RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 PCOTHQ58A44 107 aa7.38□□□□□ -1.23
HDAC3-213ENST00000492506 LCE2CQ5TA81 110 aa7.38□□□□□ -1.23
HDAC3-213ENST00000492506 PRAC1Q96KF2 57 aa7.35□□□□□ -1.23
HDAC3-213ENST00000492506 UQCR11O14957 56 aa7.33□□□□□ -1.24
HDAC3-213ENST00000492506 SEC61BP60468 96 aaKnown RBP7.33□□□□□ -1.24
HDAC3-213ENST00000492506 C8orf17Q9NRJ1 99 aa7.33□□□□□ -1.24
HDAC3-213ENST00000492506 A0A1B0GU69 56 aa7.32□□□□□ -1.24
HDAC3-213ENST00000492506 KRTAP19-2Q3LHN2 52 aa7.32□□□□□ -1.24
HDAC3-213ENST00000492506 MIR22HGQ0VDD5 57 aa7.3□□□□□ -1.24
HDAC3-213ENST00000492506 MRPL34Q9BQ48 92 aaKnown RBP7.3□□□□□ -1.24
HDAC3-213ENST00000492506 MT1HP80294 61 aa7.28□□□□□ -1.24
HDAC3-213ENST00000492506 A0A1B0GVX0 72 aa7.27□□□□□ -1.25
HDAC3-213ENST00000492506 DMAC1Q96GE9 116 aa7.26□□□□□ -1.25
HDAC3-213ENST00000492506 XP32Q5T750 250 aa7.25□□□□□ -1.25
HDAC3-213ENST00000492506 SPINK1P00995 79 aa7.24□□□□□ -1.25
HDAC3-213ENST00000492506 LORP23490 312 aaPredicted RBP7.23□□□□□ -1.25
HDAC3-213ENST00000492506 ADM2Q7Z4H4 148 aa7.2□□□□□ -1.26
HDAC3-213ENST00000492506 ZNF706Q9Y5V0 76 aaPredicted RBP7.2□□□□□ -1.26
HDAC3-213ENST00000492506 KRTAP10-6P60371 365 aaPredicted RBP7.19□□□□□ -1.26
HDAC3-213ENST00000492506 RPS29P62273 56 aaKnown RBP7.19□□□□□ -1.26
HDAC3-213ENST00000492506 CSAG1Q6PB30 78 aa7.19□□□□□ -1.26
HDAC3-213ENST00000492506 IGHV6-1A0A0B4J1U7 121 aa7.18□□□□□ -1.26
HDAC3-213ENST00000492506 LINC00483Q53H64 154 aa7.18□□□□□ -1.26
HDAC3-213ENST00000492506 Q96NJ1 140 aa7.18□□□□□ -1.26
HDAC3-213ENST00000492506 FLGP20930 4061 aaPredicted RBP7.18□□□□□ -1.26
HDAC3-213ENST00000492506 A0A0G2JQZ4 141 aa7.17□□□□□ -1.26
HDAC3-213ENST00000492506 NOTCH2NLQ7Z3S9 236 aa7.13□□□□□ -1.27
HDAC3-213ENST00000492506 SSBP3-AS1Q7Z2R9 100 aa7.12□□□□□ -1.27
HDAC3-213ENST00000492506 IGLV9-49A0A0B4J1Y8 123 aa7.1□□□□□ -1.27
HDAC3-213ENST00000492506 KRTAP9-7A8MTY7 169 aa7.1□□□□□ -1.27
HDAC3-213ENST00000492506 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.08□□□□□ -1.28
HDAC3-213ENST00000492506 ROMO1P60602 79 aa7.08□□□□□ -1.28
HDAC3-213ENST00000492506 KRTAP25-1Q3LHN0 102 aa7.07□□□□□ -1.28
HDAC3-213ENST00000492506 M0R2T5 61 aa7.03□□□□□ -1.28
HDAC3-213ENST00000492506 SSPOA2VEC9 5147 aa7.03□□□□□ -1.28
HDAC3-213ENST00000492506 IGKV2-30P06310 120 aa7.02□□□□□ -1.29
HDAC3-213ENST00000492506 C9orf92A6NGG3 77 aa7.01□□□□□ -1.29
HDAC3-213ENST00000492506 USH2AO75445 5202 aa6.99□□□□□ -1.29
HDAC3-213ENST00000492506 Q5W150 140 aa6.98□□□□□ -1.29
HDAC3-213ENST00000492506 A8MUU9 505 aa6.96□□□□□ -1.3
HDAC3-213ENST00000492506 K7ERS5 55 aa6.93□□□□□ -1.3
HDAC3-213ENST00000492506 COX6B2Q6YFQ2 88 aa6.93□□□□□ -1.3
HDAC3-213ENST00000492506 IGKV2D-30A0A075B6S6 120 aa6.92□□□□□ -1.3
HDAC3-213ENST00000492506 FCGBPQ9Y6R7 5405 aaPredicted RBP6.91□□□□□ -1.3
HDAC3-213ENST00000492506 RPL37P61927 97 aaKnown RBP6.9□□□□□ -1.3
HDAC3-213ENST00000492506 KRTAP9-8Q9BYQ0 159 aa6.85□□□□□ -1.31
HDAC3-213ENST00000492506 SYNE2Q8WXH0 6885 aaKnown RBP6.78□□□□□ -1.32
HDAC3-213ENST00000492506 MACF1Q9UPN3 7388 aaKnown RBP6.78□□□□□ -1.32
HDAC3-213ENST00000492506 A0A1B0GU33 70 aa6.75□□□□□ -1.33
HDAC3-213ENST00000492506 H0YAA0 97 aa6.75□□□□□ -1.33
HDAC3-213ENST00000492506 KRTAP19-1Q8IUB9 90 aa6.75□□□□□ -1.33
HDAC3-213ENST00000492506 H1FX-AS1Q4G0G2 97 aa6.73□□□□□ -1.33
HDAC3-213ENST00000492506 LCE2BO14633 110 aa6.71□□□□□ -1.34
HDAC3-213ENST00000492506 P0C880 135 aa6.7□□□□□ -1.34
HDAC3-213ENST00000492506 KRTAP16-1A8MUX0 517 aa6.69□□□□□ -1.34
HDAC3-213ENST00000492506 MT2AP02795 61 aa6.68□□□□□ -1.34
HDAC3-213ENST00000492506 SPINT4Q6UDR6 99 aa6.65□□□□□ -1.34
HDAC3-213ENST00000492506 MT1FP04733 61 aa6.64□□□□□ -1.35
HDAC3-213ENST00000492506 KRTAP9-3Q9BYQ3 159 aa6.64□□□□□ -1.35
HDAC3-213ENST00000492506 C20orf166-AS1Q96NR2 134 aa6.62□□□□□ -1.35
HDAC3-213ENST00000492506 A0A0A0MQY5 61 aa6.56□□□□□ -1.36
HDAC3-213ENST00000492506 KRTAP10-10P60014 251 aa6.53□□□□□ -1.36
HDAC3-213ENST00000492506 KRTAP15-1Q3LI76 137 aa6.53□□□□□ -1.36
HDAC3-213ENST00000492506 KRTAP19-6Q3LI70 58 aa6.52□□□□□ -1.37
HDAC3-213ENST00000492506 NDUFAF8A1L188 74 aa6.49□□□□□ -1.37
HDAC3-213ENST00000492506 KRTAP6-3Q3LI67 103 aa6.47□□□□□ -1.37
HDAC3-213ENST00000492506 CRIPTQ9P021 101 aa6.46□□□□□ -1.38
HDAC3-213ENST00000492506 NEBP20929 6669 aa6.4□□□□□ -1.38
HDAC3-213ENST00000492506 LUZP6Q538Z0 58 aa6.31□□□□□ -1.4
HDAC3-213ENST00000492506 MUC12Q9UKN1 5478 aa6.3□□□□□ -1.4
HDAC3-213ENST00000492506 KRTAP3-1Q9BYR8 98 aa6.27□□□□□ -1.41
HDAC3-213ENST00000492506 S4R3F8 94 aa6.2□□□□□ -1.42
HDAC3-213ENST00000492506 KRTAP20-1Q3LI63 56 aa6.17□□□□□ -1.42
HDAC3-213ENST00000492506 C10orf95Q9H7T3 257 aa6.15□□□□□ -1.42
HDAC3-213ENST00000492506 A0A0D9SG42 100 aa6.12□□□□□ -1.43
HDAC3-213ENST00000492506 KRTAP13-4Q3LI77 160 aa6.09□□□□□ -1.43
HDAC3-213ENST00000492506 KRTAP3-2Q9BYR7 98 aa6.08□□□□□ -1.44
HDAC3-213ENST00000492506 M0QZ58 72 aa6.07□□□□□ -1.44
HDAC3-213ENST00000492506 MDN1Q9NU22 5596 aa6.07□□□□□ -1.44
HDAC3-213ENST00000492506 KMT2DO14686 5537 aa6.04□□□□□ -1.44
HDAC3-213ENST00000492506 KRTAP5-9P26371 169 aa6.02□□□□□ -1.45
HDAC3-213ENST00000492506 KRTAP12-1P59990 96 aa6.01□□□□□ -1.45
HDAC3-213ENST00000492506 PLAC4Q8WY50 150 aa6.01□□□□□ -1.45
HDAC3-213ENST00000492506 KRTAP12-2P59991 146 aa6□□□□□ -1.45
HDAC3-213ENST00000492506 KRTAP3-3Q9BYR6 98 aa6□□□□□ -1.45
HDAC3-213ENST00000492506 MT1BP07438 61 aa5.98□□□□□ -1.45
HDAC3-213ENST00000492506 PP632Q6XCG6 107 aa5.94□□□□□ -1.46
HDAC3-213ENST00000492506 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
HDAC3-213ENST00000492506 KRTAP10-5P60370 271 aa5.92□□□□□ -1.46
HDAC3-213ENST00000492506 KRTAP2-3P0C7H8 128 aa5.91□□□□□ -1.46
HDAC3-213ENST00000492506 KRTAP2-4Q9BYR9 128 aa5.91□□□□□ -1.46
HDAC3-213ENST00000492506 KRTAP19-8Q3LI54 63 aa5.89□□□□□ -1.47
HDAC3-213ENST00000492506 SPRR2GQ9BYE4 73 aa5.85□□□□□ -1.47
HDAC3-213ENST00000492506 SPRR2EP22531 72 aa5.71□□□□□ -1.5
HDAC3-213ENST00000492506 SPRR2BP35325 72 aa5.71□□□□□ -1.5
HDAC3-213ENST00000492506 SPRR2AP35326 72 aa5.71□□□□□ -1.5
HDAC3-213ENST00000492506 SPRR2FQ96RM1 72 aa5.7□□□□□ -1.5
HDAC3-213ENST00000492506 KRTAP2-2Q9BYT5 123 aa5.69□□□□□ -1.5
HDAC3-213ENST00000492506 KRTAP2-1Q9BYU5 128 aa5.69□□□□□ -1.5
HDAC3-213ENST00000492506 KRTAP23-1A1A580 65 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms