RNA–Protein interactions for RNA: ENST00000478503.6

SH3D19-207, Transcript of SH3 domain containing 19, humanhuman

TSL 2

Gene SH3D19, Length 4,038 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D19-207ENST00000478503 Q6ZSA8 131 aa3.41□□□□□ -1.86
SH3D19-207ENST00000478503 C9orf92A6NGG3 77 aa3.4□□□□□ -1.87
SH3D19-207ENST00000478503 MYCBP2O75592 4640 aa3.37□□□□□ -1.87
SH3D19-207ENST00000478503 SPINK1P00995 79 aa3.37□□□□□ -1.87
SH3D19-207ENST00000478503 LRP1Q07954 4544 aaKnown RBP3.37□□□□□ -1.87
SH3D19-207ENST00000478503 KRTAP13-3Q3SY46 172 aa3.36□□□□□ -1.87
SH3D19-207ENST00000478503 APOBP04114 4563 aaKnown RBP3.36□□□□□ -1.87
SH3D19-207ENST00000478503 LCE2CQ5TA81 110 aa3.35□□□□□ -1.87
SH3D19-207ENST00000478503 KRTAP15-1Q3LI76 137 aa3.33□□□□□ -1.88
SH3D19-207ENST00000478503 RYR2Q92736 4967 aa3.32□□□□□ -1.88
SH3D19-207ENST00000478503 KIAA1109Q2LD37 5005 aa3.3□□□□□ -1.88
SH3D19-207ENST00000478503 RYR3Q15413 4870 aa3.29□□□□□ -1.88
SH3D19-207ENST00000478503 PRO2289Q9P1D8 64 aa3.28□□□□□ -1.88
SH3D19-207ENST00000478503 FAT3Q8TDW7 4589 aa3.28□□□□□ -1.88
SH3D19-207ENST00000478503 A0A1B0GVY2 172 aa3.27□□□□□ -1.89
SH3D19-207ENST00000478503 KRTAP10-4P60372 401 aaPredicted RBP3.25□□□□□ -1.89
SH3D19-207ENST00000478503 LCE2AQ5TA79 106 aaPredicted RBP3.25□□□□□ -1.89
SH3D19-207ENST00000478503 TPRXLQ17RH7 258 aa3.24□□□□□ -1.89
SH3D19-207ENST00000478503 PKHD1L1Q86WI1 4243 aa3.24□□□□□ -1.89
SH3D19-207ENST00000478503 LCE2BO14633 110 aa3.23□□□□□ -1.89
SH3D19-207ENST00000478503 HSPG2P98160 4391 aa3.23□□□□□ -1.89
SH3D19-207ENST00000478503 KRTAP17-1Q9BYP8 105 aa3.22□□□□□ -1.89
SH3D19-207ENST00000478503 Q5VSD8 79 aa3.22□□□□□ -1.89
SH3D19-207ENST00000478503 KRTAP3-1Q9BYR8 98 aa3.22□□□□□ -1.89
SH3D19-207ENST00000478503 RYR1P21817 5038 aa3.21□□□□□ -1.9
SH3D19-207ENST00000478503 EPPK1P58107 5090 aaKnown RBP3.2□□□□□ -1.9
SH3D19-207ENST00000478503 LPAP08519 4548 aa3.17□□□□□ -1.9
SH3D19-207ENST00000478503 PLAC4Q8WY50 150 aa3.17□□□□□ -1.9
SH3D19-207ENST00000478503 BIRC6Q9NR09 4857 aa3.17□□□□□ -1.9
SH3D19-207ENST00000478503 LRP2P98164 4655 aa3.17□□□□□ -1.9
SH3D19-207ENST00000478503 RPS29P62273 56 aaKnown RBP3.16□□□□□ -1.9
SH3D19-207ENST00000478503 TNXBP22105 4242 aa3.16□□□□□ -1.9
SH3D19-207ENST00000478503 C10orf95Q9H7T3 257 aa3.15□□□□□ -1.9
SH3D19-207ENST00000478503 ABCA13Q86UQ4 5058 aa3.14□□□□□ -1.91
SH3D19-207ENST00000478503 KRTAP10-8P60410 259 aa3.14□□□□□ -1.91
SH3D19-207ENST00000478503 XP32Q5T750 250 aa3.11□□□□□ -1.91
SH3D19-207ENST00000478503 H0YAA0 97 aa3.1□□□□□ -1.91
SH3D19-207ENST00000478503 COX6B2Q6YFQ2 88 aa3.1□□□□□ -1.91
SH3D19-207ENST00000478503 KRTAP4-5Q9BYR2 181 aa3.1□□□□□ -1.91
SH3D19-207ENST00000478503 A0A0D9SG42 100 aa3.09□□□□□ -1.91
SH3D19-207ENST00000478503 HERC2O95714 4834 aa3.09□□□□□ -1.92
SH3D19-207ENST00000478503 MT1HL1P0DM35 61 aa3.08□□□□□ -1.92
SH3D19-207ENST00000478503 RPL37P61927 97 aaKnown RBP3.07□□□□□ -1.92
SH3D19-207ENST00000478503 MUC2Q02817 5179 aa3.06□□□□□ -1.92
SH3D19-207ENST00000478503 H1FX-AS1Q4G0G2 97 aa3.06□□□□□ -1.92
SH3D19-207ENST00000478503 S4R3F8 94 aa3.03□□□□□ -1.92
SH3D19-207ENST00000478503 KRTAP13-4Q3LI77 160 aa3.02□□□□□ -1.93
SH3D19-207ENST00000478503 LORP23490 312 aaPredicted RBP3.02□□□□□ -1.93
SH3D19-207ENST00000478503 PP632Q6XCG6 107 aa3.02□□□□□ -1.93
SH3D19-207ENST00000478503 INE1O15225 51 aa3.01□□□□□ -1.93
SH3D19-207ENST00000478503 KRTAP10-6P60371 365 aaPredicted RBP3□□□□□ -1.93
SH3D19-207ENST00000478503 HERC1Q15751 4861 aa2.97□□□□□ -1.93
SH3D19-207ENST00000478503 PCLOQ9Y6V0 5065 aa2.94□□□□□ -1.94
SH3D19-207ENST00000478503 KRTAP12-2P59991 146 aa2.92□□□□□ -1.94
SH3D19-207ENST00000478503 KRTAP4-1Q9BYQ7 146 aa2.91□□□□□ -1.94
SH3D19-207ENST00000478503 FAT4Q6V0I7 4981 aa2.91□□□□□ -1.94
SH3D19-207ENST00000478503 RNF213Q63HN8 5207 aa2.9□□□□□ -1.95
SH3D19-207ENST00000478503 M0QZ58 72 aa2.88□□□□□ -1.95
SH3D19-207ENST00000478503 KRTAP12-1P59990 96 aa2.85□□□□□ -1.95
SH3D19-207ENST00000478503 MUC17Q685J3 4493 aa2.85□□□□□ -1.95
SH3D19-207ENST00000478503 UBR4Q5T4S7 5183 aa2.82□□□□□ -1.96
SH3D19-207ENST00000478503 HMCN2Q8NDA2 5059 aa2.78□□□□□ -1.96
SH3D19-207ENST00000478503 KRTAP19-2Q3LHN2 52 aa2.75□□□□□ -1.97
SH3D19-207ENST00000478503 FLGP20930 4061 aaPredicted RBP2.72□□□□□ -1.97
SH3D19-207ENST00000478503 M0R2T5 61 aa2.72□□□□□ -1.97
SH3D19-207ENST00000478503 KRTAP10-10P60014 251 aa2.6□□□□□ -1.99
SH3D19-207ENST00000478503 MT1HP80294 61 aa2.58□□□□□ -2
SH3D19-207ENST00000478503 USH2AO75445 5202 aa2.58□□□□□ -2
SH3D19-207ENST00000478503 MT1FP04733 61 aa2.56□□□□□ -2
SH3D19-207ENST00000478503 KRTAP19-1Q8IUB9 90 aa2.56□□□□□ -2
SH3D19-207ENST00000478503 TNP1P09430 55 aa2.55□□□□□ -2
SH3D19-207ENST00000478503 MT2AP02795 61 aa2.54□□□□□ -2
SH3D19-207ENST00000478503 FSIP2Q5CZC0 6907 aa2.51□□□□□ -2.01
SH3D19-207ENST00000478503 KRTAP9-8Q9BYQ0 159 aa2.51□□□□□ -2.01
SH3D19-207ENST00000478503 SPRR2GQ9BYE4 73 aa2.5□□□□□ -2.01
SH3D19-207ENST00000478503 KRTAP19-4Q3LI73 84 aa2.49□□□□□ -2.01
SH3D19-207ENST00000478503 KMT2DO14686 5537 aa2.49□□□□□ -2.01
SH3D19-207ENST00000478503 LCE5AQ5TCM9 118 aa2.47□□□□□ -2.01
SH3D19-207ENST00000478503 LCE3AQ5TA76 89 aa2.47□□□□□ -2.01
SH3D19-207ENST00000478503 LCE3CQ5T5A8 94 aa2.43□□□□□ -2.02
SH3D19-207ENST00000478503 MT1BP07438 61 aa2.43□□□□□ -2.02
SH3D19-207ENST00000478503 KRTAP9-6A0A140TA67 174 aa2.41□□□□□ -2.02
SH3D19-207ENST00000478503 MT1XP80297 61 aa2.4□□□□□ -2.02
SH3D19-207ENST00000478503 KRTAP10-5P60370 271 aa2.4□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP10-7P60409 375 aaPredicted RBP2.39□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP9-4Q9BYQ2 154 aa2.39□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP9-3Q9BYQ3 159 aa2.39□□□□□ -2.03
SH3D19-207ENST00000478503 LCE1FQ5T754 118 aa2.39□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP19-8Q3LI54 63 aa2.38□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP9-2Q9BYQ4 174 aa2.36□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP10-12P60413 245 aa2.35□□□□□ -2.03
SH3D19-207ENST00000478503 KRTAP2-2Q9BYT5 123 aa2.33□□□□□ -2.04
SH3D19-207ENST00000478503 LOC100996750A0A140TA64 210 aa2.33□□□□□ -2.04
SH3D19-207ENST00000478503 KRTAP4-6Q9BYQ5 205 aa2.33□□□□□ -2.04
SH3D19-207ENST00000478503 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
SH3D19-207ENST00000478503 KRTAP4-8A0A0G2JLE6 195 aa2.32□□□□□ -2.04
SH3D19-207ENST00000478503 LCE1EQ5T753 118 aa2.32□□□□□ -2.04
SH3D19-207ENST00000478503 KRTAP4-8Q9BYQ9 185 aa2.32□□□□□ -2.04
SH3D19-207ENST00000478503 SPRR5A0A1B0GTR4 108 aa2.31□□□□□ -2.04
SH3D19-207ENST00000478503 LCE4AQ5TA78 99 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms