RNA–Protein interactions for RNA: ENST00000479510.2

SYNGAP1-206, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 2

Gene SYNGAP1, Length 2,073 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-206ENST00000479510 TNXBP22105 4242 aa12.72□□□□□ -0.37
SYNGAP1-206ENST00000479510 XP32Q5T750 250 aa12.69□□□□□ -0.38
SYNGAP1-206ENST00000479510 K7ERS5 55 aa12.66□□□□□ -0.38
SYNGAP1-206ENST00000479510 KRTAP3-3Q9BYR6 98 aa12.65□□□□□ -0.39
SYNGAP1-206ENST00000479510 KRTAP10-6P60371 365 aaPredicted RBP12.57□□□□□ -0.4
SYNGAP1-206ENST00000479510 S4R3F8 94 aa12.57□□□□□ -0.4
SYNGAP1-206ENST00000479510 LRP1Q07954 4544 aaKnown RBP12.54□□□□□ -0.4
SYNGAP1-206ENST00000479510 HSPG2P98160 4391 aa12.53□□□□□ -0.4
SYNGAP1-206ENST00000479510 KRTAP3-2Q9BYR7 98 aa12.48□□□□□ -0.41
SYNGAP1-206ENST00000479510 KRTAP25-1Q3LHN0 102 aa12.47□□□□□ -0.41
SYNGAP1-206ENST00000479510 MT1HL1P0DM35 61 aa12.46□□□□□ -0.42
SYNGAP1-206ENST00000479510 RYR1P21817 5038 aa12.45□□□□□ -0.42
SYNGAP1-206ENST00000479510 DMBT1Q9UGM3 2413 aaPredicted RBP12.42□□□□□ -0.42
SYNGAP1-206ENST00000479510 EPPK1P58107 5090 aaKnown RBP12.38□□□□□ -0.43
SYNGAP1-206ENST00000479510 KRTAP13-4Q3LI77 160 aa12.35□□□□□ -0.43
SYNGAP1-206ENST00000479510 KRTAP17-1Q9BYP8 105 aa12.35□□□□□ -0.43
SYNGAP1-206ENST00000479510 KIAA1109Q2LD37 5005 aa12.33□□□□□ -0.44
SYNGAP1-206ENST00000479510 ROMO1P60602 79 aa12.32□□□□□ -0.44
SYNGAP1-206ENST00000479510 TPRXLQ17RH7 258 aa12.3□□□□□ -0.44
SYNGAP1-206ENST00000479510 P0C880 135 aa12.24□□□□□ -0.45
SYNGAP1-206ENST00000479510 A0A0D9SG42 100 aa12.22□□□□□ -0.45
SYNGAP1-206ENST00000479510 MYCBP2O75592 4640 aa12.17□□□□□ -0.46
SYNGAP1-206ENST00000479510 M0QZ58 72 aa12.06□□□□□ -0.48
SYNGAP1-206ENST00000479510 CRIPTQ9P021 101 aa12.04□□□□□ -0.48
SYNGAP1-206ENST00000479510 KRTAP12-2P59991 146 aa11.98□□□□□ -0.49
SYNGAP1-206ENST00000479510 KRTAP12-1P59990 96 aa11.95□□□□□ -0.5
SYNGAP1-206ENST00000479510 KRTAP4-5Q9BYR2 181 aa11.9□□□□□ -0.51
SYNGAP1-206ENST00000479510 H3BS24 57 aa11.87□□□□□ -0.51
SYNGAP1-206ENST00000479510 LRP2P98164 4655 aa11.86□□□□□ -0.51
SYNGAP1-206ENST00000479510 SEC61BP60468 96 aaKnown RBP11.85□□□□□ -0.51
SYNGAP1-206ENST00000479510 SPINT4Q6UDR6 99 aa11.85□□□□□ -0.51
SYNGAP1-206ENST00000479510 BIRC6Q9NR09 4857 aa11.83□□□□□ -0.52
SYNGAP1-206ENST00000479510 LPAP08519 4548 aa11.8□□□□□ -0.52
SYNGAP1-206ENST00000479510 HERC2O95714 4834 aa11.72□□□□□ -0.53
SYNGAP1-206ENST00000479510 ABCA13Q86UQ4 5058 aa11.72□□□□□ -0.53
SYNGAP1-206ENST00000479510 C10orf95Q9H7T3 257 aa11.68□□□□□ -0.54
SYNGAP1-206ENST00000479510 R4GN34 69 aa11.63□□□□□ -0.55
SYNGAP1-206ENST00000479510 J3QL48 77 aa11.52□□□□□ -0.57
SYNGAP1-206ENST00000479510 KRTAP4-1Q9BYQ7 146 aa11.5□□□□□ -0.57
SYNGAP1-206ENST00000479510 MUC17Q685J3 4493 aa11.49□□□□□ -0.57
SYNGAP1-206ENST00000479510 KRTAP19-2Q3LHN2 52 aa11.42□□□□□ -0.58
SYNGAP1-206ENST00000479510 KRTAP15-1Q3LI76 137 aa11.36□□□□□ -0.59
SYNGAP1-206ENST00000479510 LORP23490 312 aaPredicted RBP11.36□□□□□ -0.59
SYNGAP1-206ENST00000479510 PCLOQ9Y6V0 5065 aa11.21□□□□□ -0.61
SYNGAP1-206ENST00000479510 HERC1Q15751 4861 aa11.11□□□□□ -0.63
SYNGAP1-206ENST00000479510 PP632Q6XCG6 107 aa11.04□□□□□ -0.64
SYNGAP1-206ENST00000479510 CAMK2N1Q7Z7J9 78 aa11.04□□□□□ -0.64
SYNGAP1-206ENST00000479510 FLGP20930 4061 aaPredicted RBP10.99□□□□□ -0.65
SYNGAP1-206ENST00000479510 NDUFAF8A1L188 74 aa10.97□□□□□ -0.65
SYNGAP1-206ENST00000479510 HMCN2Q8NDA2 5059 aa10.96□□□□□ -0.66
SYNGAP1-206ENST00000479510 PLAC4Q8WY50 150 aa10.89□□□□□ -0.67
SYNGAP1-206ENST00000479510 KRTAP23-1A1A580 65 aa10.75□□□□□ -0.69
SYNGAP1-206ENST00000479510 TNP1P09430 55 aa10.7□□□□□ -0.7
SYNGAP1-206ENST00000479510 LCE2CQ5TA81 110 aa10.69□□□□□ -0.7
SYNGAP1-206ENST00000479510 MUC2Q02817 5179 aa10.68□□□□□ -0.7
SYNGAP1-206ENST00000479510 SPRR2GQ9BYE4 73 aa10.62□□□□□ -0.71
SYNGAP1-206ENST00000479510 KRTAP19-1Q8IUB9 90 aa10.46□□□□□ -0.73
SYNGAP1-206ENST00000479510 UBR4Q5T4S7 5183 aa10.45□□□□□ -0.74
SYNGAP1-206ENST00000479510 LUZP6Q538Z0 58 aa10.42□□□□□ -0.74
SYNGAP1-206ENST00000479510 MT1HP80294 61 aa10.39□□□□□ -0.75
SYNGAP1-206ENST00000479510 M0R2T5 61 aa10.38□□□□□ -0.75
SYNGAP1-206ENST00000479510 RNF213Q63HN8 5207 aa10.35□□□□□ -0.75
SYNGAP1-206ENST00000479510 FAT4Q6V0I7 4981 aa10.26□□□□□ -0.77
SYNGAP1-206ENST00000479510 MT2AP02795 61 aa10.25□□□□□ -0.77
SYNGAP1-206ENST00000479510 SPRR5A0A1B0GTR4 108 aa10.24□□□□□ -0.77
SYNGAP1-206ENST00000479510 MT1FP04733 61 aa10.21□□□□□ -0.77
SYNGAP1-206ENST00000479510 KRTAP10-10P60014 251 aa10.21□□□□□ -0.78
SYNGAP1-206ENST00000479510 A0A0A0MQY5 61 aa10.19□□□□□ -0.78
SYNGAP1-206ENST00000479510 KRTAP9-8Q9BYQ0 159 aa10.18□□□□□ -0.78
SYNGAP1-206ENST00000479510 KRTAP19-8Q3LI54 63 aa10.16□□□□□ -0.78
SYNGAP1-206ENST00000479510 LCE3AQ5TA76 89 aa10.03□□□□□ -0.8
SYNGAP1-206ENST00000479510 MT1BP07438 61 aa9.92□□□□□ -0.82
SYNGAP1-206ENST00000479510 KRTAP8-1Q8IUC2 63 aa9.92□□□□□ -0.82
SYNGAP1-206ENST00000479510 KRTAP10-5P60370 271 aa9.87□□□□□ -0.83
SYNGAP1-206ENST00000479510 MT1XP80297 61 aa9.86□□□□□ -0.83
SYNGAP1-206ENST00000479510 KRTAP9-3Q9BYQ3 159 aa9.77□□□□□ -0.85
SYNGAP1-206ENST00000479510 KRTAP10-12P60413 245 aa9.7□□□□□ -0.86
SYNGAP1-206ENST00000479510 KRTAP12-3P60328 96 aa9.61□□□□□ -0.87
SYNGAP1-206ENST00000479510 PRO2289Q9P1D8 64 aa9.61□□□□□ -0.87
SYNGAP1-206ENST00000479510 KRTAP10-7P60409 375 aaPredicted RBP9.51□□□□□ -0.89
SYNGAP1-206ENST00000479510 LCE2AQ5TA79 106 aaPredicted RBP9.51□□□□□ -0.89
SYNGAP1-206ENST00000479510 LCE2BO14633 110 aa9.3□□□□□ -0.92
SYNGAP1-206ENST00000479510 KRTAP19-5Q3LI72 72 aa9.16□□□□□ -0.94
SYNGAP1-206ENST00000479510 INE1O15225 51 aa9.06□□□□□ -0.96
SYNGAP1-206ENST00000479510 LCE3CQ5T5A8 94 aa9.06□□□□□ -0.96
SYNGAP1-206ENST00000479510 KRTAP19-4Q3LI73 84 aa8.89□□□□□ -0.99
SYNGAP1-206ENST00000479510 USH2AO75445 5202 aa8.86□□□□□ -0.99
SYNGAP1-206ENST00000479510 KRTAP4-8A0A0G2JLE6 195 aa8.84□□□□□ -0.99
SYNGAP1-206ENST00000479510 KRTAP4-8Q9BYQ9 185 aa8.84□□□□□ -0.99
SYNGAP1-206ENST00000479510 KRTAP19-7Q3SYF9 63 aa8.78□□□□□ -1
SYNGAP1-206ENST00000479510 KRTAP9-2Q9BYQ4 174 aa8.68□□□□□ -1.02
SYNGAP1-206ENST00000479510 KRTAP9-6A8MVA2 160 aa8.63□□□□□ -1.03
SYNGAP1-206ENST00000479510 MT1EP04732 61 aa8.55□□□□□ -1.04
SYNGAP1-206ENST00000479510 MT1LQ93083 61 aa8.55□□□□□ -1.04
SYNGAP1-206ENST00000479510 KMT2DO14686 5537 aa8.55□□□□□ -1.04
SYNGAP1-206ENST00000479510 LCE2DQ5TA82 110 aaPredicted RBP8.54□□□□□ -1.04
SYNGAP1-206ENST00000479510 SSPOA2VEC9 5147 aa8.54□□□□□ -1.04
SYNGAP1-206ENST00000479510 FSIP2Q5CZC0 6907 aa8.5□□□□□ -1.05
SYNGAP1-206ENST00000479510 KRTAP2-3P0C7H8 128 aa8.48□□□□□ -1.05
SYNGAP1-206ENST00000479510 KRTAP2-4Q9BYR9 128 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms