RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 LPAP08519 4548 aa0.34□□□□□ -2.36
SMC4-220ENST00000488017 ZANQ9Y493 2812 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 UTP20O75691 2785 aaKnown RBP0.33□□□□□ -2.36
SMC4-220ENST00000488017 MUC17Q685J3 4493 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 DEFB131AP59861 70 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 UBE2DNLQ8IWF7 75 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 DEFB105AQ8NG35 78 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 APCP25054 2843 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 APC2O95996 2303 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 PIEZO1Q92508 2521 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 SETD2Q9BYW2 2564 aaPredicted RBP0.33□□□□□ -2.36
SMC4-220ENST00000488017 NBEAL2Q6ZNJ1 2754 aa0.33□□□□□ -2.36
SMC4-220ENST00000488017 TEP1Q99973 2627 aaKnown RBP0.33□□□□□ -2.36
SMC4-220ENST00000488017 PKD1L1Q8TDX9 2849 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 CEP290O15078 2479 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 LRP2P98164 4655 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 CACNA1HO95180 2353 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 ABCA12Q86UK0 2595 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 GVINP1Q7Z2Y8 2422 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 CREBBPQ92793 2442 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 SPINK13Q1W4C9 94 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 DEFB110Q30KQ9 67 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 Q5VSD8 79 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 APLNQ9ULZ1 77 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 MXRA5Q9NR99 2828 aa0.32□□□□□ -2.36
SMC4-220ENST00000488017 PTPN13Q12923 2485 aa0.31□□□□□ -2.36
SMC4-220ENST00000488017 TEX15Q9BXT5 2789 aa0.31□□□□□ -2.36
SMC4-220ENST00000488017 SPINK1P00995 79 aa0.31□□□□□ -2.36
SMC4-220ENST00000488017 PRLHP81277 87 aa0.31□□□□□ -2.36
SMC4-220ENST00000488017 USP9YO00507 2555 aaPredicted RBP0.31□□□□□ -2.36
SMC4-220ENST00000488017 HRNRQ86YZ3 2850 aaPredicted RBP0.31□□□□□ -2.36
SMC4-220ENST00000488017 SETXQ7Z333 2677 aaKnown RBP0.3□□□□□ -2.36
SMC4-220ENST00000488017 A0A0D9SG42 100 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 DEFB136Q30KP8 78 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 KRTAP19-3Q7Z4W3 81 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 USMG5Q96IX5 58 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 HIVEP3Q5T1R4 2406 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 CEP250Q9BV73 2442 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 DNHD1Q96M86 4753 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 TENM4Q6N022 2769 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 ATRQ13535 2644 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 HECTD1Q9ULT8 2610 aa0.3□□□□□ -2.36
SMC4-220ENST00000488017 HIVEP1P15822 2718 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 DMBT1Q9UGM3 2413 aaPredicted RBP0.29□□□□□ -2.36
SMC4-220ENST00000488017 MAP1BP46821 2468 aaKnown RBP0.29□□□□□ -2.36
SMC4-220ENST00000488017 NIPBLQ6KC79 2804 aaeCLIP0.29□□□□□ -2.366e-6■□□□□ 9
SMC4-220ENST00000488017 STAB1Q9NY15 2570 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 ANKRD11Q6UB99 2663 aaPredicted RBP0.29□□□□□ -2.36
SMC4-220ENST00000488017 FLNCQ14315 2725 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 KRTAP2-3P0C7H8 128 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 RHPN1-AS1Q9BWJ2 59 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 KRTAP2-4Q9BYR9 128 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 KRTAP2-1Q9BYU5 128 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 PRO0255Q9UI72 69 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 NBASA2RRP1 2371 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 SPG11Q96JI7 2443 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 RIF1Q5UIP0 2472 aaKnown RBP0.29□□□□□ -2.36
SMC4-220ENST00000488017 POLQO75417 2590 aa0.29□□□□□ -2.36
SMC4-220ENST00000488017 PKD1L2Q7Z442 2459 aa0.28□□□□□ -2.36
SMC4-220ENST00000488017 H3BUA1 57 aa0.28□□□□□ -2.36
SMC4-220ENST00000488017 DEFB108BQ8NET1 73 aa0.28□□□□□ -2.36
SMC4-220ENST00000488017 MUC2Q02817 5179 aa0.28□□□□□ -2.36
SMC4-220ENST00000488017 BIRC6Q9NR09 4857 aa0.28□□□□□ -2.37
SMC4-220ENST00000488017 NBEAL1Q6ZS30 2694 aa0.28□□□□□ -2.37
SMC4-220ENST00000488017 GCN1Q92616 2671 aaKnown RBP0.28□□□□□ -2.37
SMC4-220ENST00000488017 USP24Q9UPU5 2620 aa0.27□□□□□ -2.37
SMC4-220ENST00000488017 HTN1P15515 57 aa0.27□□□□□ -2.37
SMC4-220ENST00000488017 SMR3AQ99954 134 aa0.27□□□□□ -2.37
SMC4-220ENST00000488017 NOP10Q9NPE3 64 aaKnown RBP0.27□□□□□ -2.37
SMC4-220ENST00000488017 RYR3Q15413 4870 aa0.27□□□□□ -2.37
SMC4-220ENST00000488017 USP9XQ93008 2570 aaPredicted RBP0.27□□□□□ -2.37
SMC4-220ENST00000488017 ITPR2Q14571 2701 aa0.27□□□□□ -2.37
SMC4-220ENST00000488017 KMT2CQ8NEZ4 4911 aaKnown RBP0.27□□□□□ -2.37
SMC4-220ENST00000488017 TGP01266 2768 aa0.27□□□□□ -2.37
SMC4-220ENST00000488017 HYDINQ4G0P3 5121 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 CACNA1AO00555 2505 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 HMCN2Q8NDA2 5059 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 PCLOQ9Y6V0 5065 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 A0A096LNI7 61 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 CD52P31358 61 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 RNF213Q63HN8 5207 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 SONP18583 2426 aaKnown RBP0.26□□□□□ -2.37
SMC4-220ENST00000488017 EPG5Q9HCE0 2579 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 CHD8Q9HCK8 2581 aa0.26□□□□□ -2.37
SMC4-220ENST00000488017 SYNE1Q8NF91 8797 aaKnown RBP0.25□□□□□ -2.37
SMC4-220ENST00000488017 BDP1A6H8Y1 2624 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 LRRK2Q5S007 2527 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 DOPEY1Q5JWR5 2465 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 UBR4Q5T4S7 5183 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 A0A096LPF7 62 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 H3BUX3 64 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 M0QZ58 72 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 SPINK6Q6UWN8 80 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 DEFB124Q8NES8 71 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 HERC2O95714 4834 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 CFAP46Q8IYW2 2715 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 NSD1Q96L73 2696 aaPredicted RBP0.25□□□□□ -2.37
SMC4-220ENST00000488017 ZFYVE26Q68DK2 2539 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 FAM186AA6NE01 2351 aa0.25□□□□□ -2.37
SMC4-220ENST00000488017 CENPEQ02224 2701 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms