RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 DMBT1Q9UGM3 2413 aaPredicted RBP9.31□□□□□ -0.92
VIM-206ENST00000487938 MYCBP2O75592 4640 aa9.29□□□□□ -0.92
VIM-206ENST00000487938 CSAG1Q6PB30 78 aa9.29□□□□□ -0.92
VIM-206ENST00000487938 RPL37P61927 97 aaKnown RBP9.28□□□□□ -0.92
VIM-206ENST00000487938 KRTAP17-1Q9BYP8 105 aa9.26□□□□□ -0.93
VIM-206ENST00000487938 XP32Q5T750 250 aa9.26□□□□□ -0.93
VIM-206ENST00000487938 RYR1P21817 5038 aa9.26□□□□□ -0.93
VIM-206ENST00000487938 KRTAP3-3Q9BYR6 98 aa9.22□□□□□ -0.93
VIM-206ENST00000487938 LINC01554Q52M75 96 aa9.19□□□□□ -0.94
VIM-206ENST00000487938 KRTAP10-6P60371 365 aaPredicted RBP9.14□□□□□ -0.95
VIM-206ENST00000487938 MT1HL1P0DM35 61 aa9.12□□□□□ -0.95
VIM-206ENST00000487938 KIAA1109Q2LD37 5005 aa9.12□□□□□ -0.95
VIM-206ENST00000487938 S4R3F8 94 aa9.12□□□□□ -0.95
VIM-206ENST00000487938 KRTAP3-2Q9BYR7 98 aa9.07□□□□□ -0.96
VIM-206ENST00000487938 K7ERS5 55 aa9.07□□□□□ -0.96
VIM-206ENST00000487938 KRTAP13-4Q3LI77 160 aa9.07□□□□□ -0.96
VIM-206ENST00000487938 LPAP08519 4548 aa9.06□□□□□ -0.96
VIM-206ENST00000487938 A0A0D9SG42 100 aa9.03□□□□□ -0.96
VIM-206ENST00000487938 CRIPTQ9P021 101 aa9.01□□□□□ -0.97
VIM-206ENST00000487938 KRTAP25-1Q3LHN0 102 aa9□□□□□ -0.97
VIM-206ENST00000487938 P0C880 135 aa9□□□□□ -0.97
VIM-206ENST00000487938 EPPK1P58107 5090 aaKnown RBP8.98□□□□□ -0.97
VIM-206ENST00000487938 LRP2P98164 4655 aa8.96□□□□□ -0.97
VIM-206ENST00000487938 ROMO1P60602 79 aa8.89□□□□□ -0.99
VIM-206ENST00000487938 TPRXLQ17RH7 258 aa8.87□□□□□ -0.99
VIM-206ENST00000487938 KRTAP4-5Q9BYR2 181 aa8.85□□□□□ -0.99
VIM-206ENST00000487938 ABCA13Q86UQ4 5058 aa8.79□□□□□ -1
VIM-206ENST00000487938 KRTAP12-2P59991 146 aa8.78□□□□□ -1
VIM-206ENST00000487938 SPINT4Q6UDR6 99 aa8.72□□□□□ -1.01
VIM-206ENST00000487938 KRTAP12-1P59990 96 aa8.69□□□□□ -1.02
VIM-206ENST00000487938 C10orf95Q9H7T3 257 aa8.65□□□□□ -1.02
VIM-206ENST00000487938 M0QZ58 72 aa8.63□□□□□ -1.03
VIM-206ENST00000487938 J3QL48 77 aa8.62□□□□□ -1.03
VIM-206ENST00000487938 MUC17Q685J3 4493 aa8.58□□□□□ -1.04
VIM-206ENST00000487938 SEC61BP60468 96 aaKnown RBP8.55□□□□□ -1.04
VIM-206ENST00000487938 KRTAP4-1Q9BYQ7 146 aa8.52□□□□□ -1.04
VIM-206ENST00000487938 HERC2O95714 4834 aa8.5□□□□□ -1.05
VIM-206ENST00000487938 R4GN34 69 aa8.47□□□□□ -1.05
VIM-206ENST00000487938 LORP23490 312 aaPredicted RBP8.45□□□□□ -1.06
VIM-206ENST00000487938 BIRC6Q9NR09 4857 aa8.42□□□□□ -1.06
VIM-206ENST00000487938 LCE2DQ5TA82 110 aaPredicted RBP8.4□□□□□ -1.07
VIM-206ENST00000487938 H3BS24 57 aa8.36□□□□□ -1.07
VIM-206ENST00000487938 KRTAP19-2Q3LHN2 52 aa8.32□□□□□ -1.08
VIM-206ENST00000487938 MUC2Q02817 5179 aa8.25□□□□□ -1.09
VIM-206ENST00000487938 KRTAP15-1Q3LI76 137 aa8.21□□□□□ -1.1
VIM-206ENST00000487938 PCLOQ9Y6V0 5065 aa8.17□□□□□ -1.1
VIM-206ENST00000487938 FLGP20930 4061 aaPredicted RBP8.11□□□□□ -1.11
VIM-206ENST00000487938 HERC1Q15751 4861 aa8.07□□□□□ -1.12
VIM-206ENST00000487938 CAMK2N1Q7Z7J9 78 aa8.05□□□□□ -1.12
VIM-206ENST00000487938 HMCN2Q8NDA2 5059 aa8.03□□□□□ -1.12
VIM-206ENST00000487938 NDUFAF8A1L188 74 aa8.03□□□□□ -1.12
VIM-206ENST00000487938 PLAC4Q8WY50 150 aa7.89□□□□□ -1.15
VIM-206ENST00000487938 LCE2CQ5TA81 110 aa7.83□□□□□ -1.16
VIM-206ENST00000487938 FAT4Q6V0I7 4981 aa7.82□□□□□ -1.16
VIM-206ENST00000487938 PP632Q6XCG6 107 aa7.81□□□□□ -1.16
VIM-206ENST00000487938 TNP1P09430 55 aa7.72□□□□□ -1.17
VIM-206ENST00000487938 M0R2T5 61 aa7.7□□□□□ -1.18
VIM-206ENST00000487938 RNF213Q63HN8 5207 aa7.65□□□□□ -1.18
VIM-206ENST00000487938 MT1HP80294 61 aa7.64□□□□□ -1.19
VIM-206ENST00000487938 KRTAP19-1Q8IUB9 90 aa7.64□□□□□ -1.19
VIM-206ENST00000487938 SPRR2GQ9BYE4 73 aa7.64□□□□□ -1.19
VIM-206ENST00000487938 UBR4Q5T4S7 5183 aa7.64□□□□□ -1.19
VIM-206ENST00000487938 KRTAP23-1A1A580 65 aa7.53□□□□□ -1.2
VIM-206ENST00000487938 KRTAP10-10P60014 251 aa7.53□□□□□ -1.2
VIM-206ENST00000487938 MT1FP04733 61 aa7.51□□□□□ -1.21
VIM-206ENST00000487938 MT2AP02795 61 aa7.5□□□□□ -1.21
VIM-206ENST00000487938 LUZP6Q538Z0 58 aa7.48□□□□□ -1.21
VIM-206ENST00000487938 KRTAP9-8Q9BYQ0 159 aa7.45□□□□□ -1.22
VIM-206ENST00000487938 LCE3AQ5TA76 89 aa7.36□□□□□ -1.23
VIM-206ENST00000487938 KRTAP19-8Q3LI54 63 aa7.29□□□□□ -1.24
VIM-206ENST00000487938 SPRR5A0A1B0GTR4 108 aa7.29□□□□□ -1.24
VIM-206ENST00000487938 MT1BP07438 61 aa7.25□□□□□ -1.25
VIM-206ENST00000487938 KRTAP10-5P60370 271 aa7.21□□□□□ -1.25
VIM-206ENST00000487938 MT1XP80297 61 aa7.2□□□□□ -1.26
VIM-206ENST00000487938 KRTAP9-3Q9BYQ3 159 aa7.13□□□□□ -1.27
VIM-206ENST00000487938 KRTAP8-1Q8IUC2 63 aa7.11□□□□□ -1.27
VIM-206ENST00000487938 A0A0A0MQY5 61 aa7.06□□□□□ -1.28
VIM-206ENST00000487938 KRTAP10-12P60413 245 aa7.04□□□□□ -1.28
VIM-206ENST00000487938 KRTAP10-7P60409 375 aaPredicted RBP7.03□□□□□ -1.28
VIM-206ENST00000487938 KRTAP12-3P60328 96 aa6.98□□□□□ -1.29
VIM-206ENST00000487938 LCE2AQ5TA79 106 aaPredicted RBP6.94□□□□□ -1.3
VIM-206ENST00000487938 LCE2BO14633 110 aa6.92□□□□□ -1.3
VIM-206ENST00000487938 PRO2289Q9P1D8 64 aa6.88□□□□□ -1.31
VIM-206ENST00000487938 USH2AO75445 5202 aa6.78□□□□□ -1.32
VIM-206ENST00000487938 KRTAP19-5Q3LI72 72 aa6.73□□□□□ -1.33
VIM-206ENST00000487938 KMT2DO14686 5537 aa6.71□□□□□ -1.33
VIM-206ENST00000487938 KRTAP4-8A0A0G2JLE6 195 aa6.64□□□□□ -1.35
VIM-206ENST00000487938 KRTAP4-8Q9BYQ9 185 aa6.64□□□□□ -1.35
VIM-206ENST00000487938 LCE3CQ5T5A8 94 aa6.57□□□□□ -1.36
VIM-206ENST00000487938 KRTAP19-7Q3SYF9 63 aa6.41□□□□□ -1.38
VIM-206ENST00000487938 KRTAP9-6A8MVA2 160 aa6.37□□□□□ -1.39
VIM-206ENST00000487938 INE1O15225 51 aa6.37□□□□□ -1.39
VIM-206ENST00000487938 KRTAP4-7Q9BYR0 210 aa6.36□□□□□ -1.39
VIM-206ENST00000487938 SSPOA2VEC9 5147 aa6.32□□□□□ -1.4
VIM-206ENST00000487938 KRTAP19-6Q3LI70 58 aa6.28□□□□□ -1.4
VIM-206ENST00000487938 FSIP2Q5CZC0 6907 aa6.27□□□□□ -1.41
VIM-206ENST00000487938 MT1EP04732 61 aa6.22□□□□□ -1.41
VIM-206ENST00000487938 MT1LQ93083 61 aa6.22□□□□□ -1.41
VIM-206ENST00000487938 KRTAP19-4Q3LI73 84 aa6.08□□□□□ -1.44
VIM-206ENST00000487938 KRTAP2-3P0C7H8 128 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms