RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 SACSQ9NZJ4 4579 aa5.15□□□□□ -1.58
CMC1-209ENST00000477739 KRTAP10-4P60372 401 aaPredicted RBP5.12□□□□□ -1.59
CMC1-209ENST00000477739 KRTAP25-1Q3LHN0 102 aa5.1□□□□□ -1.59
CMC1-209ENST00000477739 KRTAP10-8P60410 259 aa5.1□□□□□ -1.59
CMC1-209ENST00000477739 P0C880 135 aa5.09□□□□□ -1.59
CMC1-209ENST00000477739 S4R3F8 94 aa5.09□□□□□ -1.59
CMC1-209ENST00000477739 RPL37P61927 97 aaKnown RBP5.07□□□□□ -1.6
CMC1-209ENST00000477739 KMT2CQ8NEZ4 4911 aaKnown RBP5.06□□□□□ -1.6
CMC1-209ENST00000477739 J3QL48 77 aa5.06□□□□□ -1.6
CMC1-209ENST00000477739 KRTAP13-4Q3LI77 160 aa5.05□□□□□ -1.6
CMC1-209ENST00000477739 APOBP04114 4563 aaKnown RBP5.04□□□□□ -1.6
CMC1-209ENST00000477739 KIAA1109Q2LD37 5005 aa5.03□□□□□ -1.6
CMC1-209ENST00000477739 ROMO1P60602 79 aa5.03□□□□□ -1.6
CMC1-209ENST00000477739 XP32Q5T750 250 aa4.99□□□□□ -1.61
CMC1-209ENST00000477739 RYR2Q92736 4967 aa4.97□□□□□ -1.61
CMC1-209ENST00000477739 RYR1P21817 5038 aa4.96□□□□□ -1.61
CMC1-209ENST00000477739 M0QZ58 72 aa4.95□□□□□ -1.62
CMC1-209ENST00000477739 NDUFAF8A1L188 74 aa4.94□□□□□ -1.62
CMC1-209ENST00000477739 HSPG2P98160 4391 aa4.94□□□□□ -1.62
CMC1-209ENST00000477739 LRP2P98164 4655 aa4.94□□□□□ -1.62
CMC1-209ENST00000477739 KRTAP12-2P59991 146 aa4.93□□□□□ -1.62
CMC1-209ENST00000477739 RYR3Q15413 4870 aa4.92□□□□□ -1.62
CMC1-209ENST00000477739 KRTAP10-6P60371 365 aaPredicted RBP4.92□□□□□ -1.62
CMC1-209ENST00000477739 TPRXLQ17RH7 258 aa4.92□□□□□ -1.62
CMC1-209ENST00000477739 R4GN34 69 aa4.91□□□□□ -1.62
CMC1-209ENST00000477739 LPAP08519 4548 aa4.91□□□□□ -1.62
CMC1-209ENST00000477739 KRTAP3-3Q9BYR6 98 aa4.89□□□□□ -1.63
CMC1-209ENST00000477739 KRTAP4-5Q9BYR2 181 aa4.87□□□□□ -1.63
CMC1-209ENST00000477739 MT1HL1P0DM35 61 aa4.86□□□□□ -1.63
CMC1-209ENST00000477739 KRTAP17-1Q9BYP8 105 aa4.86□□□□□ -1.63
CMC1-209ENST00000477739 PKHD1L1Q86WI1 4243 aa4.85□□□□□ -1.63
CMC1-209ENST00000477739 KRTAP3-2Q9BYR7 98 aa4.83□□□□□ -1.64
CMC1-209ENST00000477739 CAMK2N1Q7Z7J9 78 aa4.82□□□□□ -1.64
CMC1-209ENST00000477739 EPPK1P58107 5090 aaKnown RBP4.81□□□□□ -1.64
CMC1-209ENST00000477739 MUC2Q02817 5179 aa4.8□□□□□ -1.64
CMC1-209ENST00000477739 TNXBP22105 4242 aa4.78□□□□□ -1.64
CMC1-209ENST00000477739 KRTAP12-1P59990 96 aa4.77□□□□□ -1.65
CMC1-209ENST00000477739 SEC61BP60468 96 aaKnown RBP4.73□□□□□ -1.65
CMC1-209ENST00000477739 ABCA13Q86UQ4 5058 aa4.72□□□□□ -1.65
CMC1-209ENST00000477739 LORP23490 312 aaPredicted RBP4.7□□□□□ -1.66
CMC1-209ENST00000477739 M0R2T5 61 aa4.67□□□□□ -1.66
CMC1-209ENST00000477739 HERC2O95714 4834 aa4.59□□□□□ -1.67
CMC1-209ENST00000477739 KRTAP15-1Q3LI76 137 aa4.59□□□□□ -1.67
CMC1-209ENST00000477739 LCE2DQ5TA82 110 aaPredicted RBP4.56□□□□□ -1.68
CMC1-209ENST00000477739 LUZP6Q538Z0 58 aa4.56□□□□□ -1.68
CMC1-209ENST00000477739 PLAC4Q8WY50 150 aa4.56□□□□□ -1.68
CMC1-209ENST00000477739 FAT4Q6V0I7 4981 aa4.55□□□□□ -1.68
CMC1-209ENST00000477739 KRTAP4-1Q9BYQ7 146 aa4.55□□□□□ -1.68
CMC1-209ENST00000477739 RNF213Q63HN8 5207 aa4.51□□□□□ -1.69
CMC1-209ENST00000477739 HERC1Q15751 4861 aa4.46□□□□□ -1.7
CMC1-209ENST00000477739 A0A0A0MQY5 61 aa4.38□□□□□ -1.71
CMC1-209ENST00000477739 TNP1P09430 55 aa4.37□□□□□ -1.71
CMC1-209ENST00000477739 PCLOQ9Y6V0 5065 aa4.33□□□□□ -1.72
CMC1-209ENST00000477739 MUC17Q685J3 4493 aa4.31□□□□□ -1.72
CMC1-209ENST00000477739 KRTAP10-10P60014 251 aa4.3□□□□□ -1.72
CMC1-209ENST00000477739 BIRC6Q9NR09 4857 aa4.3□□□□□ -1.72
CMC1-209ENST00000477739 UBR4Q5T4S7 5183 aa4.29□□□□□ -1.72
CMC1-209ENST00000477739 HMCN2Q8NDA2 5059 aa4.29□□□□□ -1.72
CMC1-209ENST00000477739 KRTAP19-2Q3LHN2 52 aa4.28□□□□□ -1.73
CMC1-209ENST00000477739 PP632Q6XCG6 107 aa4.2□□□□□ -1.74
CMC1-209ENST00000477739 FSIP2Q5CZC0 6907 aa4.18□□□□□ -1.74
CMC1-209ENST00000477739 FLGP20930 4061 aaPredicted RBP4.17□□□□□ -1.74
CMC1-209ENST00000477739 USH2AO75445 5202 aa4.13□□□□□ -1.75
CMC1-209ENST00000477739 LCE3AQ5TA76 89 aa4.13□□□□□ -1.75
CMC1-209ENST00000477739 LCE2CQ5TA81 110 aa4.11□□□□□ -1.75
CMC1-209ENST00000477739 MT1HP80294 61 aa4.09□□□□□ -1.75
CMC1-209ENST00000477739 KMT2DO14686 5537 aa4.06□□□□□ -1.76
CMC1-209ENST00000477739 KRTAP19-1Q8IUB9 90 aa4.04□□□□□ -1.76
CMC1-209ENST00000477739 SPRR2GQ9BYE4 73 aa4.04□□□□□ -1.76
CMC1-209ENST00000477739 MT1FP04733 61 aa4.03□□□□□ -1.76
CMC1-209ENST00000477739 MT2AP02795 61 aa4.02□□□□□ -1.77
CMC1-209ENST00000477739 SPRR5A0A1B0GTR4 108 aa3.96□□□□□ -1.78
CMC1-209ENST00000477739 KRTAP9-8Q9BYQ0 159 aa3.94□□□□□ -1.78
CMC1-209ENST00000477739 OBSCNQ5VST9 7968 aa3.93□□□□□ -1.78
CMC1-209ENST00000477739 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
CMC1-209ENST00000477739 KRTAP10-12P60413 245 aa3.91□□□□□ -1.78
CMC1-209ENST00000477739 KRTAP12-3P60328 96 aa3.89□□□□□ -1.79
CMC1-209ENST00000477739 LCE2BO14633 110 aa3.86□□□□□ -1.79
CMC1-209ENST00000477739 KRTAP10-7P60409 375 aaPredicted RBP3.86□□□□□ -1.79
CMC1-209ENST00000477739 KRTAP19-8Q3LI54 63 aa3.84□□□□□ -1.8
CMC1-209ENST00000477739 MT1BP07438 61 aa3.83□□□□□ -1.8
CMC1-209ENST00000477739 PRO2289Q9P1D8 64 aa3.83□□□□□ -1.8
CMC1-209ENST00000477739 DSTQ03001 7570 aaKnown RBP3.82□□□□□ -1.8
CMC1-209ENST00000477739 MT1XP80297 61 aa3.8□□□□□ -1.8
CMC1-209ENST00000477739 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
CMC1-209ENST00000477739 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
CMC1-209ENST00000477739 CRCT1Q9UGL9 99 aa3.77□□□□□ -1.81
CMC1-209ENST00000477739 KRTAP4-8A0A0G2JLE6 195 aa3.77□□□□□ -1.81
CMC1-209ENST00000477739 KRTAP4-8Q9BYQ9 185 aa3.77□□□□□ -1.81
CMC1-209ENST00000477739 SYNE1Q8NF91 8797 aaKnown RBP3.77□□□□□ -1.81
CMC1-209ENST00000477739 KRTAP8-1Q8IUC2 63 aa3.74□□□□□ -1.81
CMC1-209ENST00000477739 FCGBPQ9Y6R7 5405 aaPredicted RBP3.73□□□□□ -1.81
CMC1-209ENST00000477739 KRTAP19-5Q3LI72 72 aa3.72□□□□□ -1.81
CMC1-209ENST00000477739 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.82
CMC1-209ENST00000477739 INE1O15225 51 aa3.57□□□□□ -1.84
CMC1-209ENST00000477739 MUC12Q9UKN1 5478 aa3.57□□□□□ -1.84
CMC1-209ENST00000477739 LCE2AQ5TA79 106 aaPredicted RBP3.56□□□□□ -1.84
CMC1-209ENST00000477739 LCE3CQ5T5A8 94 aa3.54□□□□□ -1.84
CMC1-209ENST00000477739 SYNE2Q8WXH0 6885 aaKnown RBP3.47□□□□□ -1.85
CMC1-209ENST00000477739 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms