RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TP53AIP1Q9HCN2 124 aa8.44□□□□□ -1.06
CCDC88B-206ENST00000473405 NEBP20929 6669 aa8.44□□□□□ -1.06
CCDC88B-206ENST00000473405 Q5VV11 94 aa8.43□□□□□ -1.06
CCDC88B-206ENST00000473405 A6NN06 94 aa8.41□□□□□ -1.06
CCDC88B-206ENST00000473405 KRTAP3-3Q9BYR6 98 aa8.39□□□□□ -1.07
CCDC88B-206ENST00000473405 MUC12Q9UKN1 5478 aa8.37□□□□□ -1.07
CCDC88B-206ENST00000473405 KLKP1Q107X0 134 aa8.35□□□□□ -1.07
CCDC88B-206ENST00000473405 OCR1Q9BZK8 76 aa8.34□□□□□ -1.07
CCDC88B-206ENST00000473405 CYP4F30PQ9H0H9 118 aa8.33□□□□□ -1.08
CCDC88B-206ENST00000473405 KRTAP10-5P60370 271 aa8.32□□□□□ -1.08
CCDC88B-206ENST00000473405 UQCRQO14949 82 aa8.28□□□□□ -1.08
CCDC88B-206ENST00000473405 TRAV22A0A0B4J277 110 aa8.26□□□□□ -1.09
CCDC88B-206ENST00000473405 LOC101927531A0A1B0GV80 90 aa8.23□□□□□ -1.09
CCDC88B-206ENST00000473405 SCGB1A1P11684 91 aa8.22□□□□□ -1.09
CCDC88B-206ENST00000473405 MDN1Q9NU22 5596 aa8.2□□□□□ -1.1
CCDC88B-206ENST00000473405 CRIPTQ9P021 101 aa8.2□□□□□ -1.1
CCDC88B-206ENST00000473405 KMT2DO14686 5537 aa8.2□□□□□ -1.1
CCDC88B-206ENST00000473405 H0Y9P7 68 aa8.19□□□□□ -1.1
CCDC88B-206ENST00000473405 ATOX1O00244 68 aa8.19□□□□□ -1.1
CCDC88B-206ENST00000473405 TRAV7A0A075B6U4 112 aa8.18□□□□□ -1.1
CCDC88B-206ENST00000473405 SMIM20Q8N5G0 67 aa8.17□□□□□ -1.1
CCDC88B-206ENST00000473405 KRTAP5-9P26371 169 aa8.15□□□□□ -1.1
CCDC88B-206ENST00000473405 H0YAA0 97 aa8.11□□□□□ -1.11
CCDC88B-206ENST00000473405 SERP2Q8N6R1 65 aa8.1□□□□□ -1.11
CCDC88B-206ENST00000473405 H3BPC8 53 aa8.09□□□□□ -1.11
CCDC88B-206ENST00000473405 MP68P56378 58 aa8.09□□□□□ -1.11
CCDC88B-206ENST00000473405 LINC00208Q96KT6 92 aa8.09□□□□□ -1.11
CCDC88B-206ENST00000473405 NDUFC1O43677 76 aa8.08□□□□□ -1.12
CCDC88B-206ENST00000473405 KRTAP20-1Q3LI63 56 aa8.02□□□□□ -1.13
CCDC88B-206ENST00000473405 A8MUN3 132 aa8.01□□□□□ -1.13
CCDC88B-206ENST00000473405 COX7CP15954 63 aa8.01□□□□□ -1.13
CCDC88B-206ENST00000473405 ADM2Q7Z4H4 148 aa8□□□□□ -1.13
CCDC88B-206ENST00000473405 C20orf197Q8N268 126 aa7.96□□□□□ -1.14
CCDC88B-206ENST00000473405 ANAPC13Q9BS18 74 aa7.96□□□□□ -1.14
CCDC88B-206ENST00000473405 SNURFQ9Y675 71 aa7.95□□□□□ -1.14
CCDC88B-206ENST00000473405 MT1XP80297 61 aa7.93□□□□□ -1.14
CCDC88B-206ENST00000473405 CYSTM1Q9H1C7 97 aa7.89□□□□□ -1.15
CCDC88B-206ENST00000473405 PRO2289Q9P1D8 64 aa7.89□□□□□ -1.15
CCDC88B-206ENST00000473405 CCDC179H3BU77 68 aa7.85□□□□□ -1.15
CCDC88B-206ENST00000473405 SPRR2FQ96RM1 72 aa7.84□□□□□ -1.15
CCDC88B-206ENST00000473405 P0C880 135 aa7.83□□□□□ -1.16
CCDC88B-206ENST00000473405 PLAC4Q8WY50 150 aa7.81□□□□□ -1.16
CCDC88B-206ENST00000473405 DMAC1Q96GE9 116 aa7.81□□□□□ -1.16
CCDC88B-206ENST00000473405 H7BZZ5 65 aa7.8□□□□□ -1.16
CCDC88B-206ENST00000473405 R4GN34 69 aa7.8□□□□□ -1.16
CCDC88B-206ENST00000473405 SPANXA2-OT1Q8N9U9 137 aa7.79□□□□□ -1.16
CCDC88B-206ENST00000473405 SPRR2EP22531 72 aa7.76□□□□□ -1.17
CCDC88B-206ENST00000473405 SPRR2BP35325 72 aa7.76□□□□□ -1.17
CCDC88B-206ENST00000473405 SPRR2AP35326 72 aa7.76□□□□□ -1.17
CCDC88B-206ENST00000473405 KRTAP2-3P0C7H8 128 aa7.75□□□□□ -1.17
CCDC88B-206ENST00000473405 KRTAP12-2P59991 146 aa7.75□□□□□ -1.17
CCDC88B-206ENST00000473405 KRTAP2-4Q9BYR9 128 aa7.75□□□□□ -1.17
CCDC88B-206ENST00000473405 M0QZ58 72 aa7.74□□□□□ -1.17
CCDC88B-206ENST00000473405 KRTAP8-1Q8IUC2 63 aa7.74□□□□□ -1.17
CCDC88B-206ENST00000473405 KRTAP3-2Q9BYR7 98 aa7.74□□□□□ -1.17
CCDC88B-206ENST00000473405 LCE1AQ5T7P2 110 aa7.66□□□□□ -1.18
CCDC88B-206ENST00000473405 ACYP2P14621 99 aa7.64□□□□□ -1.19
CCDC88B-206ENST00000473405 KRTAP4-8A0A0G2JLE6 195 aa7.63□□□□□ -1.19
CCDC88B-206ENST00000473405 LINC01554Q52M75 96 aa7.63□□□□□ -1.19
CCDC88B-206ENST00000473405 KRTAP4-8Q9BYQ9 185 aa7.63□□□□□ -1.19
CCDC88B-206ENST00000473405 PCP4P48539 62 aa7.59□□□□□ -1.19
CCDC88B-206ENST00000473405 KRTAP10-7P60409 375 aaPredicted RBP7.55□□□□□ -1.2
CCDC88B-206ENST00000473405 TMEM258P61165 79 aa7.55□□□□□ -1.2
CCDC88B-206ENST00000473405 ATP5EP56381 51 aaPredicted RBP7.53□□□□□ -1.2
CCDC88B-206ENST00000473405 COA5Q86WW8 74 aa7.53□□□□□ -1.2
CCDC88B-206ENST00000473405 KRTAP10-12P60413 245 aa7.51□□□□□ -1.21
CCDC88B-206ENST00000473405 SPRR2DP22532 72 aa7.5□□□□□ -1.21
CCDC88B-206ENST00000473405 KRTAP2-2Q9BYT5 123 aa7.49□□□□□ -1.21
CCDC88B-206ENST00000473405 KRTAP2-1Q9BYU5 128 aa7.49□□□□□ -1.21
CCDC88B-206ENST00000473405 CHKB-CPT1BH3BT56 60 aa7.45□□□□□ -1.22
CCDC88B-206ENST00000473405 SPTSSBQ8NFR3 76 aa7.4□□□□□ -1.22
CCDC88B-206ENST00000473405 LCE3BQ5TA77 95 aa7.32□□□□□ -1.24
CCDC88B-206ENST00000473405 SERP1Q9Y6X1 66 aa7.31□□□□□ -1.24
CCDC88B-206ENST00000473405 KRTAP13-4Q3LI77 160 aa7.26□□□□□ -1.25
CCDC88B-206ENST00000473405 RPS28P62857 69 aaKnown RBP7.14□□□□□ -1.27
CCDC88B-206ENST00000473405 LINC01558Q9Y6Z2 57 aa7.14□□□□□ -1.27
CCDC88B-206ENST00000473405 CAMK2N1Q7Z7J9 78 aa7.13□□□□□ -1.27
CCDC88B-206ENST00000473405 DSTQ03001 7570 aaKnown RBP7.12□□□□□ -1.27
CCDC88B-206ENST00000473405 KRTAP19-7Q3SYF9 63 aa7.09□□□□□ -1.27
CCDC88B-206ENST00000473405 A0A1B0GU69 56 aa7.07□□□□□ -1.28
CCDC88B-206ENST00000473405 SEC61GP60059 68 aa7.07□□□□□ -1.28
CCDC88B-206ENST00000473405 LCE5AQ5TCM9 118 aa7.06□□□□□ -1.28
CCDC88B-206ENST00000473405 SMIM26A0A096LP01 95 aa7.04□□□□□ -1.28
CCDC88B-206ENST00000473405 MT1EP04732 61 aa7.03□□□□□ -1.28
CCDC88B-206ENST00000473405 Q1T7F1 81 aa7.03□□□□□ -1.28
CCDC88B-206ENST00000473405 A0A1B0GU33 70 aa6.99□□□□□ -1.29
CCDC88B-206ENST00000473405 KRTAP19-3Q7Z4W3 81 aa6.99□□□□□ -1.29
CCDC88B-206ENST00000473405 GPR98Q8WXG9 6306 aa6.97□□□□□ -1.29
CCDC88B-206ENST00000473405 PRR15LQ9BU68 103 aa6.97□□□□□ -1.29
CCDC88B-206ENST00000473405 V9GYY9 64 aa6.97□□□□□ -1.29
CCDC88B-206ENST00000473405 A0A0D9SG42 100 aa6.96□□□□□ -1.3
CCDC88B-206ENST00000473405 SPATA8Q6RVD6 105 aa6.92□□□□□ -1.3
CCDC88B-206ENST00000473405 PSPHP1O15172 72 aa6.88□□□□□ -1.31
CCDC88B-206ENST00000473405 KRTAP4-9Q9BYQ8 210 aa6.86□□□□□ -1.31
CCDC88B-206ENST00000473405 KRTAP12-1P59990 96 aa6.85□□□□□ -1.31
CCDC88B-206ENST00000473405 KRTAP19-5Q3LI72 72 aa6.85□□□□□ -1.31
CCDC88B-206ENST00000473405 SPINT4Q6UDR6 99 aa6.85□□□□□ -1.31
CCDC88B-206ENST00000473405 UQCR11O14957 56 aa6.8□□□□□ -1.32
CCDC88B-206ENST00000473405 A8MU10 97 aa6.79□□□□□ -1.32
CCDC88B-206ENST00000473405 MT1GP13640 62 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms