RNA–Protein interactions for RNA: ENST00000476590.1

CD55-208, Transcript of CD55 molecule (Cromer blood group), humanhuman

TSL 1 (best)

Gene CD55, Length 2,163 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD55-208ENST00000476590 MEGF8Q7Z7M0 2845 aa2.06□□□□□ -2.08
CD55-208ENST00000476590 OTOGLQ3ZCN5 2332 aa2.06□□□□□ -2.08
CD55-208ENST00000476590 LRRK2Q5S007 2527 aa2.06□□□□□ -2.08
CD55-208ENST00000476590 KRTAP12-1P59990 96 aa2.06□□□□□ -2.08
CD55-208ENST00000476590 HERC1Q15751 4861 aa2.06□□□□□ -2.08
CD55-208ENST00000476590 MUC3AQ02505 3323 aa2.05□□□□□ -2.08
CD55-208ENST00000476590 MTORP42345 2549 aa2.04□□□□□ -2.08
CD55-208ENST00000476590 RYR2Q92736 4967 aa2.04□□□□□ -2.08
CD55-208ENST00000476590 KRTAP10-8P60410 259 aa2.03□□□□□ -2.08
CD55-208ENST00000476590 MYO9AB2RTY4 2548 aa2.03□□□□□ -2.08
CD55-208ENST00000476590 VPS13CQ709C8 3753 aa2.03□□□□□ -2.08
CD55-208ENST00000476590 CSMD2Q7Z408 3487 aa2.03□□□□□ -2.08
CD55-208ENST00000476590 CSMD3Q7Z407 3707 aa2.03□□□□□ -2.08
CD55-208ENST00000476590 TENM1Q9UKZ4 2725 aa2.02□□□□□ -2.09
CD55-208ENST00000476590 PP632Q6XCG6 107 aa2.01□□□□□ -2.09
CD55-208ENST00000476590 NIPBLQ6KC79 2804 aaeCLIP2.01□□□□□ -2.09
CD55-208ENST00000476590 CEP295Q9C0D2 2601 aa2.01□□□□□ -2.09
CD55-208ENST00000476590 BSNQ9UPA5 3926 aa2.01□□□□□ -2.09
CD55-208ENST00000476590 CENPEQ02224 2701 aa1.99□□□□□ -2.09
CD55-208ENST00000476590 SPRR5A0A1B0GTR4 108 aa1.99□□□□□ -2.09
CD55-208ENST00000476590 MXRA5Q9NR99 2828 aa1.99□□□□□ -2.09
CD55-208ENST00000476590 MACF1Q9UPN3 7388 aaKnown RBP1.99□□□□□ -2.09
CD55-208ENST00000476590 KRTAP10-3P60369 221 aa1.99□□□□□ -2.09
CD55-208ENST00000476590 CUBNO60494 3623 aa1.98□□□□□ -2.09
CD55-208ENST00000476590 EPPK1P58107 5090 aaKnown RBP1.98□□□□□ -2.09
CD55-208ENST00000476590 LCE3AQ5TA76 89 aa1.98□□□□□ -2.09
CD55-208ENST00000476590 DNAH1Q9P2D7 4330 aa1.98□□□□□ -2.09
CD55-208ENST00000476590 FBN2P35556 2912 aa1.98□□□□□ -2.09
CD55-208ENST00000476590 SYNE2Q8WXH0 6885 aaKnown RBP1.98□□□□□ -2.09
CD55-208ENST00000476590 CFAP46Q8IYW2 2715 aa1.97□□□□□ -2.09
CD55-208ENST00000476590 M0QZ58 72 aa1.97□□□□□ -2.09
CD55-208ENST00000476590 NBEAL1Q6ZS30 2694 aa1.97□□□□□ -2.09
CD55-208ENST00000476590 DMBT1Q9UGM3 2413 aaPredicted RBP1.97□□□□□ -2.09
CD55-208ENST00000476590 VPS13DQ5THJ4 4388 aa1.96□□□□□ -2.09
CD55-208ENST00000476590 PDZD2O15018 2839 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 ABCA13Q86UQ4 5058 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 TRRAPQ9Y4A5 3859 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 TGP01266 2768 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 KRTAP13-2Q52LG2 175 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 AHNAK2Q8IVF2 5795 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 ATRQ13535 2644 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 FRAS1Q86XX4 4008 aa1.96□□□□□ -2.1
CD55-208ENST00000476590 HIVEP1P15822 2718 aa1.95□□□□□ -2.1
CD55-208ENST00000476590 KMT2CQ8NEZ4 4911 aaKnown RBP1.95□□□□□ -2.1
CD55-208ENST00000476590 SSPOA2VEC9 5147 aa1.95□□□□□ -2.1
CD55-208ENST00000476590 ANK3Q12955 4377 aaKnown RBP1.94□□□□□ -2.1
CD55-208ENST00000476590 KRTAP20-1Q3LI63 56 aa1.93□□□□□ -2.1
CD55-208ENST00000476590 COL7A1Q02388 2944 aa1.93□□□□□ -2.1
CD55-208ENST00000476590 DNHD1Q96M86 4753 aa1.93□□□□□ -2.1
CD55-208ENST00000476590 ZANQ9Y493 2812 aa1.93□□□□□ -2.1
CD55-208ENST00000476590 POLQO75417 2590 aa1.92□□□□□ -2.1
CD55-208ENST00000476590 NSD1Q96L73 2696 aaPredicted RBP1.92□□□□□ -2.1
CD55-208ENST00000476590 HYDINQ4G0P3 5121 aa1.9□□□□□ -2.1
CD55-208ENST00000476590 PKD1L1Q8TDX9 2849 aa1.9□□□□□ -2.1
CD55-208ENST00000476590 RPS29P62273 56 aaKnown RBP1.9□□□□□ -2.11
CD55-208ENST00000476590 KRTAP5-5Q701N2 237 aaPredicted RBP1.9□□□□□ -2.11
CD55-208ENST00000476590 USP9YO00507 2555 aaPredicted RBP1.9□□□□□ -2.11
CD55-208ENST00000476590 DNAH8Q96JB1 4490 aa1.89□□□□□ -2.11
CD55-208ENST00000476590 ACANP16112 2415 aa1.89□□□□□ -2.11
CD55-208ENST00000476590 ANK2Q01484 3957 aa1.89□□□□□ -2.11
CD55-208ENST00000476590 DNAH11Q96DT5 4516 aa1.88□□□□□ -2.11
CD55-208ENST00000476590 C9orf92A6NGG3 77 aa1.88□□□□□ -2.11
CD55-208ENST00000476590 Q5VSD8 79 aa1.88□□□□□ -2.11
CD55-208ENST00000476590 FLNAP21333 2647 aaKnown RBP1.87□□□□□ -2.11
CD55-208ENST00000476590 FLNCQ14315 2725 aa1.87□□□□□ -2.11
CD55-208ENST00000476590 STAB2Q8WWQ8 2551 aa1.87□□□□□ -2.11
CD55-208ENST00000476590 DNAH10Q8IVF4 4471 aa1.87□□□□□ -2.11
CD55-208ENST00000476590 LCE1CQ5T751 118 aa1.86□□□□□ -2.11
CD55-208ENST00000476590 LCE1BQ5T7P3 118 aa1.86□□□□□ -2.11
CD55-208ENST00000476590 KRTAP1-4P0C5Y4 121 aa1.86□□□□□ -2.11
CD55-208ENST00000476590 LYSTQ99698 3801 aa1.86□□□□□ -2.11
CD55-208ENST00000476590 ITPR2Q14571 2701 aa1.86□□□□□ -2.11
CD55-208ENST00000476590 DNAH17Q9UFH2 4485 aa1.85□□□□□ -2.11
CD55-208ENST00000476590 MYCBP2O75592 4640 aa1.83□□□□□ -2.12
CD55-208ENST00000476590 TENM3Q9P273 2699 aa1.83□□□□□ -2.12
CD55-208ENST00000476590 FAT4Q6V0I7 4981 aa1.82□□□□□ -2.12
CD55-208ENST00000476590 DNAH9Q9NYC9 4486 aa1.81□□□□□ -2.12
CD55-208ENST00000476590 A0A1B0GVY2 172 aa1.81□□□□□ -2.12
CD55-208ENST00000476590 SMR3AQ99954 134 aa1.81□□□□□ -2.12
CD55-208ENST00000476590 LCE1FQ5T754 118 aa1.8□□□□□ -2.12
CD55-208ENST00000476590 DYNC2H1Q8NCM8 4307 aaKnown RBP1.8□□□□□ -2.12
CD55-208ENST00000476590 FAT3Q8TDW7 4589 aa1.8□□□□□ -2.12
CD55-208ENST00000476590 KMT2AQ03164 3969 aa1.79□□□□□ -2.12
CD55-208ENST00000476590 DNAH3Q8TD57 4116 aa1.79□□□□□ -2.12
CD55-208ENST00000476590 FSIP2Q5CZC0 6907 aa1.79□□□□□ -2.12
CD55-208ENST00000476590 HERC2O95714 4834 aa1.78□□□□□ -2.12
CD55-208ENST00000476590 DNAH6Q9C0G6 4158 aa1.78□□□□□ -2.12
CD55-208ENST00000476590 DNAH7Q8WXX0 4024 aa1.77□□□□□ -2.13
CD55-208ENST00000476590 TNP1P09430 55 aa1.77□□□□□ -2.13
CD55-208ENST00000476590 KRTAP10-1P60331 282 aa1.76□□□□□ -2.13
CD55-208ENST00000476590 KRTAP5-7Q6L8G8 165 aa1.76□□□□□ -2.13
CD55-208ENST00000476590 PRKDCP78527 4128 aaKnown RBP1.76□□□□□ -2.13
CD55-208ENST00000476590 CMYA5Q8N3K9 4069 aa1.76□□□□□ -2.13
CD55-208ENST00000476590 DNAH2Q9P225 4427 aa1.73□□□□□ -2.13
CD55-208ENST00000476590 HECTD4Q9Y4D8 3996 aa1.73□□□□□ -2.13
CD55-208ENST00000476590 HUWE1Q7Z6Z7 4374 aaKnown RBP1.72□□□□□ -2.13
CD55-208ENST00000476590 KRTAP10-10P60014 251 aa1.72□□□□□ -2.13
CD55-208ENST00000476590 MT3P25713 68 aa1.71□□□□□ -2.14
CD55-208ENST00000476590 MGAM2Q2M2H8 2515 aa1.71□□□□□ -2.14
CD55-208ENST00000476590 ZNF469Q96JG9 3925 aaPredicted RBP1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms