL6A3-213ENST00000493475 H0YAA0 97 aa5.03□□□□□ -1.6
COL6A3-213ENST00000493475 KMT2DO14686 5537 aa5.02□□□□□ -1.61
COL6A3-213ENST00000493475 MDN1Q9NU22 5596 aa5.02□□□□□ -1.61
COL6A3-213ENST00000493475 A8MUN3 132 aa5□□□□□ -1.61
COL6A3-213ENST00000493475 KRTAP10-7P60409 375 aaPredicted RBP5□□□□□ -1.61
COL6A3-213ENST00000493475 UQCRQO14949 82 aa4.99□□□□□ -1.61
COL6A3-213ENST00000493475 LCE1AQ5T7P2 110 aa4.99□□□□□ -1.61
COL6A3-213ENST00000493475 A0A087WVE0 104 aa4.98□□□□□ -1.61
COL6A3-213ENST00000493475 PLAC4Q8WY50 150 aa4.98□□□□□ -1.61
COL6A3-213ENST00000493475 MT-ATP8P03928 68 aa4.97□□□□□ -1.61
COL6A3-213ENST00000493475 H0Y9P7 68 aa4.96□□□□□ -1.62
COL6A3-213ENST00000493475 SCGB1A1P11684 91 aa4.96□□□□□ -1.62
COL6A3-213ENST00000493475 C20orf197Q8N268 126 aa4.96□□□□□ -1.62
COL6A3-213ENST00000493475 KRTAP2-3P0C7H8 128 aa4.95□□□□□ -1.62
COL6A3-213ENST00000493475 ADM2Q7Z4H4 148 aa4.95□□□□□ -1.62
COL6A3-213ENST00000493475 KRTAP2-4Q9BYR9 128 aa4.95□□□□□ -1.62
COL6A3-213ENST00000493475 SPRR2FQ96RM1 72 aa4.93□□□□□ -1.62
COL6A3-213ENST00000493475 PCP4P48539 62 aa4.92□□□□□ -1.62
COL6A3-213ENST00000493475 R4GN34 69 aa4.92□□□□□ -1.62
COL6A3-213ENST00000493475 SPRR2EP22531 72 aa4.9□□□□□ -1.63
COL6A3-213ENST00000493475 SPRR2BP35325 72 aa4.9□□□□□ -1.63
COL6A3-213ENST00000493475 SPRR2AP35326 72 aa4.9□□□□□ -1.63
COL6A3-213ENST00000493475 SVIPQ8NHG7 77 aa4.9□□□□□ -1.63
COL6A3-213ENST00000493475 MP68P56378 58 aa4.89□□□□□ -1.63
COL6A3-213ENST00000493475 KRTAP8-1Q8IUC2 63 aa4.88□□□□□ -1.63
COL6A3-213ENST00000493475 LINC00208Q96KT6 92 aa4.86□□□□□ -1.63
COL6A3-213ENST00000493475 OCR1Q9BZK8 76 aa4.86□□□□□ -1.63
COL6A3-213ENST00000493475 M0QZ58 72 aa4.83□□□□□ -1.64
COL6A3-213ENST00000493475 MT1XP80297 61 aa4.82□□□□□ -1.64
COL6A3-213ENST00000493475 KRTAP12-2P59991 146 aa4.81□□□□□ -1.64
COL6A3-213ENST00000493475 SMIM20Q8N5G0 67 aa4.8□□□□□ -1.64
COL6A3-213ENST00000493475 TRAV7A0A075B6U4 112 aa4.79□□□□□ -1.64
COL6A3-213ENST00000493475 H3BPC8 53 aa4.78□□□□□ -1.64
COL6A3-213ENST00000493475 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
COL6A3-213ENST00000493475 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
COL6A3-213ENST00000493475 LINC01554Q52M75 96 aa4.77□□□□□ -1.65
COL6A3-213ENST00000493475 SPRR2DP22532 72 aa4.75□□□□□ -1.65
COL6A3-213ENST00000493475 P0C880 135 aa4.74□□□□□ -1.65
COL6A3-213ENST00000493475 ANAPC13Q9BS18 74 aa4.74□□□□□ -1.65
COL6A3-213ENST00000493475 SERP2Q8N6R1 65 aa4.73□□□□□ -1.65
COL6A3-213ENST00000493475 DMAC1Q96GE9 116 aa4.72□□□□□ -1.65
COL6A3-213ENST00000493475 SPTSSBQ8NFR3 76 aa4.71□□□□□ -1.66
COL6A3-213ENST00000493475 COX7CP15954 63 aa4.67□□□□□ -1.66
COL6A3-213ENST00000493475 SNURFQ9Y675 71 aa4.66□□□□□ -1.66
COL6A3-213ENST00000493475 CCDC179H3BU77 68 aa4.64□□□□□ -1.67
COL6A3-213ENST00000493475 ACYP2P14621 99 aa4.64□□□□□ -1.67
COL6A3-213ENST00000493475 LCE1EQ5T753 118 aa4.64□□□□□ -1.67
COL6A3-213ENST00000493475 CHKB-CPT1BH3BT56 60 aa4.61□□□□□ -1.67
COL6A3-213ENST00000493475 KRTAP10-12P60413 245 aa4.61□□□□□ -1.67
COL6A3-213ENST00000493475 SPANXA2-OT1Q8N9U9 137 aa4.55□□□□□ -1.68
COL6A3-213ENST00000493475 CYSTM1Q9H1C7 97 aa4.54□□□□□ -1.68
COL6A3-213ENST00000493475 H7BZZ5 65 aa4.52□□□□□ -1.69
COL6A3-213ENST00000493475 TMEM258P61165 79 aa4.52□□□□□ -1.69
COL6A3-213ENST00000493475 CAMK2N1Q7Z7J9 78 aa4.52□□□□□ -1.69
COL6A3-213ENST00000493475 KRTAP5-1Q6L8H4 278 aa4.49□□□□□ -1.69
COL6A3-213ENST00000493475 GPR98Q8WXG9 6306 aa4.47□□□□□ -1.69
COL6A3-213ENST00000493475 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
COL6A3-213ENST00000493475 ATP5EP56381 51 aaPredicted RBP4.43□□□□□ -1.7
COL6A3-213ENST00000493475 RPS28P62857 69 aaKnown RBP4.42□□□□□ -1.7
COL6A3-213ENST00000493475 COA5Q86WW8 74 aa4.41□□□□□ -1.7
COL6A3-213ENST00000493475 SEC61GP60059 68 aa4.4□□□□□ -1.71
COL6A3-213ENST00000493475 KRTAP5-4Q6L8H1 288 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms