RNA–Protein interactions for RNA: ENST00000489868.5

CCDC39-206, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 534 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-206ENST00000489868 CELSR3Q9NYQ7 3312 aa0.05□□□□□ -2.4
CCDC39-206ENST00000489868 SRRM2Q9UQ35 2752 aaKnown RBP0.05□□□□□ -2.4
CCDC39-206ENST00000489868 PDZD2O15018 2839 aa0.05□□□□□ -2.4
CCDC39-206ENST00000489868 COL6A3P12111 3177 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 TACC2O95359 2948 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 FAM186AA6NE01 2351 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 ANKRD11Q6UB99 2663 aaPredicted RBP0.04□□□□□ -2.4
CCDC39-206ENST00000489868 KMT2AQ03164 3969 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 PKD1L1Q8TDX9 2849 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 FASNP49327 2511 aaKnown RBP0.04□□□□□ -2.4
CCDC39-206ENST00000489868 MGAM2Q2M2H8 2515 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 KRTAP19-7Q3SYF9 63 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 TEP1Q99973 2627 aaKnown RBP0.04□□□□□ -2.4
CCDC39-206ENST00000489868 SPENQ96T58 3664 aaKnown RBP0.04□□□□□ -2.4
CCDC39-206ENST00000489868 SZT2Q5T011 3432 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 TENM2Q9NT68 2774 aa0.04□□□□□ -2.4
CCDC39-206ENST00000489868 RIF1Q5UIP0 2472 aaKnown RBP0.04□□□□□ -2.4
CCDC39-206ENST00000489868 EPG5Q9HCE0 2579 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 CHD7Q9P2D1 2997 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 LYSTQ99698 3801 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 BSNQ9UPA5 3926 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 HSPG2P98160 4391 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 ZANQ9Y493 2812 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 SPTBN5Q9NRC6 3674 aaKnown RBP0.03□□□□□ -2.4
CCDC39-206ENST00000489868 MYCBP2O75592 4640 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 KRTAP6-1Q3LI64 71 aa0.03□□□□□ -2.4
CCDC39-206ENST00000489868 WDR87Q6ZQQ6 2873 aa0.03□□□□□ -2.41
CCDC39-206ENST00000489868 USP9YO00507 2555 aaPredicted RBP0.02□□□□□ -2.41
CCDC39-206ENST00000489868 MGAQ8IWI9 3026 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 HTTP42858 3142 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 LRRK2Q5S007 2527 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 NBPF19A0A087WUL8 3843 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 MT2AP02795 61 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 MT1MQ8N339 61 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 FLNAP21333 2647 aaKnown RBP0.02□□□□□ -2.41
CCDC39-206ENST00000489868 ITPR3Q14573 2671 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 VPS13BQ7Z7G8 4022 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 HIVEP1P15822 2718 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 TGP01266 2768 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 NIPBLQ6KC79 2804 aaeCLIP0.02□□□□□ -2.41
CCDC39-206ENST00000489868 FRYQ5TBA9 3013 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 SPG11Q96JI7 2443 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 CEP250Q9BV73 2442 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 LAMA3Q16787 3333 aa0.02□□□□□ -2.41
CCDC39-206ENST00000489868 MYO18BQ8IUG5 2567 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 DCHS2Q6V1P9 2916 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 HECTD4Q9Y4D8 3996 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 DMXL2Q8TDJ6 3036 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 MKI67P46013 3256 aaKnown RBP0.01□□□□□ -2.41
CCDC39-206ENST00000489868 MYO15AQ9UKN7 3530 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 MT1HL1P0DM35 61 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 USP9XQ93008 2570 aaPredicted RBP0.01□□□□□ -2.41
CCDC39-206ENST00000489868 IGSF10Q6WRI0 2623 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 NBEAL2Q6ZNJ1 2754 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 TEX15Q9BXT5 2789 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 KALRNO60229 2985 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 CFAP54Q96N23 3096 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 TLN2Q9Y4G6 2542 aa0.01□□□□□ -2.41
CCDC39-206ENST00000489868 MAP1AP78559 2803 aaPredicted RBP0□□□□□ -2.41
CCDC39-206ENST00000489868 MXRA5Q9NR99 2828 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 NBEAQ8NFP9 2946 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 ZZEF1O43149 2961 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 FRYLO94915 3013 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 LAMA2P24043 3122 aaKnown RBP0□□□□□ -2.41
CCDC39-206ENST00000489868 CSMD2Q7Z408 3487 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 SYNE1Q8NF91 8797 aaKnown RBP0□□□□□ -2.41
CCDC39-206ENST00000489868 MT1BP07438 61 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 MT4P47944 62 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 LRP1Q07954 4544 aaKnown RBP0□□□□□ -2.41
CCDC39-206ENST00000489868 KRTAP20-2Q3LI61 65 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 DOPEY1Q5JWR5 2465 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 NBEAL1Q6ZS30 2694 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 WDFY4Q6ZS81 3184 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 FAT2Q9NYQ8 4349 aa0□□□□□ -2.41
CCDC39-206ENST00000489868 MACF1Q9UPN3 7388 aaKnown RBP0□□□□□ -2.41
CCDC39-206ENST00000489868 SSPOA2VEC9 5147 aa-0□□□□□ -2.41
CCDC39-206ENST00000489868 XIRP2A4UGR9 3374 aa-0□□□□□ -2.41
CCDC39-206ENST00000489868 LPAP08519 4548 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 AKAP9Q99996 3911 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 MUC3AQ02505 3323 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 DCHS1Q96JQ0 3298 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 ADGRG4Q8IZF6 3080 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 ANK3Q12955 4377 aaKnown RBP-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 ITPR1Q14643 2758 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 PRKDCP78527 4128 aaKnown RBP-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 STAB2Q8WWQ8 2551 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 SRCAPQ6ZRS2 3230 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 ATMQ13315 3056 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 VPS13CQ709C8 3753 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 DMDP11532 3685 aa-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 SMG1Q96Q15 3661 aaKnown RBP-0.01□□□□□ -2.41
CCDC39-206ENST00000489868 FLGP20930 4061 aaPredicted RBP-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 LOC400499M0QZD8 3231 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 FREM2Q5SZK8 3169 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 BOD1L1Q8NFC6 3051 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 LRP1BQ9NZR2 4599 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 DNAH11Q96DT5 4516 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 MT1FP04733 61 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 KRTAP19-2Q3LHN2 52 aa-0.02□□□□□ -2.41
CCDC39-206ENST00000489868 C5orf42Q9H799 3197 aa-0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms