RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MACF1Q9UPN3 7388 aaKnown RBP8.1□□□□□ -1.11
UPF3A-203ENST00000474056 ATOX1O00244 68 aa8.08□□□□□ -1.12
UPF3A-203ENST00000474056 SPRR2GQ9BYE4 73 aa8.07□□□□□ -1.12
UPF3A-203ENST00000474056 MT1BP07438 61 aa8.06□□□□□ -1.12
UPF3A-203ENST00000474056 KLKP1Q107X0 134 aa8.06□□□□□ -1.12
UPF3A-203ENST00000474056 KRTAP19-8Q3LI54 63 aa8.02□□□□□ -1.13
UPF3A-203ENST00000474056 Q5VV11 94 aa8.02□□□□□ -1.13
UPF3A-203ENST00000474056 LINC00208Q96KT6 92 aa7.98□□□□□ -1.13
UPF3A-203ENST00000474056 SYNE2Q8WXH0 6885 aaKnown RBP7.98□□□□□ -1.13
UPF3A-203ENST00000474056 OCR1Q9BZK8 76 aa7.97□□□□□ -1.13
UPF3A-203ENST00000474056 NDUFC1O43677 76 aa7.94□□□□□ -1.14
UPF3A-203ENST00000474056 A6NN06 94 aa7.93□□□□□ -1.14
UPF3A-203ENST00000474056 IMUPQ9GZP8 106 aa7.93□□□□□ -1.14
UPF3A-203ENST00000474056 A8MUN3 132 aa7.92□□□□□ -1.14
UPF3A-203ENST00000474056 MP68P56378 58 aa7.92□□□□□ -1.14
UPF3A-203ENST00000474056 CRIPTQ9P021 101 aa7.9□□□□□ -1.14
UPF3A-203ENST00000474056 KRTAP6-3Q3LI67 103 aa7.89□□□□□ -1.15
UPF3A-203ENST00000474056 H0YAA0 97 aa7.88□□□□□ -1.15
UPF3A-203ENST00000474056 J3QR89 54 aa7.88□□□□□ -1.15
UPF3A-203ENST00000474056 KRTAP10-5P60370 271 aa7.85□□□□□ -1.15
UPF3A-203ENST00000474056 H3BPC8 53 aa7.81□□□□□ -1.16
UPF3A-203ENST00000474056 ADM2Q7Z4H4 148 aa7.81□□□□□ -1.16
UPF3A-203ENST00000474056 KRTAP4-8Q9BYQ9 185 aa7.79□□□□□ -1.16
UPF3A-203ENST00000474056 SCGB1A1P11684 91 aa7.77□□□□□ -1.17
UPF3A-203ENST00000474056 DMAC1Q96GE9 116 aa7.73□□□□□ -1.17
UPF3A-203ENST00000474056 MUC12Q9UKN1 5478 aa7.68□□□□□ -1.18
UPF3A-203ENST00000474056 MT-ATP8P03928 68 aa7.67□□□□□ -1.18
UPF3A-203ENST00000474056 P0C880 135 aa7.66□□□□□ -1.18
UPF3A-203ENST00000474056 R4GN34 69 aa7.61□□□□□ -1.19
UPF3A-203ENST00000474056 K7ERU9 68 aa7.59□□□□□ -1.19
UPF3A-203ENST00000474056 C20orf197Q8N268 126 aa7.58□□□□□ -1.2
UPF3A-203ENST00000474056 TRAV7A0A075B6U4 112 aa7.57□□□□□ -1.2
UPF3A-203ENST00000474056 M0QZ58 72 aa7.56□□□□□ -1.2
UPF3A-203ENST00000474056 MT1XP80297 61 aa7.55□□□□□ -1.2
UPF3A-203ENST00000474056 SMIM20Q8N5G0 67 aa7.55□□□□□ -1.2
UPF3A-203ENST00000474056 KRTAP5-9P26371 169 aa7.54□□□□□ -1.2
UPF3A-203ENST00000474056 PLAC4Q8WY50 150 aa7.54□□□□□ -1.2
UPF3A-203ENST00000474056 ACYP2P14621 99 aa7.53□□□□□ -1.2
UPF3A-203ENST00000474056 KMT2DO14686 5537 aa7.52□□□□□ -1.21
UPF3A-203ENST00000474056 PRO2289Q9P1D8 64 aa7.51□□□□□ -1.21
UPF3A-203ENST00000474056 KRTAP4-12Q9BQ66 201 aa7.49□□□□□ -1.21
UPF3A-203ENST00000474056 H3BS24 57 aa7.48□□□□□ -1.21
UPF3A-203ENST00000474056 NEBP20929 6669 aa7.47□□□□□ -1.21
UPF3A-203ENST00000474056 LINC01554Q52M75 96 aa7.45□□□□□ -1.22
UPF3A-203ENST00000474056 SNURFQ9Y675 71 aa7.45□□□□□ -1.22
UPF3A-203ENST00000474056 SPTSSBQ8NFR3 76 aa7.41□□□□□ -1.22
UPF3A-203ENST00000474056 MDN1Q9NU22 5596 aa7.41□□□□□ -1.22
UPF3A-203ENST00000474056 CHKB-CPT1BH3BT56 60 aa7.39□□□□□ -1.23
UPF3A-203ENST00000474056 LCE3BQ5TA77 95 aa7.36□□□□□ -1.23
UPF3A-203ENST00000474056 KRTAP12-2P59991 146 aa7.34□□□□□ -1.23
UPF3A-203ENST00000474056 SPRR2FQ96RM1 72 aa7.33□□□□□ -1.24
UPF3A-203ENST00000474056 SPANXA2-OT1Q8N9U9 137 aa7.32□□□□□ -1.24
UPF3A-203ENST00000474056 SERP2Q8N6R1 65 aa7.31□□□□□ -1.24
UPF3A-203ENST00000474056 KRTAP20-1Q3LI63 56 aa7.3□□□□□ -1.24
UPF3A-203ENST00000474056 KRTAP8-1Q8IUC2 63 aa7.29□□□□□ -1.24
UPF3A-203ENST00000474056 KRTAP9-9Q9BYP9 154 aa7.28□□□□□ -1.24
UPF3A-203ENST00000474056 KRTAP9-4Q9BYQ2 154 aa7.28□□□□□ -1.24
UPF3A-203ENST00000474056 KRTAP4-8A0A0G2JLE6 195 aa7.23□□□□□ -1.25
UPF3A-203ENST00000474056 KRTAP10-7P60409 375 aaPredicted RBP7.22□□□□□ -1.25
UPF3A-203ENST00000474056 SPRR2EP22531 72 aa7.21□□□□□ -1.26
UPF3A-203ENST00000474056 SPRR2BP35325 72 aa7.21□□□□□ -1.26
UPF3A-203ENST00000474056 SPRR2AP35326 72 aa7.21□□□□□ -1.26
UPF3A-203ENST00000474056 KRTAP13-4Q3LI77 160 aa7.18□□□□□ -1.26
UPF3A-203ENST00000474056 KRTAP10-12P60413 245 aa7.15□□□□□ -1.26
UPF3A-203ENST00000474056 COA5Q86WW8 74 aa7.14□□□□□ -1.27
UPF3A-203ENST00000474056 LCE1AQ5T7P2 110 aa7.12□□□□□ -1.27
UPF3A-203ENST00000474056 KRTAP2-3P0C7H8 128 aa7.1□□□□□ -1.27
UPF3A-203ENST00000474056 KRTAP2-4Q9BYR9 128 aa7.1□□□□□ -1.27
UPF3A-203ENST00000474056 COX7CP15954 63 aa7.09□□□□□ -1.27
UPF3A-203ENST00000474056 CYSTM1Q9H1C7 97 aa7.03□□□□□ -1.28
UPF3A-203ENST00000474056 H7BZZ5 65 aa7□□□□□ -1.29
UPF3A-203ENST00000474056 CAMK2N1Q7Z7J9 78 aa6.98□□□□□ -1.29
UPF3A-203ENST00000474056 SPRR2DP22532 72 aa6.97□□□□□ -1.29
UPF3A-203ENST00000474056 SEC61GP60059 68 aa6.97□□□□□ -1.29
UPF3A-203ENST00000474056 SERP1Q9Y6X1 66 aa6.97□□□□□ -1.29
UPF3A-203ENST00000474056 A0A0D9SG42 100 aa6.93□□□□□ -1.3
UPF3A-203ENST00000474056 LCE1DQ5T752 114 aa6.92□□□□□ -1.3
UPF3A-203ENST00000474056 SPATA8Q6RVD6 105 aa6.92□□□□□ -1.3
UPF3A-203ENST00000474056 KRTAP2-2Q9BYT5 123 aa6.89□□□□□ -1.31
UPF3A-203ENST00000474056 KRTAP2-1Q9BYU5 128 aa6.89□□□□□ -1.31
UPF3A-203ENST00000474056 A0A1B0GU33 70 aa6.88□□□□□ -1.31
UPF3A-203ENST00000474056 KRTAP4-7Q9BYR0 210 aa6.88□□□□□ -1.31
UPF3A-203ENST00000474056 SPINT4Q6UDR6 99 aa6.83□□□□□ -1.32
UPF3A-203ENST00000474056 ANAPC13Q9BS18 74 aa6.83□□□□□ -1.32
UPF3A-203ENST00000474056 KRTAP12-1P59990 96 aa6.79□□□□□ -1.32
UPF3A-203ENST00000474056 A0A1B0GU69 56 aa6.76□□□□□ -1.33
UPF3A-203ENST00000474056 LCE4AQ5TA78 99 aa6.76□□□□□ -1.33
UPF3A-203ENST00000474056 KRTAP19-7Q3SYF9 63 aa6.75□□□□□ -1.33
UPF3A-203ENST00000474056 KRTAP4-9Q9BYQ8 210 aa6.74□□□□□ -1.33
UPF3A-203ENST00000474056 CCDC179H3BU77 68 aa6.73□□□□□ -1.33
UPF3A-203ENST00000474056 MT1EP04732 61 aa6.69□□□□□ -1.34
UPF3A-203ENST00000474056 SMIM26A0A096LP01 95 aa6.68□□□□□ -1.34
UPF3A-203ENST00000474056 A8MU10 97 aa6.67□□□□□ -1.34
UPF3A-203ENST00000474056 LCE5AQ5TCM9 118 aa6.64□□□□□ -1.35
UPF3A-203ENST00000474056 KRTAP19-3Q7Z4W3 81 aa6.63□□□□□ -1.35
UPF3A-203ENST00000474056 KRTAP4-2Q9BYR5 136 aa6.61□□□□□ -1.35
UPF3A-203ENST00000474056 ATP5EP56381 51 aaPredicted RBP6.6□□□□□ -1.35
UPF3A-203ENST00000474056 KRTAP19-4Q3LI73 84 aa6.6□□□□□ -1.35
UPF3A-203ENST00000474056 SVIPQ8NHG7 77 aa6.6□□□□□ -1.35
UPF3A-203ENST00000474056 KRTAP19-5Q3LI72 72 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms