RNA–Protein interactions for RNA: ENST00000462817.5

LIMS1-211, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-211ENST00000462817 LINC00643Q86TS7 51 aa7.07□□□□□ -1.28
LIMS1-211ENST00000462817 A0A087WVE0 104 aa7.05□□□□□ -1.28
LIMS1-211ENST00000462817 KLKP1Q107X0 134 aa7.01□□□□□ -1.29
LIMS1-211ENST00000462817 A0A1B0GV90 55 aa7□□□□□ -1.29
LIMS1-211ENST00000462817 Q5VV11 94 aa7□□□□□ -1.29
LIMS1-211ENST00000462817 NDUFC1O43677 76 aa6.98□□□□□ -1.29
LIMS1-211ENST00000462817 LINC00208Q96KT6 92 aa6.98□□□□□ -1.29
LIMS1-211ENST00000462817 MP68P56378 58 aa6.97□□□□□ -1.29
LIMS1-211ENST00000462817 SPRR2GQ9BYE4 73 aa6.97□□□□□ -1.29
LIMS1-211ENST00000462817 IMUPQ9GZP8 106 aa6.96□□□□□ -1.3
LIMS1-211ENST00000462817 J3QR89 54 aa6.95□□□□□ -1.3
LIMS1-211ENST00000462817 A8MUN3 132 aa6.94□□□□□ -1.3
LIMS1-211ENST00000462817 A6NN06 94 aa6.93□□□□□ -1.3
LIMS1-211ENST00000462817 KRTAP4-8Q9BYQ9 185 aa6.93□□□□□ -1.3
LIMS1-211ENST00000462817 CRIPTQ9P021 101 aa6.92□□□□□ -1.3
LIMS1-211ENST00000462817 MT1BP07438 61 aa6.91□□□□□ -1.3
LIMS1-211ENST00000462817 KRTAP19-8Q3LI54 63 aa6.91□□□□□ -1.3
LIMS1-211ENST00000462817 OCR1Q9BZK8 76 aa6.89□□□□□ -1.31
LIMS1-211ENST00000462817 SCGB1A1P11684 91 aa6.88□□□□□ -1.31
LIMS1-211ENST00000462817 H0YAA0 97 aa6.85□□□□□ -1.31
LIMS1-211ENST00000462817 H3BPC8 53 aa6.83□□□□□ -1.32
LIMS1-211ENST00000462817 KRTAP6-3Q3LI67 103 aa6.83□□□□□ -1.32
LIMS1-211ENST00000462817 ADM2Q7Z4H4 148 aa6.82□□□□□ -1.32
LIMS1-211ENST00000462817 KRTAP10-5P60370 271 aa6.78□□□□□ -1.32
LIMS1-211ENST00000462817 C20orf197Q8N268 126 aa6.71□□□□□ -1.34
LIMS1-211ENST00000462817 DMAC1Q96GE9 116 aa6.71□□□□□ -1.34
LIMS1-211ENST00000462817 R4GN34 69 aa6.68□□□□□ -1.34
LIMS1-211ENST00000462817 K7ERU9 68 aa6.65□□□□□ -1.34
LIMS1-211ENST00000462817 PLAC4Q8WY50 150 aa6.65□□□□□ -1.34
LIMS1-211ENST00000462817 SMIM20Q8N5G0 67 aa6.64□□□□□ -1.35
LIMS1-211ENST00000462817 MT-ATP8P03928 68 aa6.63□□□□□ -1.35
LIMS1-211ENST00000462817 LCE3BQ5TA77 95 aa6.63□□□□□ -1.35
LIMS1-211ENST00000462817 PRO2289Q9P1D8 64 aa6.63□□□□□ -1.35
LIMS1-211ENST00000462817 P0C880 135 aa6.62□□□□□ -1.35
LIMS1-211ENST00000462817 NEBP20929 6669 aa6.61□□□□□ -1.35
LIMS1-211ENST00000462817 TRAV7A0A075B6U4 112 aa6.61□□□□□ -1.35
LIMS1-211ENST00000462817 M0QZ58 72 aa6.61□□□□□ -1.35
LIMS1-211ENST00000462817 ACYP2P14621 99 aa6.61□□□□□ -1.35
LIMS1-211ENST00000462817 KRTAP4-12Q9BQ66 201 aa6.6□□□□□ -1.35
LIMS1-211ENST00000462817 MUC12Q9UKN1 5478 aa6.6□□□□□ -1.35
LIMS1-211ENST00000462817 SPTSSBQ8NFR3 76 aa6.57□□□□□ -1.36
LIMS1-211ENST00000462817 LINC01554Q52M75 96 aa6.55□□□□□ -1.36
LIMS1-211ENST00000462817 CHKB-CPT1BH3BT56 60 aa6.54□□□□□ -1.36
LIMS1-211ENST00000462817 MT1XP80297 61 aa6.49□□□□□ -1.37
LIMS1-211ENST00000462817 SNURFQ9Y675 71 aa6.49□□□□□ -1.37
LIMS1-211ENST00000462817 KRTAP5-9P26371 169 aa6.48□□□□□ -1.37
LIMS1-211ENST00000462817 KMT2DO14686 5537 aa6.46□□□□□ -1.37
LIMS1-211ENST00000462817 MDN1Q9NU22 5596 aa6.45□□□□□ -1.38
LIMS1-211ENST00000462817 KRTAP9-9Q9BYP9 154 aa6.42□□□□□ -1.38
LIMS1-211ENST00000462817 KRTAP9-4Q9BYQ2 154 aa6.42□□□□□ -1.38
LIMS1-211ENST00000462817 KRTAP4-8A0A0G2JLE6 195 aa6.38□□□□□ -1.39
LIMS1-211ENST00000462817 SERP2Q8N6R1 65 aa6.38□□□□□ -1.39
LIMS1-211ENST00000462817 SPANXA2-OT1Q8N9U9 137 aa6.38□□□□□ -1.39
LIMS1-211ENST00000462817 SPRR2FQ96RM1 72 aa6.37□□□□□ -1.39
LIMS1-211ENST00000462817 KRTAP20-1Q3LI63 56 aa6.36□□□□□ -1.39
LIMS1-211ENST00000462817 KRTAP8-1Q8IUC2 63 aa6.36□□□□□ -1.39
LIMS1-211ENST00000462817 KRTAP12-2P59991 146 aa6.35□□□□□ -1.39
LIMS1-211ENST00000462817 SPRR2EP22531 72 aa6.28□□□□□ -1.4
LIMS1-211ENST00000462817 SPRR2BP35325 72 aa6.28□□□□□ -1.4
LIMS1-211ENST00000462817 SPRR2AP35326 72 aa6.28□□□□□ -1.4
LIMS1-211ENST00000462817 COA5Q86WW8 74 aa6.22□□□□□ -1.41
LIMS1-211ENST00000462817 SEC61GP60059 68 aa6.21□□□□□ -1.42
LIMS1-211ENST00000462817 KRTAP10-7P60409 375 aaPredicted RBP6.21□□□□□ -1.42
LIMS1-211ENST00000462817 KRTAP2-3P0C7H8 128 aa6.19□□□□□ -1.42
LIMS1-211ENST00000462817 LCE1DQ5T752 114 aa6.19□□□□□ -1.42
LIMS1-211ENST00000462817 KRTAP2-4Q9BYR9 128 aa6.19□□□□□ -1.42
LIMS1-211ENST00000462817 COX7CP15954 63 aa6.18□□□□□ -1.42
LIMS1-211ENST00000462817 SERP1Q9Y6X1 66 aa6.18□□□□□ -1.42
LIMS1-211ENST00000462817 CAMK2N1Q7Z7J9 78 aa6.17□□□□□ -1.42
LIMS1-211ENST00000462817 KRTAP4-7Q9BYR0 210 aa6.17□□□□□ -1.42
LIMS1-211ENST00000462817 KRTAP10-12P60413 245 aa6.16□□□□□ -1.42
LIMS1-211ENST00000462817 KRTAP13-4Q3LI77 160 aa6.16□□□□□ -1.42
LIMS1-211ENST00000462817 LCE1AQ5T7P2 110 aa6.14□□□□□ -1.43
LIMS1-211ENST00000462817 A0A0D9SG42 100 aa6.07□□□□□ -1.44
LIMS1-211ENST00000462817 SPRR2DP22532 72 aa6.07□□□□□ -1.44
LIMS1-211ENST00000462817 H7BZZ5 65 aa6.06□□□□□ -1.44
LIMS1-211ENST00000462817 A0A1B0GU33 70 aa6.04□□□□□ -1.44
LIMS1-211ENST00000462817 SPATA8Q6RVD6 105 aa6.02□□□□□ -1.45
LIMS1-211ENST00000462817 SPINT4Q6UDR6 99 aa6.01□□□□□ -1.45
LIMS1-211ENST00000462817 KRTAP4-9Q9BYQ8 210 aa6.01□□□□□ -1.45
LIMS1-211ENST00000462817 CYSTM1Q9H1C7 97 aa6.01□□□□□ -1.45
LIMS1-211ENST00000462817 KRTAP2-2Q9BYT5 123 aa6□□□□□ -1.45
LIMS1-211ENST00000462817 KRTAP2-1Q9BYU5 128 aa6□□□□□ -1.45
LIMS1-211ENST00000462817 ANAPC13Q9BS18 74 aa5.98□□□□□ -1.45
LIMS1-211ENST00000462817 A0A1B0GU69 56 aa5.95□□□□□ -1.46
LIMS1-211ENST00000462817 SMIM26A0A096LP01 95 aa5.89□□□□□ -1.47
LIMS1-211ENST00000462817 KRTAP12-1P59990 96 aa5.87□□□□□ -1.47
LIMS1-211ENST00000462817 KRTAP19-4Q3LI73 84 aa5.87□□□□□ -1.47
LIMS1-211ENST00000462817 KRTAP4-2Q9BYR5 136 aa5.87□□□□□ -1.47
LIMS1-211ENST00000462817 LCE4AQ5TA78 99 aa5.83□□□□□ -1.48
LIMS1-211ENST00000462817 CCDC179H3BU77 68 aa5.82□□□□□ -1.48
LIMS1-211ENST00000462817 ATP5EP56381 51 aaPredicted RBP5.8□□□□□ -1.48
LIMS1-211ENST00000462817 KRTAP19-7Q3SYF9 63 aa5.79□□□□□ -1.48
LIMS1-211ENST00000462817 PRR15LQ9BU68 103 aa5.79□□□□□ -1.48
LIMS1-211ENST00000462817 A8MU10 97 aa5.78□□□□□ -1.48
LIMS1-211ENST00000462817 KRTAP4-11Q9BYQ6 195 aa5.77□□□□□ -1.49
LIMS1-211ENST00000462817 MT1EP04732 61 aa5.76□□□□□ -1.49
LIMS1-211ENST00000462817 KRTAP19-3Q7Z4W3 81 aa5.73□□□□□ -1.49
LIMS1-211ENST00000462817 LCE5AQ5TCM9 118 aa5.72□□□□□ -1.49
LIMS1-211ENST00000462817 H3BS24 57 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms