RNA–Protein interactions for RNA: ENST00000489868.5

CCDC39-206, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 534 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-206ENST00000489868 AEBP2Q6ZN18 517 aaPredicted RBP29.46■■■□□ 2.31
CCDC39-206ENST00000489868 CHIC1Q5VXU3 224 aa28.67■■■□□ 2.18
CCDC39-206ENST00000489868 PHF23Q9BUL5 403 aaPredicted RBP25.31■■□□□ 1.64
CCDC39-206ENST00000489868 SENP3Q9H4L4 574 aaPredicted RBP24.83■■□□□ 1.57
CCDC39-206ENST00000489868 PLPPR3Q6T4P5 718 aa23.22■■□□□ 1.31
CCDC39-206ENST00000489868 FOXD1Q16676 465 aa23.15■■□□□ 1.3
CCDC39-206ENST00000489868 PPP6R1Q9UPN7 881 aa22.34■■□□□ 1.17
CCDC39-206ENST00000489868 ADRA2BP18089 450 aa22.28■■□□□ 1.16
CCDC39-206ENST00000489868 PIAS4Q8N2W9 510 aaPredicted RBP21.77■■□□□ 1.08
CCDC39-206ENST00000489868 MSH5O43196 834 aa21.22■□□□□ 0.99
CCDC39-206ENST00000489868 PPP4R3CPQ6ZMV5 832 aa20.51■□□□□ 0.87
CCDC39-206ENST00000489868 MAPK8IP2Q13387 824 aaPredicted RBP20.24■□□□□ 0.83
CCDC39-206ENST00000489868 SCAF1Q9H7N4 1312 aaKnown RBP20.19■□□□□ 0.82
CCDC39-206ENST00000489868 KCNA4P22459 653 aa20.1■□□□□ 0.81
CCDC39-206ENST00000489868 CNKSR2Q8WXI2 1034 aa19.89■□□□□ 0.77
CCDC39-206ENST00000489868 DMRT2Q9Y5R5 561 aa19.87■□□□□ 0.77
CCDC39-206ENST00000489868 NCBP3Q53F19 620 aaKnown RBP19.86■□□□□ 0.77
CCDC39-206ENST00000489868 NPM3O75607 178 aaKnown RBP19.71■□□□□ 0.75
CCDC39-206ENST00000489868 RNF216Q9NWF9 866 aaPredicted RBP19.51■□□□□ 0.71
CCDC39-206ENST00000489868 HOXD11P31277 338 aaPredicted RBP19.46■□□□□ 0.71
CCDC39-206ENST00000489868 POTEDQ86YR6 584 aa19.43■□□□□ 0.7
CCDC39-206ENST00000489868 DNAJC5BQ9UF47 199 aa19.09■□□□□ 0.65
CCDC39-206ENST00000489868 SLC4A1APQ9BWU0 796 aaKnown RBP19.06■□□□□ 0.64
CCDC39-206ENST00000489868 DCAF8L1A6NGE4 600 aa18.96■□□□□ 0.63
CCDC39-206ENST00000489868 SLC4A2P04920 1241 aa18.66■□□□□ 0.58
CCDC39-206ENST00000489868 EHMT2Q96KQ7 1210 aa18.58■□□□□ 0.56
CCDC39-206ENST00000489868 ZBTB22O15209 634 aa18.57■□□□□ 0.56
CCDC39-206ENST00000489868 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC39-206ENST00000489868 FOXD4L1Q9NU39 408 aa18.41■□□□□ 0.54
CCDC39-206ENST00000489868 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.53
CCDC39-206ENST00000489868 U3KPZ7 1027 aaPredicted RBP18.29■□□□□ 0.52
CCDC39-206ENST00000489868 RNF39Q9H2S5 420 aa18.27■□□□□ 0.52
CCDC39-206ENST00000489868 MYCNP04198 464 aaPredicted RBP18.14■□□□□ 0.49
CCDC39-206ENST00000489868 C1QBPQ07021 282 aaKnown RBP17.98■□□□□ 0.47
CCDC39-206ENST00000489868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.88■□□□□ 0.45
CCDC39-206ENST00000489868 HNRNPUL2Q1KMD3 747 aaKnown RBP17.88■□□□□ 0.45
CCDC39-206ENST00000489868 SAMD1Q6SPF0 538 aaPredicted RBP17.87■□□□□ 0.45
CCDC39-206ENST00000489868 SPINK5Q9NQ38 1064 aaPredicted RBP17.8■□□□□ 0.44
CCDC39-206ENST00000489868 ATF5Q9Y2D1 282 aaPredicted RBP17.8■□□□□ 0.44
CCDC39-206ENST00000489868 CACNB1Q02641 598 aaPredicted RBP17.73■□□□□ 0.43
CCDC39-206ENST00000489868 ATXN8OSP0DMR3 200 aa17.72■□□□□ 0.43
CCDC39-206ENST00000489868 APLP2Q06481 763 aa17.65■□□□□ 0.42
CCDC39-206ENST00000489868 CAPN15O75808 1086 aa17.63■□□□□ 0.41
CCDC39-206ENST00000489868 TRHP20396 242 aaPredicted RBP17.56■□□□□ 0.4
CCDC39-206ENST00000489868 ZNF219Q9P2Y4 722 aaPredicted RBP17.5■□□□□ 0.39
CCDC39-206ENST00000489868 DSG3P32926 999 aa17.39■□□□□ 0.37
CCDC39-206ENST00000489868 ABCB7O75027 752 aa17.36■□□□□ 0.37
CCDC39-206ENST00000489868 POLA2Q14181 598 aa17.3■□□□□ 0.36
CCDC39-206ENST00000489868 MKRN4PQ13434 485 aaPredicted RBP17.01■□□□□ 0.31
CCDC39-206ENST00000489868 ZBTB12Q9Y330 459 aaPredicted RBP16.9■□□□□ 0.3
CCDC39-206ENST00000489868 FBLN2P98095 1184 aa16.85■□□□□ 0.29
CCDC39-206ENST00000489868 OSCARQ8IYS5 282 aa16.74■□□□□ 0.27
CCDC39-206ENST00000489868 FKBP8Q14318 412 aa16.57■□□□□ 0.24
CCDC39-206ENST00000489868 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
CCDC39-206ENST00000489868 SPDYE2BA6NHP3 402 aa16.5■□□□□ 0.23
CCDC39-206ENST00000489868 SPDYE6P0CI01 402 aa16.5■□□□□ 0.23
CCDC39-206ENST00000489868 SPDYE2Q495Y8 402 aa16.5■□□□□ 0.23
CCDC39-206ENST00000489868 ZNF692Q9BU19 519 aaPredicted RBP16.45■□□□□ 0.22
CCDC39-206ENST00000489868 RBM42Q9BTD8 480 aaKnown RBP16.44■□□□□ 0.22
CCDC39-206ENST00000489868 SSUH2Q9Y2M2 353 aa16.44■□□□□ 0.22
CCDC39-206ENST00000489868 PROM2Q8N271 834 aa16.32■□□□□ 0.2
CCDC39-206ENST00000489868 AKT1S1Q96B36 256 aa16.29■□□□□ 0.2
CCDC39-206ENST00000489868 PABPN1Q86U42 306 aaKnown RBP eCLIP16.27■□□□□ 0.2
CCDC39-206ENST00000489868 REM2Q8IYK8 340 aaPredicted RBP16.19■□□□□ 0.18
CCDC39-206ENST00000489868 PITPNM1O00562 1244 aa16.03■□□□□ 0.16
CCDC39-206ENST00000489868 SPDYE1Q8NFV5 336 aaPredicted RBP15.99■□□□□ 0.15
CCDC39-206ENST00000489868 CLEC11AQ9Y240 323 aa15.96■□□□□ 0.15
CCDC39-206ENST00000489868 STAG3Q9UJ98 1225 aa15.89■□□□□ 0.13
CCDC39-206ENST00000489868 FBXO3Q9UK99 471 aa15.87■□□□□ 0.13
CCDC39-206ENST00000489868 CHRDL2Q6WN34 429 aa15.85■□□□□ 0.13
CCDC39-206ENST00000489868 PRR29P0C7W0 189 aa15.8■□□□□ 0.12
CCDC39-206ENST00000489868 VASPP50552 380 aaPredicted RBP15.76■□□□□ 0.11
CCDC39-206ENST00000489868 FXR2P51116 673 aaKnown RBP eCLIP15.71■□□□□ 0.11
CCDC39-206ENST00000489868 PIP4P2Q8N4L2 257 aa15.69■□□□□ 0.1
CCDC39-206ENST00000489868 CREBZFQ9NS37 354 aa15.69■□□□□ 0.1
CCDC39-206ENST00000489868 CHADLQ6NUI6 762 aa15.64■□□□□ 0.09
CCDC39-206ENST00000489868 MIER1Q8N108 512 aa15.64■□□□□ 0.09
CCDC39-206ENST00000489868 IFNLR1Q8IU57 520 aaPredicted RBP15.6■□□□□ 0.09
CCDC39-206ENST00000489868 PLCD3Q8N3E9 789 aa15.6■□□□□ 0.09
CCDC39-206ENST00000489868 PRKAR2AP13861 404 aaKnown RBP15.59■□□□□ 0.09
CCDC39-206ENST00000489868 MNX1P50219 401 aaPredicted RBP15.56■□□□□ 0.08
CCDC39-206ENST00000489868 FARP1Q9Y4F1 1045 aaPredicted RBP15.45■□□□□ 0.06
CCDC39-206ENST00000489868 PLEKHG5O94827 1062 aa15.44■□□□□ 0.06
CCDC39-206ENST00000489868 KLHL34Q8N239 644 aa15.42■□□□□ 0.06
CCDC39-206ENST00000489868 ZBTB47Q9UFB7 747 aaPredicted RBP15.36■□□□□ 0.05
CCDC39-206ENST00000489868 POTEHQ6S545 545 aa15.35■□□□□ 0.05
CCDC39-206ENST00000489868 NUBP1P53384 320 aa15.32■□□□□ 0.04
CCDC39-206ENST00000489868 SPOCK2Q92563 424 aa15.31■□□□□ 0.04
CCDC39-206ENST00000489868 NPM1P06748 294 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCDC39-206ENST00000489868 RASEFQ8IZ41 740 aa15.27■□□□□ 0.04
CCDC39-206ENST00000489868 C19orf67A6NJJ6 358 aa15.17■□□□□ 0.02
CCDC39-206ENST00000489868 EVX2Q03828 476 aa15.14■□□□□ 0.01
CCDC39-206ENST00000489868 CD44P16070 742 aaKnown RBP15.13■□□□□ 0.01
CCDC39-206ENST00000489868 TSPYL2Q9H2G4 693 aaPredicted RBP15.13■□□□□ 0.01
CCDC39-206ENST00000489868 RTN4Q9NQC3 1192 aaKnown RBP15.12■□□□□ 0.01
CCDC39-206ENST00000489868 HAX1O00165 279 aa15.11■□□□□ 0.01
CCDC39-206ENST00000489868 FAM212AQ96EL1 285 aa15.1■□□□□ 0.01
CCDC39-206ENST00000489868 DCAF8Q5TAQ9 597 aa15.09■□□□□ 0.01
CCDC39-206ENST00000489868 PKD2Q13563 968 aa15.08■□□□□ 0
CCDC39-206ENST00000489868 CIZ1Q9ULV3 898 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms