RNA–Protein interactions for RNA: ENST00000487558.1

CUL3-211, Transcript of cullin 3, humanhuman

TSL 2

Gene CUL3, Length 1,093 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-211ENST00000487558 POLR2KP53803 58 aaKnown RBP0.41□□□□□ -2.34
CUL3-211ENST00000487558 TGP01266 2768 aa0.41□□□□□ -2.34
CUL3-211ENST00000487558 TENM2Q9NT68 2774 aa0.41□□□□□ -2.34
CUL3-211ENST00000487558 CCDC168Q8NDH2 2452 aa0.41□□□□□ -2.34
CUL3-211ENST00000487558 ACACBO00763 2458 aa0.4□□□□□ -2.35
CUL3-211ENST00000487558 RELNP78509 3460 aa0.4□□□□□ -2.35
CUL3-211ENST00000487558 COL12A1Q99715 3063 aa0.39□□□□□ -2.35
CUL3-211ENST00000487558 FASNP49327 2511 aaKnown RBP0.39□□□□□ -2.35
CUL3-211ENST00000487558 MAP1AP78559 2803 aaPredicted RBP0.39□□□□□ -2.35
CUL3-211ENST00000487558 ZANQ9Y493 2812 aa0.39□□□□□ -2.35
CUL3-211ENST00000487558 HECTD4Q9Y4D8 3996 aa0.39□□□□□ -2.35
CUL3-211ENST00000487558 KALRNO60229 2985 aa0.39□□□□□ -2.35
CUL3-211ENST00000487558 CFAP47Q6ZTR5 3102 aa0.38□□□□□ -2.35
CUL3-211ENST00000487558 MUC3AQ02505 3323 aa0.38□□□□□ -2.35
CUL3-211ENST00000487558 USH2AO75445 5202 aa0.38□□□□□ -2.35
CUL3-211ENST00000487558 MKI67P46013 3256 aaKnown RBP0.38□□□□□ -2.35
CUL3-211ENST00000487558 STAB2Q8WWQ8 2551 aa0.38□□□□□ -2.35
CUL3-211ENST00000487558 SPRR2AP35326 72 aa0.38□□□□□ -2.35
CUL3-211ENST00000487558 CLPSL2Q6UWE3 100 aa0.38□□□□□ -2.35
CUL3-211ENST00000487558 LAMA2P24043 3122 aaKnown RBP0.38□□□□□ -2.35
CUL3-211ENST00000487558 SPTBN5Q9NRC6 3674 aaKnown RBP0.37□□□□□ -2.35
CUL3-211ENST00000487558 HIVEP1P15822 2718 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 BOD1L1Q8NFC6 3051 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 FLGP20930 4061 aaPredicted RBP0.37□□□□□ -2.35
CUL3-211ENST00000487558 DNAH3Q8TD57 4116 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 EYSQ5T1H1 3165 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 TLN2Q9Y4G6 2542 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 MUC12Q9UKN1 5478 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 SACSQ9NZJ4 4579 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 HTTP42858 3142 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 FRYQ5TBA9 3013 aa0.37□□□□□ -2.35
CUL3-211ENST00000487558 LAMA3Q16787 3333 aa0.36□□□□□ -2.35
CUL3-211ENST00000487558 RPL39P62891 51 aaKnown RBP0.36□□□□□ -2.35
CUL3-211ENST00000487558 CENPFP49454 3210 aa0.35□□□□□ -2.35
CUL3-211ENST00000487558 SPEGQ15772 3267 aa0.35□□□□□ -2.35
CUL3-211ENST00000487558 UNC80Q8N2C7 3258 aa0.35□□□□□ -2.35
CUL3-211ENST00000487558 BRCA2P51587 3418 aa0.35□□□□□ -2.35
CUL3-211ENST00000487558 NBEAL1Q6ZS30 2694 aa0.34□□□□□ -2.35
CUL3-211ENST00000487558 FAT3Q8TDW7 4589 aa0.34□□□□□ -2.35
CUL3-211ENST00000487558 DOPEY1Q5JWR5 2465 aa0.34□□□□□ -2.36
CUL3-211ENST00000487558 CHD7Q9P2D1 2997 aa0.34□□□□□ -2.36
CUL3-211ENST00000487558 MXRA5Q9NR99 2828 aa0.34□□□□□ -2.36
CUL3-211ENST00000487558 AKAP9Q99996 3911 aa0.34□□□□□ -2.36
CUL3-211ENST00000487558 ASPMQ8IZT6 3477 aa0.34□□□□□ -2.36
CUL3-211ENST00000487558 CFAP46Q8IYW2 2715 aa0.34□□□□□ -2.36
CUL3-211ENST00000487558 PKHD1P08F94 4074 aa0.33□□□□□ -2.36
CUL3-211ENST00000487558 CUBNO60494 3623 aa0.33□□□□□ -2.36
CUL3-211ENST00000487558 LAMA5O15230 3695 aa0.33□□□□□ -2.36
CUL3-211ENST00000487558 HSPG2P98160 4391 aa0.33□□□□□ -2.36
CUL3-211ENST00000487558 EP400Q96L91 3159 aa0.33□□□□□ -2.36
CUL3-211ENST00000487558 USP9YO00507 2555 aaPredicted RBP0.33□□□□□ -2.36
CUL3-211ENST00000487558 PKHD1L1Q86WI1 4243 aa0.32□□□□□ -2.36
CUL3-211ENST00000487558 UTRNP46939 3433 aa0.32□□□□□ -2.36
CUL3-211ENST00000487558 KRTAP6-2Q3LI66 62 aa0.32□□□□□ -2.36
CUL3-211ENST00000487558 RANBP2P49792 3224 aaKnown RBP0.31□□□□□ -2.36
CUL3-211ENST00000487558 USP34Q70CQ2 3546 aa0.31□□□□□ -2.36
CUL3-211ENST00000487558 MT1AP04731 61 aa0.31□□□□□ -2.36
CUL3-211ENST00000487558 SPART-AS1P0CW21 52 aa0.31□□□□□ -2.36
CUL3-211ENST00000487558 TOMM7Q9P0U1 55 aa0.31□□□□□ -2.36
CUL3-211ENST00000487558 STARD9Q9P2P6 4700 aa0.31□□□□□ -2.36
CUL3-211ENST00000487558 C5orf42Q9H799 3197 aa0.31□□□□□ -2.36
CUL3-211ENST00000487558 SPRR2EP22531 72 aa0.3□□□□□ -2.36
CUL3-211ENST00000487558 RPL39LQ96EH5 51 aaKnown RBP0.3□□□□□ -2.36
CUL3-211ENST00000487558 MGAM2Q2M2H8 2515 aa0.3□□□□□ -2.36
CUL3-211ENST00000487558 ANK3Q12955 4377 aaKnown RBP0.3□□□□□ -2.36
CUL3-211ENST00000487558 DCHS1Q96JQ0 3298 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 DNAH12Q6ZR08 3092 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 DNAH11Q96DT5 4516 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 MYO15AQ9UKN7 3530 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 DNAH2Q9P225 4427 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 DNAH9Q9NYC9 4486 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 CRYBG3Q68DQ2 2970 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 LRP1BQ9NZR2 4599 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 NBPF19A0A087WUL8 3843 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 WDFY3Q8IZQ1 3526 aa0.29□□□□□ -2.36
CUL3-211ENST00000487558 DNAH14Q0VDD8 3507 aa0.28□□□□□ -2.36
CUL3-211ENST00000487558 SVEP1Q4LDE5 3571 aa0.28□□□□□ -2.36
CUL3-211ENST00000487558 LRP2P98164 4655 aa0.28□□□□□ -2.36
CUL3-211ENST00000487558 TEX15Q9BXT5 2789 aa0.28□□□□□ -2.36
CUL3-211ENST00000487558 KRTAP20-1Q3LI63 56 aa0.28□□□□□ -2.36
CUL3-211ENST00000487558 CSMD2Q7Z408 3487 aa0.28□□□□□ -2.36
CUL3-211ENST00000487558 GOLGB1Q14789 3259 aaKnown RBP0.28□□□□□ -2.37
CUL3-211ENST00000487558 ITPR1Q14643 2758 aa0.28□□□□□ -2.37
CUL3-211ENST00000487558 WDR87Q6ZQQ6 2873 aa0.27□□□□□ -2.37
CUL3-211ENST00000487558 SMG1Q96Q15 3661 aaKnown RBP0.27□□□□□ -2.37
CUL3-211ENST00000487558 ITPR2Q14571 2701 aa0.27□□□□□ -2.37
CUL3-211ENST00000487558 DYNC2H1Q8NCM8 4307 aaKnown RBP0.27□□□□□ -2.37
CUL3-211ENST00000487558 CDH23Q9H251 3354 aa0.26□□□□□ -2.37
CUL3-211ENST00000487558 CFAP54Q96N23 3096 aa0.26□□□□□ -2.37
CUL3-211ENST00000487558 SPENQ96T58 3664 aaKnown RBP0.25□□□□□ -2.37
CUL3-211ENST00000487558 NIPBLQ6KC79 2804 aaeCLIP0.25□□□□□ -2.37
CUL3-211ENST00000487558 TLN1Q9Y490 2541 aaKnown RBP0.25□□□□□ -2.37
CUL3-211ENST00000487558 DNAH7Q8WXX0 4024 aa0.25□□□□□ -2.37
CUL3-211ENST00000487558 KRTAP8-1Q8IUC2 63 aa0.25□□□□□ -2.37
CUL3-211ENST00000487558 SPRR2FQ96RM1 72 aa0.25□□□□□ -2.37
CUL3-211ENST00000487558 LRBAP50851 2863 aa0.25□□□□□ -2.37
CUL3-211ENST00000487558 SPTAN1Q13813 2472 aaKnown RBP0.25□□□□□ -2.37
CUL3-211ENST00000487558 XIRP2A4UGR9 3374 aa0.25□□□□□ -2.37
CUL3-211ENST00000487558 DNAH6Q9C0G6 4158 aa0.24□□□□□ -2.37
CUL3-211ENST00000487558 DMXL2Q8TDJ6 3036 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms