RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 KRTAP3-3Q9BYR6 98 aa10.91□□□□□ -0.66
SDF4-206ENST00000478938 KRTAP10-1P60331 282 aa10.84□□□□□ -0.67
SDF4-206ENST00000478938 XP32Q5T750 250 aa10.8□□□□□ -0.68
SDF4-206ENST00000478938 FAT2Q9NYQ8 4349 aa10.76□□□□□ -0.69
SDF4-206ENST00000478938 KRTAP12-1P59990 96 aa10.75□□□□□ -0.69
SDF4-206ENST00000478938 RPS29P62273 56 aaKnown RBP10.75□□□□□ -0.69
SDF4-206ENST00000478938 HYDINQ4G0P3 5121 aa10.74□□□□□ -0.69
SDF4-206ENST00000478938 PKD1P98161 4303 aa10.71□□□□□ -0.69
SDF4-206ENST00000478938 PLAC4Q8WY50 150 aa10.55□□□□□ -0.72
SDF4-206ENST00000478938 SACSQ9NZJ4 4579 aa10.55□□□□□ -0.72
SDF4-206ENST00000478938 PKHD1P08F94 4074 aa10.54□□□□□ -0.72
SDF4-206ENST00000478938 KRTAP10-8P60410 259 aa10.52□□□□□ -0.73
SDF4-206ENST00000478938 PKHD1L1Q86WI1 4243 aa10.47□□□□□ -0.73
SDF4-206ENST00000478938 KMT2CQ8NEZ4 4911 aaKnown RBP10.42□□□□□ -0.74
SDF4-206ENST00000478938 RYR2Q92736 4967 aa10.4□□□□□ -0.74
SDF4-206ENST00000478938 SMR3BP02814 79 aaPredicted RBP10.33□□□□□ -0.76
SDF4-206ENST00000478938 APOBP04114 4563 aaKnown RBP10.31□□□□□ -0.76
SDF4-206ENST00000478938 HSPG2P98160 4391 aa10.31□□□□□ -0.76
SDF4-206ENST00000478938 M0QZ58 72 aa10.28□□□□□ -0.76
SDF4-206ENST00000478938 RYR3Q15413 4870 aa10.26□□□□□ -0.77
SDF4-206ENST00000478938 LRP1Q07954 4544 aaKnown RBP10.24□□□□□ -0.77
SDF4-206ENST00000478938 FAT1Q14517 4588 aa10.24□□□□□ -0.77
SDF4-206ENST00000478938 MYCBP2O75592 4640 aa10.19□□□□□ -0.78
SDF4-206ENST00000478938 DYNC1H1Q14204 4646 aaKnown RBP10.18□□□□□ -0.78
SDF4-206ENST00000478938 A0A1B0GVY2 172 aa10.17□□□□□ -0.78
SDF4-206ENST00000478938 FAT3Q8TDW7 4589 aa10.12□□□□□ -0.79
SDF4-206ENST00000478938 KRTAP10-4P60372 401 aaPredicted RBP10.05□□□□□ -0.8
SDF4-206ENST00000478938 TNXBP22105 4242 aa10.04□□□□□ -0.8
SDF4-206ENST00000478938 SEC61BP60468 96 aaKnown RBP10.02□□□□□ -0.81
SDF4-206ENST00000478938 R4GN34 69 aa9.95□□□□□ -0.82
SDF4-206ENST00000478938 EPPK1P58107 5090 aaKnown RBP9.89□□□□□ -0.83
SDF4-206ENST00000478938 LPAP08519 4548 aa9.89□□□□□ -0.83
SDF4-206ENST00000478938 PP632Q6XCG6 107 aa9.81□□□□□ -0.84
SDF4-206ENST00000478938 LORP23490 312 aaPredicted RBP9.76□□□□□ -0.85
SDF4-206ENST00000478938 BIRC6Q9NR09 4857 aa9.72□□□□□ -0.85
SDF4-206ENST00000478938 RYR1P21817 5038 aa9.71□□□□□ -0.85
SDF4-206ENST00000478938 KIAA1109Q2LD37 5005 aa9.7□□□□□ -0.86
SDF4-206ENST00000478938 KRTAP17-1Q9BYP8 105 aa9.65□□□□□ -0.86
SDF4-206ENST00000478938 Q5VSD8 79 aa9.64□□□□□ -0.87
SDF4-206ENST00000478938 CAMK2N1Q7Z7J9 78 aa9.59□□□□□ -0.87
SDF4-206ENST00000478938 SPRR5A0A1B0GTR4 108 aa9.59□□□□□ -0.87
SDF4-206ENST00000478938 LRP2P98164 4655 aa9.58□□□□□ -0.88
SDF4-206ENST00000478938 PRO2289Q9P1D8 64 aa9.52□□□□□ -0.89
SDF4-206ENST00000478938 HERC2O95714 4834 aa9.51□□□□□ -0.89
SDF4-206ENST00000478938 KRTAP4-5Q9BYR2 181 aa9.4□□□□□ -0.9
SDF4-206ENST00000478938 ABCA13Q86UQ4 5058 aa9.3□□□□□ -0.92
SDF4-206ENST00000478938 MT1HL1P0DM35 61 aa9.3□□□□□ -0.92
SDF4-206ENST00000478938 TNP1P09430 55 aa9.27□□□□□ -0.93
SDF4-206ENST00000478938 J3QL48 77 aa9.17□□□□□ -0.94
SDF4-206ENST00000478938 KRTAP23-1A1A580 65 aa9.16□□□□□ -0.94
SDF4-206ENST00000478938 INE1O15225 51 aa9.15□□□□□ -0.95
SDF4-206ENST00000478938 PCLOQ9Y6V0 5065 aa9.14□□□□□ -0.95
SDF4-206ENST00000478938 MUC17Q685J3 4493 aa9.04□□□□□ -0.96
SDF4-206ENST00000478938 KRTAP4-1Q9BYQ7 146 aa8.91□□□□□ -0.98
SDF4-206ENST00000478938 HERC1Q15751 4861 aa8.87□□□□□ -0.99
SDF4-206ENST00000478938 KRTAP19-2Q3LHN2 52 aa8.77□□□□□ -1
SDF4-206ENST00000478938 LCE3AQ5TA76 89 aa8.77□□□□□ -1
SDF4-206ENST00000478938 MUC2Q02817 5179 aa8.74□□□□□ -1.01
SDF4-206ENST00000478938 HMCN2Q8NDA2 5059 aa8.67□□□□□ -1.02
SDF4-206ENST00000478938 FLGP20930 4061 aaPredicted RBP8.66□□□□□ -1.02
SDF4-206ENST00000478938 KRTAP8-1Q8IUC2 63 aa8.41□□□□□ -1.06
SDF4-206ENST00000478938 UBR4Q5T4S7 5183 aa8.39□□□□□ -1.07
SDF4-206ENST00000478938 RNF213Q63HN8 5207 aa8.38□□□□□ -1.07
SDF4-206ENST00000478938 KRTAP10-12P60413 245 aa8.33□□□□□ -1.08
SDF4-206ENST00000478938 FAT4Q6V0I7 4981 aa8.3□□□□□ -1.08
SDF4-206ENST00000478938 KRTAP19-1Q8IUB9 90 aa8.29□□□□□ -1.08
SDF4-206ENST00000478938 SPRR2GQ9BYE4 73 aa8.29□□□□□ -1.08
SDF4-206ENST00000478938 KRTAP12-3P60328 96 aa8.25□□□□□ -1.09
SDF4-206ENST00000478938 KRTAP10-10P60014 251 aa8.2□□□□□ -1.1
SDF4-206ENST00000478938 LCE2CQ5TA81 110 aa8□□□□□ -1.13
SDF4-206ENST00000478938 KRTAP10-5P60370 271 aa8□□□□□ -1.13
SDF4-206ENST00000478938 MT1XP80297 61 aa7.91□□□□□ -1.14
SDF4-206ENST00000478938 M0R2T5 61 aa7.85□□□□□ -1.15
SDF4-206ENST00000478938 KRTAP10-7P60409 375 aaPredicted RBP7.84□□□□□ -1.15
SDF4-206ENST00000478938 MT1FP04733 61 aa7.81□□□□□ -1.16
SDF4-206ENST00000478938 LCE3CQ5T5A8 94 aa7.81□□□□□ -1.16
SDF4-206ENST00000478938 MT1HP80294 61 aa7.79□□□□□ -1.16
SDF4-206ENST00000478938 KRTAP9-6A8MVA2 160 aa7.74□□□□□ -1.17
SDF4-206ENST00000478938 KRTAP19-8Q3LI54 63 aa7.73□□□□□ -1.17
SDF4-206ENST00000478938 MT2AP02795 61 aa7.72□□□□□ -1.17
SDF4-206ENST00000478938 MT1BP07438 61 aa7.72□□□□□ -1.17
SDF4-206ENST00000478938 LCE2AQ5TA79 106 aaPredicted RBP7.7□□□□□ -1.18
SDF4-206ENST00000478938 KRTAP2-3P0C7H8 128 aa7.66□□□□□ -1.18
SDF4-206ENST00000478938 KRTAP2-4Q9BYR9 128 aa7.66□□□□□ -1.18
SDF4-206ENST00000478938 KRTAP2-1Q9BYU5 128 aa7.66□□□□□ -1.18
SDF4-206ENST00000478938 KRTAP19-5Q3LI72 72 aa7.65□□□□□ -1.19
SDF4-206ENST00000478938 KRTAP9-8Q9BYQ0 159 aa7.64□□□□□ -1.19
SDF4-206ENST00000478938 KMT2DO14686 5537 aa7.4□□□□□ -1.22
SDF4-206ENST00000478938 KRTAP4-7Q9BYR0 210 aa7.37□□□□□ -1.23
SDF4-206ENST00000478938 USH2AO75445 5202 aa7.3□□□□□ -1.24
SDF4-206ENST00000478938 KRTAP9-3Q9BYQ3 159 aa7.29□□□□□ -1.24
SDF4-206ENST00000478938 KRTAP4-8A0A0G2JLE6 195 aa7.19□□□□□ -1.26
SDF4-206ENST00000478938 KRTAP4-8Q9BYQ9 185 aa7.19□□□□□ -1.26
SDF4-206ENST00000478938 FSIP2Q5CZC0 6907 aa7.19□□□□□ -1.26
SDF4-206ENST00000478938 LCE2DQ5TA82 110 aaPredicted RBP7.17□□□□□ -1.26
SDF4-206ENST00000478938 KRTAP12-4P60329 112 aa7.08□□□□□ -1.28
SDF4-206ENST00000478938 LCE2BO14633 110 aa7.05□□□□□ -1.28
SDF4-206ENST00000478938 KRTAP9-2Q9BYQ4 174 aa7.05□□□□□ -1.28
SDF4-206ENST00000478938 KRTAP19-7Q3SYF9 63 aa7.03□□□□□ -1.28
SDF4-206ENST00000478938 MT1LQ93083 61 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms