RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 A0A0D9SG42 100 aa5.57□□□□□ -1.52
CCDC171-208ENST00000486641 KRTAP10-6P60371 365 aaPredicted RBP5.57□□□□□ -1.52
CCDC171-208ENST00000486641 KRTAP15-1Q3LI76 137 aa5.56□□□□□ -1.52
CCDC171-208ENST00000486641 NDUFAF8A1L188 74 aa5.55□□□□□ -1.52
CCDC171-208ENST00000486641 SACSQ9NZJ4 4579 aa5.52□□□□□ -1.53
CCDC171-208ENST00000486641 HYDINQ4G0P3 5121 aa5.49□□□□□ -1.53
CCDC171-208ENST00000486641 DMBT1Q9UGM3 2413 aaPredicted RBP5.47□□□□□ -1.53
CCDC171-208ENST00000486641 PKHD1L1Q86WI1 4243 aa5.45□□□□□ -1.54
CCDC171-208ENST00000486641 S4R3F8 94 aa5.44□□□□□ -1.54
CCDC171-208ENST00000486641 KRTAP12-2P59991 146 aa5.43□□□□□ -1.54
CCDC171-208ENST00000486641 PKHD1P08F94 4074 aa5.41□□□□□ -1.54
CCDC171-208ENST00000486641 SMR3BP02814 79 aaPredicted RBP5.4□□□□□ -1.55
CCDC171-208ENST00000486641 APOBP04114 4563 aaKnown RBP5.35□□□□□ -1.55
CCDC171-208ENST00000486641 KRTAP12-1P59990 96 aa5.35□□□□□ -1.55
CCDC171-208ENST00000486641 KRTAP10-8P60410 259 aa5.35□□□□□ -1.55
CCDC171-208ENST00000486641 XP32Q5T750 250 aa5.33□□□□□ -1.56
CCDC171-208ENST00000486641 FAT1Q14517 4588 aa5.33□□□□□ -1.56
CCDC171-208ENST00000486641 DYNC1H1Q14204 4646 aaKnown RBP5.31□□□□□ -1.56
CCDC171-208ENST00000486641 HSPG2P98160 4391 aa5.3□□□□□ -1.56
CCDC171-208ENST00000486641 KRTAP10-4P60372 401 aaPredicted RBP5.29□□□□□ -1.56
CCDC171-208ENST00000486641 FAT3Q8TDW7 4589 aa5.28□□□□□ -1.56
CCDC171-208ENST00000486641 LRP1Q07954 4544 aaKnown RBP5.28□□□□□ -1.56
CCDC171-208ENST00000486641 LCE2BO14633 110 aa5.25□□□□□ -1.57
CCDC171-208ENST00000486641 TNXBP22105 4242 aa5.21□□□□□ -1.57
CCDC171-208ENST00000486641 A0A0A0MQY5 61 aa5.2□□□□□ -1.58
CCDC171-208ENST00000486641 M0QZ58 72 aa5.19□□□□□ -1.58
CCDC171-208ENST00000486641 PLAC4Q8WY50 150 aa5.14□□□□□ -1.59
CCDC171-208ENST00000486641 MYCBP2O75592 4640 aa5.14□□□□□ -1.59
CCDC171-208ENST00000486641 LCE2CQ5TA81 110 aa5.11□□□□□ -1.59
CCDC171-208ENST00000486641 LPAP08519 4548 aa5.1□□□□□ -1.59
CCDC171-208ENST00000486641 LUZP6Q538Z0 58 aa5.1□□□□□ -1.59
CCDC171-208ENST00000486641 A0A1B0GVY2 172 aa5.09□□□□□ -1.59
CCDC171-208ENST00000486641 RYR2Q92736 4967 aa5.06□□□□□ -1.6
CCDC171-208ENST00000486641 LCE2AQ5TA79 106 aaPredicted RBP5.04□□□□□ -1.6
CCDC171-208ENST00000486641 KMT2CQ8NEZ4 4911 aaKnown RBP5.03□□□□□ -1.6
CCDC171-208ENST00000486641 R4GN34 69 aa5.01□□□□□ -1.61
CCDC171-208ENST00000486641 KRTAP4-8Q9BYQ9 185 aa4.96□□□□□ -1.62
CCDC171-208ENST00000486641 LRP2P98164 4655 aa4.95□□□□□ -1.62
CCDC171-208ENST00000486641 LORP23490 312 aaPredicted RBP4.95□□□□□ -1.62
CCDC171-208ENST00000486641 RYR3Q15413 4870 aa4.93□□□□□ -1.62
CCDC171-208ENST00000486641 Q5VSD8 79 aa4.91□□□□□ -1.62
CCDC171-208ENST00000486641 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.88□□□□□ -1.63
CCDC171-208ENST00000486641 PP632Q6XCG6 107 aa4.88□□□□□ -1.63
CCDC171-208ENST00000486641 KRTAP9-2Q9BYQ4 174 aa4.85□□□□□ -1.63
CCDC171-208ENST00000486641 KRTAP9-6A0A140TA67 174 aa4.84□□□□□ -1.63
CCDC171-208ENST00000486641 MT1HL1P0DM35 61 aa4.84□□□□□ -1.63
CCDC171-208ENST00000486641 KRTAP17-1Q9BYP8 105 aa4.83□□□□□ -1.64
CCDC171-208ENST00000486641 CAMK2N1Q7Z7J9 78 aa4.79□□□□□ -1.64
CCDC171-208ENST00000486641 EPPK1P58107 5090 aaKnown RBP4.77□□□□□ -1.65
CCDC171-208ENST00000486641 RYR1P21817 5038 aa4.76□□□□□ -1.65
CCDC171-208ENST00000486641 MUC17Q685J3 4493 aa4.75□□□□□ -1.65
CCDC171-208ENST00000486641 KIAA1109Q2LD37 5005 aa4.74□□□□□ -1.65
CCDC171-208ENST00000486641 KRTAP4-8A0A0G2JLE6 195 aa4.72□□□□□ -1.65
CCDC171-208ENST00000486641 SPRR5A0A1B0GTR4 108 aa4.71□□□□□ -1.66
CCDC171-208ENST00000486641 ABCA13Q86UQ4 5058 aa4.67□□□□□ -1.66
CCDC171-208ENST00000486641 LCE3BQ5TA77 95 aa4.66□□□□□ -1.66
CCDC171-208ENST00000486641 KRTAP4-1Q9BYQ7 146 aa4.66□□□□□ -1.66
CCDC171-208ENST00000486641 TNP1P09430 55 aa4.65□□□□□ -1.66
CCDC171-208ENST00000486641 KRTAP4-5Q9BYR2 181 aa4.63□□□□□ -1.67
CCDC171-208ENST00000486641 KRTAP23-1A1A580 65 aa4.63□□□□□ -1.67
CCDC171-208ENST00000486641 SEC61BP60468 96 aaKnown RBP4.62□□□□□ -1.67
CCDC171-208ENST00000486641 KRTAP4-7Q9BYR0 210 aa4.61□□□□□ -1.67
CCDC171-208ENST00000486641 KRTAP9-9Q9BYP9 154 aa4.61□□□□□ -1.67
CCDC171-208ENST00000486641 KRTAP9-4Q9BYQ2 154 aa4.61□□□□□ -1.67
CCDC171-208ENST00000486641 KRTAP19-2Q3LHN2 52 aa4.6□□□□□ -1.67
CCDC171-208ENST00000486641 BIRC6Q9NR09 4857 aa4.57□□□□□ -1.68
CCDC171-208ENST00000486641 HERC2O95714 4834 aa4.52□□□□□ -1.69
CCDC171-208ENST00000486641 PRO2289Q9P1D8 64 aa4.51□□□□□ -1.69
CCDC171-208ENST00000486641 KRTAP5-3Q6L8H2 238 aa4.5□□□□□ -1.69
CCDC171-208ENST00000486641 KRTAP9-8Q9BYQ0 159 aa4.49□□□□□ -1.69
CCDC171-208ENST00000486641 FLGP20930 4061 aaPredicted RBP4.44□□□□□ -1.7
CCDC171-208ENST00000486641 MUC2Q02817 5179 aa4.43□□□□□ -1.7
CCDC171-208ENST00000486641 HERC1Q15751 4861 aa4.43□□□□□ -1.7
CCDC171-208ENST00000486641 KRTAP4-12Q9BQ66 201 aa4.42□□□□□ -1.7
CCDC171-208ENST00000486641 KRTAP4-2Q9BYR5 136 aa4.41□□□□□ -1.7
CCDC171-208ENST00000486641 LCE3AQ5TA76 89 aa4.4□□□□□ -1.71
CCDC171-208ENST00000486641 INE1O15225 51 aa4.39□□□□□ -1.71
CCDC171-208ENST00000486641 LCE1DQ5T752 114 aa4.37□□□□□ -1.71
CCDC171-208ENST00000486641 PCLOQ9Y6V0 5065 aa4.36□□□□□ -1.71
CCDC171-208ENST00000486641 KRTAP4-9Q9BYQ8 210 aa4.34□□□□□ -1.71
CCDC171-208ENST00000486641 SPRR2GQ9BYE4 73 aa4.3□□□□□ -1.72
CCDC171-208ENST00000486641 KRTAP19-1Q8IUB9 90 aa4.29□□□□□ -1.72
CCDC171-208ENST00000486641 KRTAP8-1Q8IUC2 63 aa4.26□□□□□ -1.73
CCDC171-208ENST00000486641 HMCN2Q8NDA2 5059 aa4.19□□□□□ -1.74
CCDC171-208ENST00000486641 FAT4Q6V0I7 4981 aa4.18□□□□□ -1.74
CCDC171-208ENST00000486641 KRTAP10-12P60413 245 aa4.16□□□□□ -1.74
CCDC171-208ENST00000486641 KRTAP12-3P60328 96 aa4.15□□□□□ -1.74
CCDC171-208ENST00000486641 KRTAP10-5P60370 271 aa4.1□□□□□ -1.75
CCDC171-208ENST00000486641 M0R2T5 61 aa4.09□□□□□ -1.75
CCDC171-208ENST00000486641 UBR4Q5T4S7 5183 aa4.09□□□□□ -1.76
CCDC171-208ENST00000486641 MT1FP04733 61 aa4.08□□□□□ -1.76
CCDC171-208ENST00000486641 KRTAP10-10P60014 251 aa4.07□□□□□ -1.76
CCDC171-208ENST00000486641 MT1XP80297 61 aa4.07□□□□□ -1.76
CCDC171-208ENST00000486641 MT2AP02795 61 aa4.05□□□□□ -1.76
CCDC171-208ENST00000486641 KRTAP19-8Q3LI54 63 aa4.05□□□□□ -1.76
CCDC171-208ENST00000486641 KRTAP4-11Q9BYQ6 195 aa4.05□□□□□ -1.76
CCDC171-208ENST00000486641 MT1HP80294 61 aa4.03□□□□□ -1.77
CCDC171-208ENST00000486641 MT1BP07438 61 aa4.02□□□□□ -1.77
CCDC171-208ENST00000486641 KRTAP10-7P60409 375 aaPredicted RBP4.01□□□□□ -1.77
CCDC171-208ENST00000486641 RNF213Q63HN8 5207 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms