RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 SSBP3-AS1Q7Z2R9 100 aa2.89□□□□□ -1.95
CCDC39-205ENST00000485055 IGLV6-57P01721 117 aa2.89□□□□□ -1.95
CCDC39-205ENST00000485055 JMJD7-PLA2G4BH0Y9G9 81 aa2.88□□□□□ -1.95
CCDC39-205ENST00000485055 LCE3BQ5TA77 95 aa2.88□□□□□ -1.95
CCDC39-205ENST00000485055 TOMM7Q9P0U1 55 aa2.88□□□□□ -1.95
CCDC39-205ENST00000485055 SPINK1P00995 79 aa2.87□□□□□ -1.95
CCDC39-205ENST00000485055 NREPQ16612 68 aa2.86□□□□□ -1.95
CCDC39-205ENST00000485055 LINC00846Q9NV44 126 aa2.85□□□□□ -1.95
CCDC39-205ENST00000485055 KRTAP13-3Q3SY46 172 aa2.85□□□□□ -1.95
CCDC39-205ENST00000485055 Q6ZRX8 168 aa2.85□□□□□ -1.95
CCDC39-205ENST00000485055 LINC00208Q96KT6 92 aa2.85□□□□□ -1.95
CCDC39-205ENST00000485055 UBR4Q5T4S7 5183 aa2.83□□□□□ -1.96
CCDC39-205ENST00000485055 LINC00158P58513 81 aa2.82□□□□□ -1.96
CCDC39-205ENST00000485055 Q96NJ1 140 aa2.82□□□□□ -1.96
CCDC39-205ENST00000485055 IGLV5-48A0A075B6I7 105 aa2.82□□□□□ -1.96
CCDC39-205ENST00000485055 UQCR11O14957 56 aa2.82□□□□□ -1.96
CCDC39-205ENST00000485055 RNF213Q63HN8 5207 aa2.81□□□□□ -1.96
CCDC39-205ENST00000485055 LRP2P98164 4655 aa2.81□□□□□ -1.96
CCDC39-205ENST00000485055 H0Y9P7 68 aa2.81□□□□□ -1.96
CCDC39-205ENST00000485055 IGKV4-1P06312 121 aa2.81□□□□□ -1.96
CCDC39-205ENST00000485055 LCE5AQ5TCM9 118 aa2.81□□□□□ -1.96
CCDC39-205ENST00000485055 IGKV2-28A0A075B6P5 120 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 ETDCA0A1B0GVM5 59 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 IGKV2D-28P01615 120 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 PRLHP81277 87 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 KRTAP9-9Q9BYP9 154 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 KRTAP9-4Q9BYQ2 154 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 LINC00472Q9H8W2 130 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 LINC00308Q8TCZ7 52 aa2.8□□□□□ -1.96
CCDC39-205ENST00000485055 DSCR10P59022 87 aa2.79□□□□□ -1.96
CCDC39-205ENST00000485055 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
CCDC39-205ENST00000485055 LPAP08519 4548 aa2.78□□□□□ -1.96
CCDC39-205ENST00000485055 KRTAP19-4Q3LI73 84 aa2.78□□□□□ -1.96
CCDC39-205ENST00000485055 NCR3O14931 201 aa2.77□□□□□ -1.97
CCDC39-205ENST00000485055 KRTAP19-2Q3LHN2 52 aa2.77□□□□□ -1.97
CCDC39-205ENST00000485055 SPATA8Q6RVD6 105 aa2.76□□□□□ -1.97
CCDC39-205ENST00000485055 ANAPC11Q9NYG5 84 aa2.76□□□□□ -1.97
CCDC39-205ENST00000485055 COX7BP24311 80 aa2.75□□□□□ -1.97
CCDC39-205ENST00000485055 KRTAP4-9Q9BYQ8 210 aa2.75□□□□□ -1.97
CCDC39-205ENST00000485055 NDUFB1O75438 58 aa2.74□□□□□ -1.97
CCDC39-205ENST00000485055 LCE1DQ5T752 114 aa2.73□□□□□ -1.97
CCDC39-205ENST00000485055 ZCCHC13Q8WW36 166 aaKnown RBP2.73□□□□□ -1.97
CCDC39-205ENST00000485055 UBL5Q9BZL1 73 aa2.73□□□□□ -1.97
CCDC39-205ENST00000485055 KRTAP4-1Q9BYQ7 146 aa2.73□□□□□ -1.97
CCDC39-205ENST00000485055 ACYP2P14621 99 aa2.71□□□□□ -1.97
CCDC39-205ENST00000485055 LINC00575Q6W349 94 aa2.71□□□□□ -1.97
CCDC39-205ENST00000485055 Q8N9L7 120 aa2.71□□□□□ -1.98
CCDC39-205ENST00000485055 RPL37P61927 97 aaKnown RBP2.7□□□□□ -1.98
CCDC39-205ENST00000485055 OBSCN-AS1Q96MR7 158 aa2.7□□□□□ -1.98
CCDC39-205ENST00000485055 FAT4Q6V0I7 4981 aa2.7□□□□□ -1.98
CCDC39-205ENST00000485055 LOC110117498A0A087WWA1 95 aa2.7□□□□□ -1.98
CCDC39-205ENST00000485055 SMIM11BQ8TCY0 68 aa2.69□□□□□ -1.98
CCDC39-205ENST00000485055 A0A1B0GU69 56 aa2.68□□□□□ -1.98
CCDC39-205ENST00000485055 COA5Q86WW8 74 aa2.68□□□□□ -1.98
CCDC39-205ENST00000485055 H0YGX0 51 aa2.67□□□□□ -1.98
CCDC39-205ENST00000485055 MT1HP80294 61 aa2.67□□□□□ -1.98
CCDC39-205ENST00000485055 FLGP20930 4061 aaPredicted RBP2.64□□□□□ -1.99
CCDC39-205ENST00000485055 IGFL1Q6UW32 110 aa2.64□□□□□ -1.99
CCDC39-205ENST00000485055 KRTAP4-12Q9BQ66 201 aa2.64□□□□□ -1.99
CCDC39-205ENST00000485055 KRTAP10-6P60371 365 aaPredicted RBP2.63□□□□□ -1.99
CCDC39-205ENST00000485055 INE1O15225 51 aa2.63□□□□□ -1.99
CCDC39-205ENST00000485055 Q6ZQY7 126 aa2.62□□□□□ -1.99
CCDC39-205ENST00000485055 PCOTHQ58A44 107 aa2.62□□□□□ -1.99
CCDC39-205ENST00000485055 KRTAP9-7A8MTY7 169 aa2.6□□□□□ -1.99
CCDC39-205ENST00000485055 LCE4AQ5TA78 99 aa2.59□□□□□ -1.99
CCDC39-205ENST00000485055 CRIPTQ9P021 101 aa2.59□□□□□ -1.99
CCDC39-205ENST00000485055 CRCT1Q9UGL9 99 aa2.59□□□□□ -2
CCDC39-205ENST00000485055 DEFB105AQ8NG35 78 aa2.58□□□□□ -2
CCDC39-205ENST00000485055 MUC2Q02817 5179 aa2.58□□□□□ -2
CCDC39-205ENST00000485055 C9orf92A6NGG3 77 aa2.55□□□□□ -2
CCDC39-205ENST00000485055 LCE1FQ5T754 118 aa2.55□□□□□ -2
CCDC39-205ENST00000485055 KRTAP2-2Q9BYT5 123 aa2.55□□□□□ -2
CCDC39-205ENST00000485055 PLAC4Q8WY50 150 aa2.53□□□□□ -2
CCDC39-205ENST00000485055 KRTAP9-3Q9BYQ3 159 aa2.5□□□□□ -2.01
CCDC39-205ENST00000485055 WFDC13Q8IUB5 93 aa2.49□□□□□ -2.01
CCDC39-205ENST00000485055 KRTAP4-11Q9BYQ6 195 aa2.49□□□□□ -2.01
CCDC39-205ENST00000485055 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
CCDC39-205ENST00000485055 MT2AP02795 61 aa2.48□□□□□ -2.01
CCDC39-205ENST00000485055 COX6B2Q6YFQ2 88 aa2.47□□□□□ -2.01
CCDC39-205ENST00000485055 PP632Q6XCG6 107 aa2.46□□□□□ -2.02
CCDC39-205ENST00000485055 KRTAP19-6Q3LI70 58 aa2.45□□□□□ -2.02
CCDC39-205ENST00000485055 MT1FP04733 61 aa2.43□□□□□ -2.02
CCDC39-205ENST00000485055 M0R2T5 61 aa2.43□□□□□ -2.02
CCDC39-205ENST00000485055 LCE1AQ5T7P2 110 aa2.43□□□□□ -2.02
CCDC39-205ENST00000485055 KRTAP12-2P59991 146 aa2.42□□□□□ -2.02
CCDC39-205ENST00000485055 MMP24-AS1A0A0U1RRL7 71 aa2.42□□□□□ -2.02
CCDC39-205ENST00000485055 MRPL34Q9BQ48 92 aaKnown RBP2.4□□□□□ -2.02
CCDC39-205ENST00000485055 H1FX-AS1Q4G0G2 97 aa2.39□□□□□ -2.03
CCDC39-205ENST00000485055 KRTAP13-4Q3LI77 160 aa2.39□□□□□ -2.03
CCDC39-205ENST00000485055 KRTAP19-1Q8IUB9 90 aa2.38□□□□□ -2.03
CCDC39-205ENST00000485055 LCE3CQ5T5A8 94 aa2.37□□□□□ -2.03
CCDC39-205ENST00000485055 KRTAP19-8Q3LI54 63 aa2.35□□□□□ -2.03
CCDC39-205ENST00000485055 C10orf95Q9H7T3 257 aa2.35□□□□□ -2.03
CCDC39-205ENST00000485055 SSPOA2VEC9 5147 aa2.35□□□□□ -2.03
CCDC39-205ENST00000485055 KRTAP10-10P60014 251 aa2.35□□□□□ -2.03
CCDC39-205ENST00000485055 KRTAP6-3Q3LI67 103 aa2.35□□□□□ -2.03
CCDC39-205ENST00000485055 TP53AIP1Q9HCN2 124 aa2.34□□□□□ -2.03
CCDC39-205ENST00000485055 USH2AO75445 5202 aa2.34□□□□□ -2.03
CCDC39-205ENST00000485055 SPRR2GQ9BYE4 73 aa2.34□□□□□ -2.04
CCDC39-205ENST00000485055 K7EQZ3 153 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms